1. 2018
  2. Synthesis and evaluation of aryliden- and hetarylidenfuranone derivatives of usnic acid as highly potent Tdp1 inhibitors

    Zakharova, O., Luzina, O., Zakharenko, A., Sokolov, D., Filimonov, A., Dyrkheeva, N., Chepanova, A., Ilina, E., Ilyina, A., Klabenkova, K., Chelobanov, B., Stetsenko, D., Zafar, A., Eurtivong, C., Reynisson, J., Volcho, K., Salakhutdinov, N. & Lavrik, O., 15 Aug 2018, In: Bioorganic and Medicinal Chemistry. 26, 15, p. 4470-4480 11 p.

    Research output: Contribution to journalArticlepeer-review

  3. Evolutionary sex chromosome translocations in amniotes

    Trifonov, V. A., Lisachov, A. P., Kichigin, I. G., Makunin, A. I., Pereira, J. C., Druzhkova, A. S., Ferguson-Smith, M. A. & Giovannotti, M., 16 Aug 2018, In: Comparative Cytogenetics. 12, 3, p. 304-305 2 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  4. Kinetic features of 30-50 exonuclease activity of human AP-endonuclease ape1

    Kuznetsova, A. A., Fedorova, O. S. & Kuznetsov, N. A., 21 Aug 2018, In: Molecules. 23, 9, 14 p., 2101.

    Research output: Contribution to journalArticlepeer-review

  5. Apurinic/apyrimidinic endonuclease Apn1 from Saccharomyces cerevisiae is recruited to the nucleotide incision repair pathway: Kinetic and structural features

    Dyakonova, E. S., Koval, V. V., Lomzov, A. A., Ishchenko, A. A. & Fedorova, O. S., 1 Sept 2018, In: Biochimie. 152, p. 53-62 10 p.

    Research output: Contribution to journalArticlepeer-review

  6. Low-pass single-chromosome sequencing of human small supernumerary marker chromosomes (sSMCs) and Apodemus B chromosomes

    Makunin, A. I., Rajičić, M., Karamysheva, T. V., Romanenko, S. A., Druzhkova, A. S., Blagojević, J., Vujošević, M., Rubtsov, N. B., Graphodatsky, A. S. & Trifonov, V. A., 1 Sept 2018, In: Chromosoma. 127, 3, p. 301-311 11 p.

    Research output: Contribution to journalArticlepeer-review

  7. Novel group of tyrosyl-DNA-phosphodiesterase 1 inhibitors based on disaccharide nucleosides as drug prototypes for anti-cancer therapy

    Komarova, A. O., Drenichev, M. S., Dyrkheeva, N. S., Kulikova, I. V., Oslovsky, V. E., Zakharova, O. D., Zakharenko, A. L., Mikhailov, S. N. & Lavrik, O. I., 7 Sept 2018, In: Journal of Enzyme Inhibition and Medicinal Chemistry. 33, 1, p. 1415-1429 15 p.

    Research output: Contribution to journalArticlepeer-review

  8. OpenWorm: Overview and recent advances in integrative biological simulation of Caenorhabditis elegans

    Sarma, G. P., Lee, C. W., Portegys, T., Ghayoomie, V., Jacobs, T., Alicea, B., Cantarelli, M., Currie, M., Gerkin, R. C., Gingell, S., Gleeson, P., Gordon, R., Hasani, R. M., Idili, G., Khayrulin, S., Lung, D., Palyanov, A., Watts, M. & Larson, S. D., 10 Sept 2018, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 373, 1758, 10 p., 20170382.

    Research output: Contribution to journalArticlepeer-review

  9. Three-dimensional simulation of the Caenorhabditis elegans body and muscle cells in liquid and gel environments for behavioural analysis

    Palyanov, A., Khayrulin, S. & Larson, S. D., 10 Sept 2018, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 373, 1758, 10 p., 20170376.

    Research output: Contribution to journalArticlepeer-review

  10. B chromosomes of the asian seabass (Lates calcarifer) contribute to genome variations at the level of individuals and populations

    Komissarov, A., Vij, S., Yurchenko, A., Trifonov, V., Thevasagayam, N., Saju, J., Sridatta, P. S. R., Purushothaman, K., Graphodatsky, A., Orbán, L. & Kuznetsova, I., 20 Sept 2018, In: Genes. 9, 10, p. 1.-15 15 p., 464.

    Research output: Contribution to journalArticlepeer-review

  11. A novel class of tyrosyl-DNA phosphodiesterase 1 inhibitors that contains the octahydro-2H-chromen-4-ol scaffold

    Li-Zhulanov, N. S., Zakharenko, A. L., Chepanova, A. A., Patel, J., Zafar, A., Volcho, K. P., Salakhutdinov, N. F., Reynisson, J., Leung, I. K. H. & Lavrik, O. I., 26 Sept 2018, In: Molecules. 23, 10, 14 p., 2468.

    Research output: Contribution to journalArticlepeer-review

  12. Data on PAGE analysis and MD simulation for the interaction of endonuclease Apn1 from Saccharomyces cerevisiae with DNA substrates containing 5,6-dihydrouracyl and 2-aminopurine

    Dyakonova, E. S., Koval, V. V., Lomzov, A. A., Ishchenko, A. A. & Fedorova, O. S., 1 Oct 2018, In: Data in Brief. 20, p. 1515-1524 10 p.

    Research output: Contribution to journalArticlepeer-review

  13. Humoral immunity to influenza in an at-risk population and severe influenza cases in Russia in 2016–2017

    Ilyicheva, T. N., Durymanov, A. G., Svyatchenko, S. V., Marchenko, V. Y., Sobolev, I. A., Bakulina, A. Y., Goncharova, N. I., Kolosova, N. P., Susloparov, I. M., Pyankova, O. G., Ryzhikov, A. B. & Maksyutov, R. A., 1 Oct 2018, In: Archives of Virology. 163, 10, p. 2675-2685 11 p.

    Research output: Contribution to journalArticlepeer-review

  14. The rRNA Gene Containing Marker Chromosome Associated with a Intellectual Disability: A Clinical Case Report

    Telepova, A. S., Romanenko, S. A., Lemskaya, N. A., Maksimova, Y. V., Shorina, A. R. & Yudkin, D. V., 1 Oct 2018, In: Molecular Genetics, Microbiology and Virology. 33, 4, p. 241-244 4 p.

    Research output: Contribution to journalArticlepeer-review

  15. Conventional anti-glioblastoma chemotherapy affects proteoglycan composition of brain extracellular matrix in rat experimental model in vivo

    Tsidulko, A. Y., Bezier, C., De La Bourdonnaye, G., Suhovskih, A. V., Pankova, T. M., Kazanskaya, G. M., Aidagulova, S. V. & Grigorieva, E. V., 2 Oct 2018, In: Frontiers in Pharmacology. 9, OCT, p. 1104 13 p., 1104.

    Research output: Contribution to journalArticlepeer-review

  16. Multiple intrasyntenic rearrangements and rapid speciation in voles

    Romanenko, S. A., Serdyukova, N. A., Perelman, P. L., Trifonov, V. A., Golenishchev, F. N., Bulatova, N. S., Stanyon, R. & Graphodatsky, A. S., 8 Oct 2018, In: Scientific Reports. 8, 1, p. 14980 9 p., 14980.

    Research output: Contribution to journalArticlepeer-review

  17. Establishment of Constraints on Amyloid Formation Imposed by Steric Exclusion of Globular Domains

    Azizyan, R. A., Garro, A., Radkova, Z., Anikeenko, A., Bakulina, A., Dumas, C. & Kajava, A. V., 12 Oct 2018, In: Journal of Molecular Biology. 430, 20, p. 3835-3846 12 p.

    Research output: Contribution to journalArticlepeer-review

  18. A mosaic intragenic microduplication of LAMA1 and a constitutional 18p11.32 microduplication in a patient with keratosis pilaris and intellectual disability

    Kashevarova, A. A., Nazarenko, L. P., Skryabin, N. A., Nikitina, T. V., Vasilyev, S. A., Tolmacheva, E. N., Lopatkina, M. E., Salyukova, O. A., Chechetkina, N. N., Vorotelyak, E. A., Kalabusheva, E. P., Fishman, V. S., Kzhyshkowska, J., Graziano, C., Magini, P., Romeo, G. & Lebedev, I. N., 1 Nov 2018, In: American Journal of Medical Genetics, Part A. 176, 11, p. 2395-2403 9 p.

    Research output: Contribution to journalArticlepeer-review

  19. Erratum: Polymorphisms of genes involved in inflammation and blood vessel development influence the risk of varicose veins

    Shadrina, A., Tsepilov, Y., Smetanina, M., Voronina, E., Seliverstov, E., Ilyukhin, E., Kirienko, A., Zolotukhin, I. & Filipenko, M., 1 Nov 2018, In: Clinical Genetics. 94, 5, p. 491 1 p.

    Research output: Contribution to journalComment/debatepeer-review

  20. Excision of Carbohydrate-Modified dNMP Analogues from DNA 3' end by Human Apurinic/Apyrimidinic Endonuclease 1 (APE1) and Tyrosyl-DNA Phosphodiesterase 1 (TDP1)

    Dyrkheeva, N. S., Lebedeva, N. A., Sherstyuk, Y. V., Abramova, T. V., Silnikov, V. N. & Lavrik, O. I., 1 Nov 2018, In: Molekuliarnaia biologiia. 52, 6, p. 1066-1073 8 p.

    Research output: Contribution to journalArticlepeer-review

  21. Excision of Carbohydrate-Modified dNMP Analogues from DNA 3' end by Human Apurinic/Apyrimidinic Endonuclease 1 (APE1) and Tyrosyl-DNA Phosphodiesterase 1 (TDP1)

    Dyrkheeva, N. S., Lebedeva, N. A., Sherstyuk, Y. V., Abramova, T. V., Silnikov, V. N. & Lavrik, O. I., 1 Nov 2018, In: Molecular Biology. 52, 6, p. 922-928 7 p.

    Research output: Contribution to journalArticlepeer-review

  22. Modified Oligonucleotides for Guiding RNA Cleavage Using Bacterial RNase P

    Novopashina, D. S., Nazarov, A. S., Vorobjeva, M. A., Kuprushkin, M. S., Davydova, A. S., Lomzov, A. A., Pyshnyi, D. V., Altman, S. & Venyaminova, A. G., 1 Nov 2018, In: Molekuliarnaia biologiia. 52, 6, p. 1045-1054 10 p.

    Research output: Contribution to journalArticlepeer-review

  23. Modified Oligonucleotides for Guiding RNA Cleavage Using Bacterial RNase P

    Novopashina, D. S., Nazarov, A. S., Vorobjeva, M. A., Kuprushkin, M. S., Davydova, A. S., Lomzov, A. A., Pyshnyi, D. V., Altman, S. & Venyaminova, A. G., 1 Nov 2018, In: Molecular Biology. 52, 6, p. 905-912 8 p.

    Research output: Contribution to journalArticlepeer-review

  24. Nucleotide modifications decrease innate immune response induced by synthetic analogs of snRNAs and snoRNAs

    Stepanov, G., Zhuravlev, E., Shender, V., Nushtaeva, A., Balakhonova, E., Mozhaeva, E., Kasakin, M., Koval, V., Lomzov, A., Pavlyukov, M., Malyants, I., Zhorov, M., Kabilova, T., Chernolovskaya, E., Govorun, V., Kuligina, E., Semenov, D. & Richter, V., 2 Nov 2018, In: Genes. 9, 11, 18 p., 531.

    Research output: Contribution to journalArticlepeer-review

  25. High-frequency pulsed electron-electron double resonance spectroscopy on DNA duplexes using trityl tags and shaped microwave pulses

    Kuzhelev, A., Akhmetzyanov, D., Denysenkov, V., Shevelev, G., Krumkacheva, O., Bagryanskaya, E. & Prisner, T., 7 Nov 2018, In: Physical Chemistry Chemical Physics. 20, 41, p. 26140-26144 5 p.

    Research output: Contribution to journalArticlepeer-review

  26. Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation

    Gruber, D. R., Toner, J. J., Miears, H. L., Shernyukov, A. V., Kiryutin, A. S., Lomzov, A. A., Endutkin, A. V., Grin, I. R., Petrova, D. V., Kupryushkin, M. S., Yurkovskaya, A. V., Johnson, E. C., Okon, M., Bagryanskaya, E. G., Zharkov, D. O. & Smirnov, S. L., 16 Nov 2018, In: Nucleic Acids Research. 46, 20, p. 10827-10839 13 p.

    Research output: Contribution to journalArticlepeer-review

  27. Substrate specificity of human apurinic/apyrimidinic endonuclease APE1 in the nucleotide incision repair pathway

    Kuznetsova, A. A., Matveeva, A. G., Milov, A. D., Vorobjev, Y. N., Dzuba, S. A., Fedorova, O. S. & Kuznetsov, N. A., 30 Nov 2018, In: Nucleic Acids Research. 46, 21, p. 11454-11465 12 p.

    Research output: Contribution to journalArticlepeer-review

  28. BRCA-analyzer: Automatic workflow for processing NGS reads of BRCA1 and BRCA2 genes

    Kechin, A., Khrapov, E., Boyarskikh, U., Kel, A. & Filipenko, M., 1 Dec 2018, In: Computational Biology and Chemistry. 77, p. 297-306 10 p.

    Research output: Contribution to journalArticlepeer-review

  29. Changes in cell differentiation and proliferation lead to production of abzymes in EAE mice treated with DNA–Histone complexes

    Aulova, K. S., Toporkova, L. B., Lopatnikova, J. A., Alshevskaya, A. A., Sedykh, S. E., Buneva, V. N., Budde, T., Meuth, S. G., Popova, N. A., Orlovskaya, I. A. & Nevinsky, G. A., 1 Dec 2018, In: Journal of Cellular and Molecular Medicine. 22, 12, p. 5816-5832 17 p.

    Research output: Contribution to journalArticlepeer-review

  30. Cryptic divergences in the genus Pisum L. (peas), as revealed by phylogenetic analysis of plastid genomes

    Bogdanova, V. S., Mglinets, A. V., Shatskaya, N. V., Kosterin, O. E., Solovyev, V. I. & Vasiliev, G. V., 1 Dec 2018, In: Molecular Phylogenetics and Evolution. 129, p. 280-290 11 p.

    Research output: Contribution to journalArticlepeer-review

  31. Extremely stable high molecular mass soluble multiprotein complex from eggs of sea urchin Strongylocentrotus intermedius with phosphatase activity

    Soboleva, S. E., Burkova, E. E., Dmitrenok, P. S., Bulgakov, D. V., Menzorova, N. I., Buneva, V. N. & Nevinsky, G. A., 1 Dec 2018, In: Journal of Molecular Recognition. 31, 12, 12 p., e2753.

    Research output: Contribution to journalArticlepeer-review

  32. New slbo-Gal4 driver lines for the analysis of border cell migration during Drosophila oogenesis

    Ogienko, A. A., Yarinich, L. A., Fedorova, E. V., Lebedev, M. O., Andreyeva, E. N., Pindyurin, A. V. & Baricheva, E. M., 1 Dec 2018, In: Chromosoma. 127, 4, p. 475-487 13 p.

    Research output: Contribution to journalArticlepeer-review

  33. Replication protein A as a modulator of the poly(ADP-ribose)polymerase 1 activity

    Maltseva, E. A., Krasikova, Y. S., Sukhanova, M. V., Rechkunova, N. I. & Lavrik, O. I., 1 Dec 2018, In: DNA Repair. 72, p. 28-38 11 p.

    Research output: Contribution to journalArticlepeer-review

  34. Design and properties of ligand-conjugated guanine oligonucleotides for recovery of mutated G-quadruplexes

    Takahashi, S., Chelobanov, B., Kim, K. T., Kim, B. H., Stetsenko, D. & Sugimoto, N., 6 Dec 2018, In: Molecules. 23, 12, 13 p., 3228.

    Research output: Contribution to journalArticlepeer-review

  35. 2019
  36. abstract OR-3: Fleeting ensembles: Transient protein-protein interactions in DNA repair

    Жарков, Д. О., 2019, In: International Journal of Biomedicine. 9, S1, p. 6-7 2 p.

    Research output: Contribution to journalConference articlepeer-review

  37. Catalytic antibodies as a new evidence of the humoral immune system dysfunction in schizophrenia

    Ermakov, E., Ivanova, S., Semke, A., Dmitrenok, P., Buneva, V. & Nevinsky, G., 2019, In: European Neuropsychopharmacology. 29, p. S586-S586 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  38. Вирусы гриппа. Методы

    Ильичёва, Т. Н., Нетёсов, С. В. & Гуреев, В. Н., 2019, Новосибирск: ИПЦ НГУ. 258 p.

    Research output: Book/ReportBookResearchpeer-review

  39. Anti-inflammatory Effects of Variola Virus TNF Decoy Receptor in an Experimental Model of Contact Dermatitis

    Viazovaia, E. A., Gileva, I. P., Toporkova, L. B., Shchelkunov, S. N. & Orlovskaya, I. A., 1 Jan 2019, In: Current Pharmaceutical Biotechnology. 19, 11, p. 910-916 7 p.

    Research output: Contribution to journalArticlepeer-review

  40. A rare case of Waardenburg syndrome with unilateral hearing loss caused by nonsense variant c.772C>T (p.Arg259*) in the MITF gene in Yakut patient from the Eastern Siberia (Sakha Republic, Russia)

    Barashkov, N. A., Romanov, G. P., Borisova, U. P., Solovyev, A. V., Pshennikova, V. G., Teryutin, F. M., Bondar, A. A., Morozov, I. V., Khusnutdinova, E. K., Posukh, O. L., Burtseva, T. E., Odland, J. Ø. & Fedorova, S. A., 1 Jan 2019, In: International Journal of Circumpolar Health. 78, 1, p. 1630219 1630219.

    Research output: Contribution to journalArticlepeer-review

  41. Blood circulating exosomes contain distinguishable fractions of free and cell-surface-associated vesicles

    Tamkovich, S., Tutanov, O., Efimenko, A., Grigor’eva, A., Ryabchikova, E., Kirushina, N., Vlassov, V., Tkachuk, V. & Laktionov, P., 1 Jan 2019, In: Current Molecular Medicine. 19, 4, p. 273-285 13 p.

    Research output: Contribution to journalArticlepeer-review

  42. Comparison of Predictive in Silico Tools on Missense Variants in GJB2, GJB6, and GJB3 Genes Associated with Autosomal Recessive Deafness 1A (DFNB1A)

    Pshennikova, V. G., Barashkov, N. A., Romanov, G. P., Teryutin, F. M., Solov'ev, A. V., Gotovtsev, N. N., Nikanorova, A. A., Nakhodkin, S. S., Sazonov, N. N., Morozov, I. V., Bondar, A. A., Dzhemileva, L. U., Khusnutdinova, E. K., Posukh, O. L. & Fedorova, S. A., 1 Jan 2019, In: Scientific World Journal. 2019, p. 5198931 5198931.

    Research output: Contribution to journalArticlepeer-review

  43. Genome constitution and differentiation of subgenomes in Siberian and Far Eastern endemic species of the genus Elymus (Poaceae) according to the sequencing of the nuclear gene waxy

    Agafonov, A. V., Asbaganov, S. V., Shabanova, E. V., Morozov, I. V. & Bondar, A. A., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 7, p. 817-826 10 p.

    Research output: Contribution to journalArticlepeer-review

  44. Immunogenicity of recombinant fragment of orthopoxvirus p35 protein in mice

    Khlusevich, Y. A., Matveev, A. L., Goncharova, E. P., Baykov, I. K. & Tikunova, N. V., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 4, p. 398-404 7 p.

    Research output: Contribution to journalArticlepeer-review

  45. Inhibitory Effect of New Semisynthetic Usnic Acid Derivatives on Human Tyrosyl-DNA Phosphodiesterase 1

    Dyrkheeva, N., Luzina, O., Filimonov, A., Zakharova, O., Ilina, E., Zakharenko, A., Kuprushkin, M., Nilov, D., Gushchina, I., Švedas, V., Salakhutdinov, N. & Lavrik, O., 1 Jan 2019, In: Planta Medica. 85, 2, p. 103-111 9 p.

    Research output: Contribution to journalArticlepeer-review

  46. Investigation of the cytotoxic effects of magnesium alloys on cell cultures

    Frolova, T. S., Boykov, A. A., Tarkova, A. R., Orishchenko, K. E., Prokhorikhin, A. A., Malaev, D. U., Sinitsina, O. I., Baystrukov, V. I., Kretov, E. I., Pryamov, M. V., Merson, D. L. & Vinogradov, A. Y., 1 Jan 2019, In: Patologiya Krovoobrashcheniya i Kardiokhirurgiya. 23, 3, p. 22-29 8 p.

    Research output: Contribution to journalArticlepeer-review

  47. Novel inhibitors of DNA repair enzyme TDP1 combining monoterpenoid and adamantane fragments

    Mozhaitsev, E. S., Zakharenko, A. L., Suslov, E. V., Korchagina, D. V., Zakharova, O. D., Vasil’eva, I. A., Chepanova, A. A., Black, E., Patel, J., Chand, R., Reynisson, J., Leung, I. K. H., Volcho, K. P., Salakhutdinov, N. F. & Lavrik, O. I., 1 Jan 2019, In: Anti-Cancer Agents in Medicinal Chemistry. 19, 4, p. 463-472 10 p.

    Research output: Contribution to journalArticlepeer-review

  48. Novel tyrosyl-DNA phosphodiesterase 1 inhibitors enhance the therapeutic impact of topoteсan on in vivo tumor models

    Zakharenko, A. L., Luzina, O. A., Sokolov, D. N., Kaledin, V. I., Nikolin, V. P., Popova, N. A., Patel, J., Zakharova, O. D., Chepanova, A. A., Zafar, A., Reynisson, J., Leung, E., Leung, I. K. H., Volcho, K. P., Salakhutdinov, N. F. & Lavrik, O. I., 1 Jan 2019, In: European Journal of Medicinal Chemistry. 161, p. 581-593 13 p.

    Research output: Contribution to journalArticlepeer-review

  49. Orientation-controlled, low-temperature plasma growth and applications of h-BN nanosheets

    Merenkov, I. S., Myshenkov, M. S., Zhukov, Y. M., Sato, Y., Frolova, T. S., Danilov, D. V., Kasatkin, I. A., Medvedev, O. S., Pushkarev, R. V., Sinitsyna, O. I., Terauchi, M., Zvereva, I. A., Kosinova, M. L. & Ostrikov, K., 1 Jan 2019, In: Nano Research. 12, 1, p. 91-99 9 p.

    Research output: Contribution to journalArticlepeer-review

  50. Poly(ADP-ribose) polymerases in regulation of DNA repair

    Lavrik, O., 1 Jan 2019, In: Biopolymers and Cell. 35, 3, p. 182-183 2 p.

    Research output: Contribution to journalArticlepeer-review

  51. Replication timing in Drosophila and its peculiarities in polytene chromosomes

    Kolesnikova, T. D., Antonenko, O. V. & Makunin, I. V., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 2, p. 140-147 8 p.

    Research output: Contribution to journalArticlepeer-review

  52. The development of tyrosyl-DNA phosphodyesterase 1 (TDP1) inhibitors based on the amines combining aromatic/heteroaromatic and monoterpenoid moieties

    Mozhaitsev, E., Suslov, E., Demidova, Y., Korchagina, D., Volcho, K., Zakharenko, A., Vasil’eva, I., Kupryushkin, M., Chepanova, A., Ayine-Tora, D. M., Reynisson, J., Salakhutdinov, N. & Lavrik, O., 1 Jan 2019, In: Letters in Drug Design and Discovery. 16, 5, p. 597-605 9 p.

    Research output: Contribution to journalArticlepeer-review

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