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  1. 2024

  2. A non-canonical nucleotide from viral genomes interferes with the oxidative DNA damage repair system

    Yudkina, A. V., Endutkin, A. V., Diatlova, E. A. & Zharkov, D. O., Jan 2024, In: DNA Repair. 133, 8 p., 103605.

    Research output: Contribution to journal › Article › peer-review

  3. Back-Up Base Excision DNA Repair in Human Cells Deficient in the Major AP Endonuclease, APE1

    Kim, D. V., Diatlova, E. A., Zharkov, T. D., Melentyev, V. S., Yudkina, A. V., Endutkin, A. V. & Zharkov, D. O., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 64.

    Research output: Contribution to journal › Article › peer-review

  4. 2023

  5. Cas9 is mostly orthogonal to human systems of DNA break sensing and repair

    Maltseva, E. A., Vasil'eva, I. A., Moor, N. A., Kim, D. V., Dyrkheeva, N. S., Kutuzov, M. M., Vokhtantsev, I. P., Kulishova, L. M., Zharkov, D. O. & Lavrik, O. I., 29 Nov 2023, In: PLoS ONE. 18, 11, 26 p., e0294683.

    Research output: Contribution to journal › Article › peer-review

  6. Response of PRIMPOL-Knockout Human Lung Adenocarcinoma A549 Cells to Genotoxic Stress

    Gromova, A. S., Boldinova, E. O., Kim, D. V., Chuprov-Netochin, R. N., Leonov, S. V., Pustovalova, M. V., Zharkov, D. O. & Makarova, A. V., Nov 2023, In: Biochemistry (Moscow). 88, 11, p. 1933-1943 11 p.

    Research output: Contribution to journal › Article › peer-review

  7. Base Excision DNA Repair in Plants: Arabidopsis and Beyond

    Grin, I. R., Petrova, D. V., Endutkin, A. V., Ma, C., Yu, B., Li, H. & Zharkov, D. O., 29 Sept 2023, In: International Journal of Molecular Sciences. 24, 19, 14746.

    Research output: Contribution to journal › Review article › peer-review

  8. Alternative Mechanisms of Mutagenesis at mCpG Sites during Replication and Repair

    Shilkin, E. S., Petrova, D. V., Zharkov, D. O. & Makarova, A. V., Aug 2023, In: Molecular Biology. 57, 4, p. 584-592 9 p.

    Research output: Contribution to journal › Article › peer-review

  9. Abasic site-peptide cross-links are blocking lesions repaired by AP endonucleases

    Yudkina, A. V., Bulgakov, N. A., Kim, D. V., Baranova, S. V., Ishchenko, A. A., Saparbaev, M. K., Koval, V. V. & Zharkov, D. O., 7 Jul 2023, In: Nucleic Acids Research. 51, 12, p. 6321-6336 16 p., gkad423.

    Research output: Contribution to journal › Article › peer-review

  10. Bypass of Abasic Site-Peptide Cross-Links by Human Repair and Translesion DNA Polymerases

    Yudkina, A. V., Barmatov, A. E., Bulgakov, N. A., Boldinova, E. O., Shilkin, E. S., Makarova, A. V. & Zharkov, D. O., 29 Jun 2023, In: International Journal of Molecular Sciences. 24, 13, 10877.

    Research output: Contribution to journal › Article › peer-review

  11. Genome-wide analysis of WD40 protein family and functional characterization of BvWD40-82 in sugar beet

    Wu, Z., Zhang, T., Li, J., Chen, S., Grin, I. R., Zharkov, D. O., Yu, B. & Li, H., 2 Jun 2023, In: Frontiers in Plant Science. 14, 1185440.

    Research output: Contribution to journal › Article › peer-review

  12. Correlated Target Search by Vaccinia Virus Uracil-DNA Glycosylase, a DNA Repair Enzyme and a Processivity Factor of Viral Replication Machinery

    Diatlova, E. A., Mechetin, G. V., Yudkina, A. V., Zharkov, V. D., Torgasheva, N. A., Endutkin, A. V., Shulenina, O. V., Konevega, A. L., Gileva, I. P., Shchelkunov, S. N. & Zharkov, D. O., 23 May 2023, In: International Journal of Molecular Sciences. 24, 11, 9113.

    Research output: Contribution to journal › Article › peer-review

  13. Activity of nsp14 Exonuclease from SARS-CoV-2 towards RNAs with Modified 3'-Termini

    Yuyukina, S. K., Barmatov, A. E., Bizyaev, S. N., Stetsenko, D. A., Sergeeva, O. V., Zatsepin, T. S. & Zharkov, D. O., Apr 2023, In: Doklady. Biochemistry and biophysics. 509, 1, p. 65-69 5 p.

    Research output: Contribution to journal › Article › peer-review

  14. Factors Affecting the Stability of the Trimer of 2'-Deoxyuridine 5'-Triphosphate Nucleotide Hydrolase from Escherichia coli

    Yudkina, A. V., Kovalenko, E. A., Endutkin, A. V., Panferova, E. P., Kirilenko, A. A., Kokhanenko, A. A. & Zharkov, D. O., Apr 2023, In: Molecular Biology. 57, 2, p. 312-319 8 p.

    Research output: Contribution to journal › Article › peer-review

  15. Mechanisms of the Specificity of the CRISPR/Cas9 System in Genome Editing

    Kulishova, L. M., Vokhtantsev, I. P., Kim, D. V. & Zharkov, D. O., Apr 2023, In: Molecular Biology. 57, 2, p. 258-271 14 p.

    Research output: Contribution to journal › Article › peer-review

  16. Dynamics of 8-Oxoguanine in DNA: Decisive Effects of Base Pairing and Nucleotide Context

    Ovcherenko, S. S., Shernyukov, A. V., Nasonov, D. M., Endutkin, A. V., Zharkov, D. O. & Bagryanskaya, E. G., 15 Mar 2023, In: Journal of the American Chemical Society. 145, 10, p. 5613-5617 5 p.

    Research output: Contribution to journal › Article › peer-review

  17. Факторы, влияющие на стабильность тримерной формы 2'-дезоксиуридин-5'-трифосфатнуклеотидгидролазы Escherichia coli

    Yudkina, A. V., Kovalenko, E. A., Endutkin, A. V., Panferova, E. P., Kirilenko, A. A., Kokhanenko, A. A. & Zharkov, D. O., 1 Mar 2023, In: Molekuliarnaia biologiia. 57, 2, p. 330-339 10 p., 17.

    Research output: Contribution to journal › Article › peer-review

  18. Pan-cancer antagonistic inhibition pattern of ATM-driven G2/M checkpoint pathway vs other DNA repair pathways

    Zolotovskaia, M. A., Modestov, A. A., Suntsova, M. V., Rachkova, A. A., Koroleva, E. V., Poddubskaya, E. V., Sekacheva, M. I., Tkachev, V. S., Garazha, A. V., Glusker, A. A., Seryakov, A. P., Vladimirova, U. S., Rumiantsev, P. O., Moisseev, A. A., Zharkov, D. O., Kuzmin, D. V., Zhao, X., Prassolov, V. S., Shegay, P. V., Li, X., & 5 othersSteinbichler, T. B., Kim, E., Sorokin, M. I., Wang, Y. & Buzdin, A. A., Mar 2023, In: DNA Repair. 123, 18 p., 103448.

    Research output: Contribution to journal › Article › peer-review

  19. Fast Recombination of Charge-Transfer State in Organic Photovoltaic Composite of P3HT and Semiconducting Carbon Nanotubes Is the Reason for Its Poor Photovoltaic Performance

    Uvarov, M. N., Kobeleva, E. S., Degtyarenko, K. M., Zinovyev, V. A., Popov, A. A., Mostovich, E. A. & Kulik, L. V., 17 Feb 2023, In: International Journal of Molecular Sciences. 24, 4, 4098.

    Research output: Contribution to journal › Article › peer-review

  20. DNA Damage Response and Repair in Boron Neutron Capture Therapy

    Mechetin, G. V. & Zharkov, D. O., 2 Jan 2023, In: Genes. 14, 1, 127.

    Research output: Contribution to journal › Review article › peer-review

  21. Structural Biology in the Study of Enzyme Catalysis: An Example of DNA Glycosylases

    Жарков, Д. О., 2023, p. 18. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  22. АКТИВНОСТЬ ДНК-ГЛИКОЗИЛАЗ НА НЕКАНОНИЧЕСКИХ СТРУКТУРАХ ДНК

    Дятлова, Е. А., Ерошенко, Д. А. & Жарков, Д. О., 2023, p. 70.

    Research output: Contribution to conference › Abstract › peer-review

  23. Альтернативные механизмы мутагенеза в mCpG-сайтах при репликации и репарации

    Shilkin, E. S., Petrova, D. V., Zharkov, D. O. & Makarova, A. V., 2023, In: Molekuliarnaia biologiia. 57, 4, p. 587-596 10 p., 3.

    Research output: Contribution to journal › Article › peer-review

  24. АНАЛИЗ АКТИВНОСТИ И СПЕЦИФИЧНОСТИ РАЦИОНАЛЬНО СКОНСТРУИРОВАННЫХ ВАРИАНТОВ БЕЛКА CAS9 ИЗ STREPTOCOCCUS PYOGENES

    Вохтанцев, И. П., Кадцын, Е. Д., Аманова, М. М., Бакулина, А. Ю. & Жарков, Д. О., 2023, p. 57. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  25. Биоразнообразие микроорганизмов — источник новых ферментов репарации ДНК

    Жарков, Д. О., 2023, p. 86. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  26. Влияние окислительного повреждения oxoGна стабильность дуплексов ДНК

    Насонов, Д. М., Овчеренко, С. С., Шернюков, А. В., Ендуткин, А. В., Жарков, Д. О. & Багрянская, Е. Г., 2023, p. 181. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  27. ДИНАМИКА ОТКРЫТИЯ ПАР ОСНОВАНИЙ OXOG:C И OXOG:A ПО ДАННЫМ МЕТОДИКИ ЯМР ПЕРЕНОСА НАМАГНИЧЕННОСТИ С ВОДЫ

    Овчеренко, С. С., Насонов, Д. М., Шернюков, А. В., Ендуткин, А. В., Жарков, Д. О. & Багрянская, Е. Г., 2023, p. 377-378. 2 p.

    Research output: Contribution to conference › Abstract › peer-review

  28. Изучение роли C-концевого фрагмента 8-оксогуанин-ДНК-гликозилазы 1 человека (OGG1) в связывании и расщеплении специфических субстратов

    Яковлев, А. О. & Жарков, Д. О., 2023. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  29. Изучение состояния ионизируемых групп в активном центре комплекса Fpg-ДНК методом ЭПР

    Литвинов, И. А., Овчеренко, С. С., Булгаков, Н. А., Кирилюк, И. А., Жарков, Д. О. & Багрянская, Е. Г., 2023, p. 175. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  30. МЕХАНИЗМ ДЕЙСТВИЯ ДНК-ПОЛИМЕРАЗ НА СУБСТРАТАХ С МОДИФИЦИРОВАННЫМИ АП-САЙТАМИ

    Юдкина, А. В., Булгаков, Н. А., Шилкин, Е. С., Болдинова, Е. О., Макарова, А. В., Ким, Д. В. & Жарков, Д. О., 2023, p. 161. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  31. Механизм прохождения модифицированных АП-сайтов ДНК-полимеразами

    Юдкина, А. В. & Жарков, Д. О., 2023, p. 93. 1 p.

    Research output: Contribution to conference › Abstract

  32. МЕХАНИЗМЫ ДНК-ГЛИКОЗИЛАЗ И ПРОБЛЕМА «ИЗБЫТОЧНЫХ РЕАКЦИЙ»

    Жарков, Д. О., 2023, p. 79. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  33. Механизмы специфичности системы CRISPR/Cas9 в геномном редактировании

    Kulishova, L. M., Vokhtantsev, I. P., Kim, D. V. & Zharkov, D. O., 2023, In: Molekuliarnaia biologiia. 57, 2, p. 269-284 16 p., 12.

    Research output: Contribution to journal › Article › peer-review

  34. ОСНОВЫ БЕЛКОВОЙ ИНЖЕНЕРИИ

    Юдкина, А. В., Петрова, Д. В., Торгашева, Н. А., Вохтанцев, И. П., Дятлова, Е. А., Ендуткин, А. В., Байков, И. К., Дворникова, А. П. & Жарков, Д. О., 2023, (Accepted/In press) Редакционно-издательский центр НГУ. 178 p.

    Research output: Book/Report › Teaching materials

  35. Передвижение ферментов репарации по ДНК: in vitro vs in vivo

    Жарков, Д. О. & Дятлова, Е. А., 2023. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  36. СУБСТРАТНАЯ СПЕЦИФИЧНОСТЬ ФЕРМЕНТОВ ЭКСЦИЗИОННОЙ РЕПАРАЦИИ ОСНОВАНИЙ В ОТНОШЕНИИ ИСКУССТВЕННЫХ НУКЛЕОТИДОВ, ПРИМЕНЯЕМЫХ В СИНТЕТИЧЕСКОЙ БИОЛОГИИ

    Ендуткин, А. В., Юдкина, А. В., Барматов, А. Е. & Жарков, Д. О., 2023, p. 74. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  37. ФАКТОРЫ, ВЛИЯЮЩИЕ НА СТАБИЛЬНОСТЬ ТРИМЕРНОЙ ФОРМЫ 2›ДЕЗОКСИУРИДИН-5›-ТРИФОСФАТНУКЛЕОТИДГИДРОЛАЗЫ ESCHERICHIA COLI

    Кириленко, А. А., Коваленко, Е. А., Юдкина, А. В., Ендуткин, А. В., Панфёрова, Е. П., Коханенко, А. А. & Жарков, Д. О., 2023, p. 184-185. 2 p.

    Research output: Contribution to conference › Abstract › peer-review

  38. 2022

  39. Natural Nucleoside Modifications in Guide RNAs Can Modulate the Activity of the CRISPR-Cas9 System In Vitro.

    Prokhorova, D. V., Vokhtantsev, I. P., Tolstova, P. O., Zhuravlev, E. S., Kulishova, L. M., Zharkov, D. O. & Stepanov, G. A., Dec 2022, In: The CRISPR journal. 5, 6, p. 799-812 14 p.

    Research output: Contribution to journal › Article › peer-review

  40. Improving Stability and Specificity of CRISPR/Cas9 System by Selective Modification of Guide RNAs with 2'-fluoro and Locked Nucleic Acid Nucleotides

    Sakovina, L., Vokhtantsev, I., Vorobyeva, M., Vorobyev, P. & Novopashina, D., 3 Nov 2022, In: International Journal of Molecular Sciences. 23, 21, 13460.

    Research output: Contribution to journal › Article › peer-review

  41. Cloning and characterization of the major AP endonuclease from Staphylococcus aureus

    Turgimbayeva, A., Zein, U., Zharkov, D. O., Ramankulov, Y., Saparbaev, M. & Abeldenov, S., Nov 2022, In: DNA Repair. 119, 10 p., 103390.

    Research output: Contribution to journal › Article › peer-review

  42. Recognition of a Clickable Abasic Site Analog by DNA Polymerases and DNA Repair Enzymes

    Endutkin, A. V., Yudkina, A. V., Zharkov, T. D., Kim, D. V. & Zharkov, D. O., Nov 2022, In: International Journal of Molecular Sciences. 23, 21, 13353.

    Research output: Contribution to journal › Article › peer-review

  43. Distinct Mechanisms of Target Search by Endonuclease VIII-like DNA Glycosylases

    Diatlova, E. A., Mechetin, G. V. & Zharkov, D. O., Oct 2022, In: Cells. 11, 20, 3192.

    Research output: Contribution to journal › Article › peer-review

  44. Mechanisms of Coronavirus Genome Stability As Potential Targets for Antiviral Drugs

    Yuyukina, S. K. & Zharkov, D. O., Aug 2022, In: Herald of the Russian Academy of Sciences. 92, 4, p. 470-478 9 p.

    Research output: Contribution to journal › Article › peer-review

  45. Noncatalytic Domains in DNA Glycosylases

    Torgasheva, N. A., Diatlova, E. A., Grin, I. R., Endutkin, A. V., Mechetin, G. V., Vokhtantsev, I. P., Yudkina, A. V. & Zharkov, D. O., 1 Jul 2022, In: International Journal of Molecular Sciences. 23, 13, 7286.

    Research output: Contribution to journal › Review article › peer-review

  46. Характеристика деметилирующей ДНК-гликозилазы ROS1 из Nicotiana tabacum L

    Петрова, Д. В., Пермякова, Н. В., Грин, И. Р. & Жарков, Д. О., Jul 2022, In: Вавиловский журнал генетики и селекции. 26, 4, p. 341-348 8 p., 1.

    Research output: Contribution to journal › Article › peer-review

  47. Symmetric Spirenes: Promising Building Blocks for New Generation Opto-Electronic Materials

    Шеповалов, К. М., Пешков, Р. Ю., Бенасси, Э. & Мостович, Е. А., 20 Jun 2022, In: Physical Chemistry Chemical Physics. 24, 27, p. 16836-16851 16 p.

    Research output: Contribution to journal › Article › peer-review

  48. Механизмы обеспечения стабильности генома коронавирусов как потенциальные мишени для противовирусных средств

    Ююкина, С. К. & Жарков, Д. О., 14 Mar 2022, In: Вестник РАН. 92, 8, p. 737-746 10 p., 5.

    Research output: Contribution to journal › Article › peer-review

  49. P2O5-Promoted Cyclization of Di[aryl(hetaryl)methyl] Malonic Acids as a Pathway to Fused Spiro[4.4]nonane-1,6-Diones

    Ivanov, K. S., Riesebeck, T., Skolyapova, A., Liakisheva, I., Kazantsev, M. S., Sonina, A. A., Peshkov, R. Y. & Mostovich, E. A., 4 Mar 2022, In: Journal of Organic Chemistry. 87, 5, p. 2456-2469 14 p.

    Research output: Contribution to journal › Article › peer-review

  50. Miscoding and DNA Polymerase Stalling by Methoxyamine-Adducted Abasic Sites

    Yudkina, A. V. & Zharkov, D. O., 21 Feb 2022, In: Chemical Research in Toxicology. 35, 2, p. 303-314 12 p.

    Research output: Contribution to journal › Article › peer-review

  51. A Low-Activity Polymorphic Variant of Human NEIL2 DNA Glycosylase

    Kakhkharova, Z. I., Zharkov, D. O. & Grin, I. R., 1 Feb 2022, In: International Journal of Molecular Sciences. 23, 4, 2212.

    Research output: Contribution to journal › Article › peer-review

  52. Dataset for dynamics and conformational changes in human NEIL2 protein analyzed by integrative structural biology approach

    Zhdanova, P. V., Ishchenko, A. A., Chernonosov, A. A., Zharkov, D. O. & Koval, V. V., Feb 2022, In: Data in Brief. 40, 107760.

    Research output: Contribution to journal › Article › peer-review

  53. Stalling of Eukaryotic Translesion DNA Polymerases at DNA-Protein Cross-Links

    Yudkina, A. V., Shilkin, E. S., Makarova, A. V. & Zharkov, D. O., Feb 2022, In: Genes. 13, 2, 166.

    Research output: Contribution to journal › Article › peer-review

  54. Dynamics and Conformational Changes in Human NEIL2 DNA Glycosylase Analyzed by Hydrogen/Deuterium Exchange Mass Spectrometry

    Zhdanova, P. V., Ishchenko, A. A., Chernonosov, A. A., Zharkov, D. O. & Koval, V. V., 30 Jan 2022, In: Journal of Molecular Biology. 434, 2, 167334.

    Research output: Contribution to journal › Article › peer-review

  55. Azo dyes containing 1,3,4-thiadiazole fragment: Synthesis and properties

    Selivanova, G., Skolyapova, A., Wang, J., Karpova, E., Shundrina, I., Bagryanskaya, I. & Amosov, E., 28 Jan 2022, In: New Journal of Chemistry. 46, 4, p. 1929-1942 14 p.

    Research output: Contribution to journal › Article › peer-review

  56. Effect of DNA Methylation on the 3′→5′ Exonuclease Activity of Major Human Abasic Site Endonuclease APEX1

    Endutkin, A. V., Yatsenko, D. D. & Zharkov, D. O., Jan 2022, In: Biochemistry (Moscow). 87, 1, p. 10-20 11 p., 1.

    Research output: Contribution to journal › Article › peer-review

  57. Base excision repair in non-canonical DNA structures

    Дятлова, Е. А., Ерошенко, Д. А. & Жарков, Д. О., 2022, p. 977-978. 2 p.

    Research output: Contribution to conference › Abstract › peer-review

  58. Bioorthogonality in the light of cell defense mechanisms: Interaction of non-natural nucleic acids with the base excision DNA repair system

    Ендуткин, А. В., Юдкина, А. В. & Жарков, Д. О., 2022, p. 982. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  59. Interaction of DNA replication and DNA repair systems with AP sites adducts with proteins, peptides and low-molecular-weight compounds

    Юдкина, А. В., Шилкин, Е. С., Болдинова, Е. О., Макарова, А. В., Дворникова, А. П., Булгаков, Н. А., Ким, Д. В. & Жарков, Д. О., 2022, p. 1026. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  60. Structure and function evolution in DNA repair

    Жарков, Д. О., 2022, p. 1027. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  61. Transcriptional mutagenesis-based reporter system for the analysis of DNA repair

    Ким, Д. В., Khobta, A. & Жарков, Д. О., 2022, p. 987. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  62. Активность экзонуклеазы nsp14 вируса SARS-CoV-2 по отношению к РНК с модифицированными 3′-концевыми нуклеотидами

    Ююкина, С. К., 2022, p. 103. 1 p.

    Research output: Contribution to conference › Abstract

  63. Влияние метилирования ДНК на 3′→5′-экзонуклеазную активность основной апурин-апиримидиновой эндонуклеазы человека APEX1

    Ендуткин, А. В., Яценко, Д. Д. & Жарков, Д. О., 2022, In: Биохимия. 87, 1, p. 3-15 13 p., 1.

    Research output: Contribution to journal › Article › peer-review

  64. Генетические конструкции для исследования транскрипционного мутагенеза и репарации 8-оксогуанина в клетках человека

    Чуприкова, М. С. & Ким, Д. В., 2022, p. 99. 1 p.

    Research output: Contribution to conference › Abstract

  65. Генотоксичность и механизмы репарации ДНК-пептидных сшивок с АП-сайтами

    Юдкина, А. В., Булгаков, Н. А., Ким, Д. В. & Жарков, Д. О., 2022, p. 728. 1 p.

    Research output: Contribution to conference › Abstract

  66. Ингибиторы ДНК-гликозилаз как потенциальные терапевтические препараты

    Жарков, Д. О., 2022, p. 41. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  67. Модифицированные направляющие РНК для создания специфичной и регулируемой системы CRISPR/Cas9

    Саковина, Л. В., Вохтанцев, И. П. & Новопашина, Д. С., 2022, p. 656. 1 p.

    Research output: Contribution to conference › Abstract

  68. Оптимизация экспрессии и тестирования активности ДНК-гликозилазы MUTYH млекопитающих

    Кручинин, А. А., Шилкин, Е. С., Жарков, Д. О. & Макарова, А. В., 2022, p. 125-126. 2 p.

    Research output: Contribution to conference › Abstract

  69. Химиотерапевтические подходы в фармакологии : в 2 ч.: учеб.-метод. пособие: Ч. I. Синтез нуклеотидов, репликация, клеточное деление.

    Жарков, Д. О. & Дворникова, А. П., 2022, Редакционно-издательский центр НГУ. 66 p.

    Research output: Book/Report › Teaching materials › peer-review

  70. Циклические направляющие РНК для создания фотоактивируемой системы CRISPR/Cas9

    Иванская, Е. В., Саковина, Л. В., Горленко, Е. С., Вохтанцев, И. П. & Новопашина, Д. С., 2022, p. 160. 1 p.

    Research output: Contribution to conference › Abstract

  71. Циклические направляющие РНК как компоненты фоторегулируемой системы геномного редактирования CRISPR/Cas9

    Иванская, Е. В., Саковина, Л. В., Горленко, Е. С., Вохтанцев, И. П. & Новопашина, Д. С., 2022, p. 182. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  72. 2021

  73. Translesion activity of PrimPol on DNA with cisplatin and DNA–protein cross-links

    Boldinova, E. O., Yudkina, A. V., Shilkin, E. S., Gagarinskaya, D. I., Baranovskiy, A. G., Tahirov, T. H., Zharkov, D. O. & Makarova, A. V., Dec 2021, In: Scientific Reports. 11, 1, 17588.

    Research output: Contribution to journal › Article › peer-review

  74. A New Class of Uracil-DNA Glycosylase Inhibitors Active against Human and Vaccinia Virus Enzyme

    Grin, I. R., Mechetin, G., Kasymov, R. D., Diatlova, E. A., Yudkina, A., Shchelkunov, S. N., Gileva, I. P., Denisova, A. A., Stepanov, G. A., Chilov, G. G. & Zharkov, D. O., 1 Nov 2021, In: Molecules. 26, 21, 15 p., 6668.

    Research output: Contribution to journal › Article › peer-review

  75. Photoactivatable nanocrispr/cas9 system based on crrna reversibly immobilized on carbon nanoparticles

    Semikolenova, O., Sakovina, L., Akhmetova, E., Kim, D., Vokhtantsev, I., Golyshev, V., Vorobyeva, M., Novopashin, S. & Novopashina, D., 1 Oct 2021, In: International Journal of Molecular Sciences. 22, 20, 10919.

    Research output: Contribution to journal › Article › peer-review

  76. 2’-Модифицированные направляющие РНК как компоненты системы геномного редактирования CRISPR/Cas9

    Саковина, Л. В., Вохтанцев, И. П. & Новопашина, Д. С., Oct 2021, p. 332. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  77. Кодирующие свойства метоксиамина — ингибитора репарации ДНК с противоопухолевой активностью

    Юдкина, А. В. & Жарков, Д. О., Oct 2021, p. 401. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  78. DNA glycosylases for 8-oxoguanine repair in Staphylococcus aureus

    Endutkin, A. V., Panferova, E. P., Barmatov, A. E. & Zharkov, D. O., Sept 2021, In: DNA Repair. 105, p. 103160 103160.

    Research output: Contribution to journal › Article › peer-review

  79. Mild phenotype of knockouts of the major apurinic/apyrimidinic endonuclease APEX1 in a non-cancer human cell line

    Kim, D. V., Kulishova, L. M., Torgasheva, N. A., Melentyev, V. S., Dianov, G. L., Medvedev, S. P., Zakian, S. M. & Zharkov, D. O., Sept 2021, In: PLoS ONE. 16, 9 September, e0257473.

    Research output: Contribution to journal › Article › peer-review

  80. Репарация ДНК: за пределами модельных микроорганизмов

    Жарков, Д. О., Sept 2021, p. 33. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  81. Структура новой атипичной ДНК-гликозилазы суперсемейства H2TH из Bacteroides thetaiotaomicron

    Юдкина, А. В., Гарсиа-Диаз, М. & Жарков, Д. О., Sept 2021, p. 286-287. 2 p.

    Research output: Contribution to conference › Abstract › peer-review

  82. Характеристика GO-системы Staphylococcus aureus как потенциальной мишени для комбинированной антибиотикотерапии

    Ендуткин, А. В. & Жарков, Д. О., Sept 2021, p. 176-176. 2 p.

    Research output: Contribution to conference › Abstract › peer-review

  83. Mild phenotype of knockouts of the major apurinic/apyrimidinic endonuclease APEX1 in a noncancer human cell line

    Ким, Д. В., Кулишова, Л. М., Торгашева, Н. А. & Жарков, Д. О., Aug 2021, p. 92. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  84. Evolutionary Origins of DNA Repair Pathways: Role of Oxygen Catastrophe in the Emergence of DNA Glycosylases

    Prorok, P., Grin, I. R., Matkarimov, B. T., Ishchenko, A. A., Laval, J., Zharkov, D. O. & Saparbaev, M., Jul 2021, In: Cells. 10, 7, 1591.

    Research output: Contribution to journal › Review article › peer-review

  85. Influence of modified nucleotides on the activity of the CRISPR/Cas9 system in vitro

    Prokhorova, D., Zhuravlev, E., Tolstova, P. & Stepanov, G., Jul 2021, In: FEBS Open Bio. 11, p. 285-285 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  86. Miscoding properties of abasic site adducts with methoxyamine, an antitumor base excision repair inhibitor

    Yudkina, A., Shilkin, E., Boldinova, E., Makarova, A. & Zharkov, D., Jul 2021, In: FEBS Open Bio. 11, p. 87-87 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  87. GO-система: путь репарации ДНК для борьбы с окислительными повреждениями

    Endutkin, A. V. & Zharkov, D. O., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 223-242 20 p., 5.

    Research output: Contribution to journal › Review article › peer-review

  88. Изучение свойств рекомбинантной эндонуклеазы IV Mycobacterium tuberculosis

    Dymova, M. A., Endutkin, A. V., Polunovsky, V. V., Zakabunin, A. I., Khrapov, E. A., Torgasheva, N. A., Yudkina, A. V., Mechetin, G. V., Filipenko, M. L. & Zharkov, D. O., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 258-268 11 p., 7.

    Research output: Contribution to journal › Article › peer-review

  89. Матричные свойства 5-метил-2'-дезоксицитидина и 5-гидроксиметил-2'-дезоксицитидина в реакциях с транслезионными и репаратичными ДНК-полимеразами человека

    Shilkin, E. S., Petrova, D. V., Poltorachenko, V. A., Boldinova, E. O., Zharkov, D. O. & Makarova, A. V., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 305-311 7 p., 11.

    Research output: Contribution to journal › Article › peer-review

  90. Characterization of Recombinant Endonuclease IV from Mycobacterium tuberculosis

    Dymova, M. A., Endutkin, A. V., Polunovsky, V. V., Zakabunin, A. I., Khrapov, E. A., Torgasheva, N. A., Yudkina, A. V., Mechetin, G. V., Filipenko, M. L. & Zharkov, D. O., Mar 2021, In: Molecular Biology. 55, 2, p. 225-233 9 p.

    Research output: Contribution to journal › Article › peer-review

  91. GO System, a DNA Repair Pathway to Cope with Oxidative Damage

    Endutkin, A. V. & Zharkov, D. O., Mar 2021, In: Molecular Biology. 55, 2, p. 193-210 18 p.

    Research output: Contribution to journal › Review article › peer-review

  92. Photoactivatable CRISPR/Cas9 System

    Akhmetova, E. A., Golyshev, V. M., Vokhtantcev, I. P., Meschaninova, M. I., Venyaminova, A. G. & Novopashina, D. S., Mar 2021, In: Russian Journal of Bioorganic Chemistry. 47, 2, p. 496-504 9 p.

    Research output: Contribution to journal › Article › peer-review

  93. Template Properties of 5-Methyl-2'-Deoxycytidine and 5-Hydroxymethyl-2'-Deoxycytidine in Reactions with Human Translesion and Reparative DNA Polymerases

    Shilkin, E. S., Petrova, D. V., Poltorachenko, V. A., Boldinova, E. O., Zharkov, D. O. & Makarova, A. V., Mar 2021, In: Molecular Biology. 55, 2, p. 267-272 6 p.

    Research output: Contribution to journal › Article › peer-review

  94. Активность ДНК-полимераз х-семейства человека на метилированных ДНК-матрицах

    Хрячкова, А. Ю., Шилкин, Е. С., Петрова, Д. В., Жарков, Д. О. & Макарова, А. В., Feb 2021, p. 65. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  95. Molecular dynamics approach to identification of new OGG1 cancer-associated somatic variants with impaired activity

    Popov, A. V., Endutkin, A. V., Yatsenko, D. D., Yudkina, A. V., Barmatov, A. E., Makasheva, K. A., Raspopova, D. Y., Diatlova, E. A. & Zharkov, D. O., 1 Jan 2021, In: Journal of Biological Chemistry. 296, 100229.

    Research output: Contribution to journal › Article › peer-review

  96. Биологические свойства вируса гриппа H6N8‐субтипа, выделенного от диких птиц на юге Западной Сибири

    Li, X., Dubovitskiy, N. A., Derko, A. A., Glushchenko, A. V., Sobolev, I. A., Druzyaka, A. V., Medzhidova, M. M., Musinova, E. M., Sharshov, K. A. & Shestopalov, A. M., Jan 2021, In: South of Russia: Ecology, Development. 16, 1 (58), p. 45-52 8 p., 5.

    Research output: Contribution to journal › Article › peer-review

  97. Boron-containing nucleosides as tools for boron-neutron capture therapy

    Zharkov, D. O., Yudkina, A., Riesebeck, T., Loshchenova, P. S., Mostovich, E. A. & Dianov, G. L., 2021, In: American journal of cancer research. 11, 10, p. 4668-4682 15 p.

    Research output: Contribution to journal › Review article › peer-review

  98. 2020

  99. Antitumour activity of the ribonuclease binase from bacillus pumilus in the RLS40 tumour model is associated with the reorganisation of the miRNA network and reversion of cancer‐related cascades to normal functioning

    Mohamed, I. S. E., Sen’kova, A. V., Nadyrova, A. I., Savin, I. A., Markov, A. V., Mitkevich, V. A., Makarov, A. A., Ilinskaya, O. N., Mironova, N. L. & Zenkova, M. A., Nov 2020, In: Biomolecules. 10, 11, p. 1-20 20 p., 1509.

    Research output: Contribution to journal › Article › peer-review

  100. Displacement of Slow-Turnover DNA Glycosylases by Molecular Traffic on DNA

    Yudkina, A. V., Endutkin, A. V., Diatlova, E. A., Moor, N. A., Vokhtantsev, I. P., Grin, I. R. & Zharkov, D. O., Aug 2020, In: Genes. 11, 8, p. 1-21 21 p., 866.

    Research output: Contribution to journal › Article › peer-review

  101. EGFP Reporters for Direct and Sensitive Detection of Mutagenic Bypass of DNA Lesions

    Rodriguez-Alvarez, M., Kim, D. & Khobta, A., 13 Jun 2020, In: Biomolecules. 10, 6, p. 1-19 19 p., 902.

    Research output: Contribution to journal › Article › peer-review

  102. Self-cleaning photoactive cotton fabric modified with nanocrystalline TiO2 for efficient degradation of volatile organic compounds and DNA contaminants

    Solovyeva, M., Selishchev, D., Cherepanova, S., Stepanov, G., Zhuravlev, E., Richter, V. & Kozlov, D., 15 May 2020, In: Chemical Engineering Journal. 388, 13 p., 124167.

    Research output: Contribution to journal › Article › peer-review

  103. Mechanisms of Sugar Beet Response to Biotic and Abiotic Stresses

    Yu, B., Chen, M., Grin, I. & Ma, C., 8 May 2020, Mechanisms of Genome Protection and Repair. Zharkov, D. O. (ed.). Springer, Cham, Vol. 1241. p. 167-194 28 p. (Advances in experimental medicine and biology).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  104. Protein Engineering of DNA-Dependent Enzymes

    Yudkina, A. V. & Zharkov, D. O., 8 May 2020, Mechanisms of Genome Protection and Repair. Zharkov, D. O. (ed.). Springer, Cham, Vol. 1241. p. 19-33 15 p. (Advances in experimental medicine and biology).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  105. Inhibitors of DNA glycosylases as prospective drugs

    Mechetin, G. V., Endutkin, A. V., Diatlova, E. A. & Zharkov, D. O., 28 Apr 2020, In: International Journal of Molecular Sciences. 21, 9, 30 p., 3118.

    Research output: Contribution to journal › Review article › peer-review

  106. Reading Targeted DNA Damage in the Active Demethylation Pathway: Role of Accessory Domains of Eukaryotic AP Endonucleases and Thymine-DNA Glycosylases

    Popov, A. V., Grin, I. R., Dvornikova, A. P., Matkarimov, B. T., Groisman, R., Saparbaev, M. & Zharkov, D. O., 13 Mar 2020, In: Journal of Molecular Biology. 432, 6, p. 1747-1768 22 p.

    Research output: Contribution to journal › Review article › peer-review

  107. Catalytically Competent Conformation of the Active Site of Human 8-Oxoguanine-DNA Glycosylase

    Popov, A. V., Yudkina, A. V., Vorobjev, Y. N. & Zharkov, D. O., 17 Feb 2020, In: Biochemistry (Moscow). 85, 2, p. 192-204 13 p.

    Research output: Contribution to journal › Article › peer-review

  108. Preface

    Zharkov, D. O., 1 Jan 2020, In: Advances in experimental medicine and biology. 1241, p. v

    Research output: Contribution to journal › Editorial › peer-review

  109. Рибонуклеаза Ribonuclease pumilus ингибирует миграцию клеток аденокарциномы двенадцатиперстной кишки человека HuTu 80

    Zelenikhin, P. V., Ead Mohamed, I. S., Nadyrova, A. I., Sirotkina, A. A., Ulyanova, V. V., Mironova, N. L., Mitkevich, V. A., Makarov, A. A., Zenkova, M. A. & Ilinskaya, O. N., 1 Jan 2020, In: Molekuliarnaia biologiia. 54, 1, p. 146-152 7 p.

    Research output: Contribution to journal › Article › peer-review

  110. Bacillus pumilus Ribonuclease Inhibits Migration of Human Duodenum Adenocarcinoma HuTu 80 Cells

    Zelenikhin, P., Mohamed, I. S. E., Nadyrova, A., Sirotkina, A. A., Ulyanova, V. V., Mironova, N. L., Mitkevieh, V. A., Makarov, A. A., Zenkova, M. A. & Ilinskaya, O. N., Jan 2020, In: Molecular Biology. 54, 1, p. 128-133 6 p.

    Research output: Contribution to journal › Article › peer-review

  111. Mechanistic insight into the role of Poly(ADP-ribosyl)ation in DNA topology modulation and response to DNA damage

    Matkarimov, B. T., Zharkov, D. O. & Saparbaev, M. K., Jan 2020, In: Mutagenesis. 35, 1, p. 107-118 12 p.

    Research output: Contribution to journal › Review article › peer-review

  112. Requirements for DNA bubble structure for efficient cleavage by helix-two-turn-helix DNA glycosylases

    Makasheva, K. A., Endutkin, A. V. & Zharkov, D. O., Jan 2020, In: Mutagenesis. 35, 1, p. 119-128 10 p.

    Research output: Contribution to journal › Article › peer-review

  113. Activity of DNA glycosylases on non-canonical DNA substrates

    Дятлова, Е. А. & Жарков, Д. О., 2020, p. 568. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  114. Chapter 8: Substrate specificities of DNA glycosylases in vitro and in vivo: Substrate specificities of DNA glycosylases in vitro and in vivo

    Ендуткин, А. В. & Жарков, Д. О., 2020, DNA Damage, DNA Repair and Disease: Volume 1. Dizdaroglu, M. & Lloyd, R. S. (eds.). London: Royal Society of Chemistry, Vol. 1. p. 175-203 29 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  115. Molecular dynamic and kinetic characterization of Cas9 mutants for improving specificity of genome editing tools

    Вохтанцев, И. П. & Кадцын, Е. Д., 2020, p. 55. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  116. Platinum polyoxoniobates have a potential as an anticancer agent

    Юдкина, А. В., Вохтанцев, И. П., Соколов, М. Н. & Абрамов, П. А., 2020, p. 604. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  117. Preface

    Zharkov, D. O., 2020, MECHANISMS OF GENOME PROTECTION AND REPAIR. Zharkov, DO. (ed.). Springer International Publishing AG, p. V-V 1 p. (Advances in Experimental Medicine and Biology; vol. 1241).

    Research output: Chapter in Book/Report/Conference proceeding › Foreword/postscript › Research › peer-review

  118. Single-nucleotide polymorphisms of hNEIL2 gene: from protein structure to functions in base excision DNA repair

    Каххарова, З. И., Грин, И. Р. & Петрова, Д. В., 2020, p. 574. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  119. The influence of ligand structure of ruthenium nitrosyl complexes on their biological activity

    Хантакова, Д. В. & Грин, И. Р., 2020, p. 577. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  120. The role of DNA repair in active DNA demethylation is studded by the construct based on the CRISPR/Cas9 system

    Каххарова, З. И., Грин, И. Р. & Хантакова, Д. В., 2020, p. 575. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  121. Активность вариантов фермента формамидопиримидин-ДНК-гликозилазы с измененными аминокислотными остатками в центре связывания поврежденного основания

    Булгаков, Н. А., 2020, p. 25. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  122. Кинетика удаления 5-метилцитозина апурин-апиримидиновой эндонуклеазой APEX1 человека в условиях различных интермедиатов репарации ДНК

    Яценко, Д. Д. & Ендуткин, А. В., 2020, p. 54. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  123. Методы редактирования генов и геномов

    Аббат, А. В., Александрушкина, Н. А., Андреенков, О. В., Артюхов, А. С., Байрамова, Э. М., Балацкий, А. В., Березиков, Е. В., Василенко, Ю. С., Васильев, А. В., Васильев, П. А., Волкова, Е. И., Воротеляк, Е. А., Вохтанцев, И. П., Вударски, Я., Вяткин, Ю. В., Георгиев, П. Г., Герасимова, С. В., Гершович, П. М., Гольцова, А. С., Гущин, Д. Ю., & 60 othersДавлетшина, Г. И., Дашинимаев, Э. Б., Дейнеко, Е. В., Демаков, С. А., Дианов, Г. Л., Дыйканов, Д. Т., Евсеева, М. Н., Егорова, А. А., Елисафенко, Е. А., Ендуткин, А. В., Жарков, Д. О., Живень, М. К., Журавлев, Е. С., Загорская, А. А., Закиян, С. М., Захарова, И. С., Зотова, А. А., Иванова, К. А., Карагуяр, М. Н., Карпов, В. Л., Коваленко, В. Р., Кулебякин, К. Ю., Кулишова, Л. М., Лактионов, П. П., Мазуров, Д. В., Макаревич, П. И., Максименко, О. Г., Маланханова, Т. Б., Малахова, А. А., Маренкова, Т. В., Матвеева, А. М., Медведев, С. П., Мещерякова, Н. В., Пермякова, Н. В., Прокофьев, А. В., Рождественский, Т. С., Романов, С. Е., Ростовцева, А. И., Рубцов, Ю. П., Рысенкова, К. Д., Семина, Е. В., Сидорчук, Ю. В., Скрябин, Б. В., Скрябина, М. Н., Смирнова, А. М., Сорокин, М. А., Степанов, Г. А., Стуканев, В. К., Торгашева, Н. А., Тюрин-Кузьмин, П. А., Устьянцева, Е. И., Устьянцев, К. В., Чичерин, И. В., Шарипова, Д. В., Шевченко, А. И., Шепелев, М. В., Шерстюк, В. В., Шмакова, А. А., Щепетов, Д. М. & Юрлова, Е. В., 2020, Новосибирск: ФГУП "Издательство СО РАН". 550 p.

    Research output: Book/Report › Book › Research › peer-review

  124. Получение модифицированных ДНК-субстратов для исследования механизма действия нуклеаз геномного редактирования

    Вохтанцев, И. П., Ендуткин, А. В., Кулишова, Л. М., Торгашева, Н. А., Дианов, Г. Л. & Жарков, Д. О., 2020, Методы редактирования генов и геномов. Закиян, С. М., Медведев, С. П., Дементьева, Е. В. & Власов, В. В. (eds.). Новосибирск: ФГУП "Издательство СО РАН", p. 485-493 9 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  125. Роль ключевого белка мисматч репарации млекопитающих MSH2 в эпигенетических изменениях при онкогенезе

    Каххарова, З. И. & Грин, И. Р., 2020, p. 79. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  126. Экзосомы молока лошади: выделение, микроскопический и биохимический анализ, перспективы использования

    SEDYKH, S. E., KULESHOVA, A. E., PURVINSH, L. V., BURKOVA, E. E., GRIGORIEVA, A. E., EVTUSHENKO, E. G., STEPANOV, G. A., RYABCHIKOVA, E. I. & NEVINSKII, G. A., 2020, In: Biotekhnologiya. 36, 5, p. 62-71 10 p.

    Research output: Contribution to journal › Article › peer-review

  127. 2019

  128. Photoinduced inhibition of DNA repair enzymes and the possible mechanism of photochemical transformations of the ruthenium nitrosyl complex [RuNO(β-Pic)2(NO2)2OH

    Mikhailov, A. A., Khantakova, D. V., Nichiporenko, V. A., Glebov, E. M., Grivin, V. P., Plyusnin, V. F., Yanshole, V. V., Petrova, D. V., Kostin, G. A. & Grin, I. R., 11 Dec 2019, In: Metallomics : integrated biometal science. 11, 12, p. 1999-2009 11 p.

    Research output: Contribution to journal › Article › peer-review

  129. Guide RNA modification as a way to improve CRISPR/Cas9-based genome-editing systems

    Filippova, J., Matveeva, A., Zhuravlev, E. & Stepanov, G., 1 Dec 2019, In: Biochimie. 167, p. 49-60 12 p.

    Research output: Contribution to journal › Review article › peer-review

  130. Transient protein–protein complexes in base excision repair

    Endutkin, A. V., Yudkina, A. V., Sidorenko, V. S. & Zharkov, D. O., 22 Nov 2019, In: Journal of Biomolecular Structure and Dynamics. 37, 17, p. 4407-4418 12 p.

    Research output: Contribution to journal › Review article › peer-review

  131. Are small nucleolar RNAs "cRISPRable"? A report on box C/D small nucleolar RNA editing in human cells

    Filippova, J. A., Matveeva, A. M., Zhuravlev, E. S., Balakhonova, E. A., Prokhorova, D. V., Malanin, S. J., Mahmud, R. S., Grigoryeva, T. V., Anufrieva, K. S., Semenov, D. V., Vlassov, V. V. & Stepanov, G. A., 4 Nov 2019, In: Frontiers in Pharmacology. 10, 16 p., 01246.

    Research output: Contribution to journal › Article › peer-review

  132. Platinum Polyoxoniobates Form Adducts with DNA

    Yudkina, A. V., Sokolov, M. N., Abramov, P. A., Grin, I. R. & Zharkov, D. O., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 641-646 6 p.

    Research output: Contribution to journal › Article › peer-review

  133. Relative Efficiency of Recognition of 5-Methylcytosine and 5-Hydroxymethylcytosine by Methyl-Dependent DNA Endonuclease GlaI

    Petrova, D. V., Naumenko, M. B., Khantakova, D. V., Grin, I. R. & Zharkov, D. O., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 625-629 5 p.

    Research output: Contribution to journal › Article › peer-review

  134. Systems of Delivery of CRISPR/Cas9 Ribonucleoprotein Complexes for Genome Editing

    Amirkhanov, R. N. & Stepanov, G. A., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 431-437 7 p.

    Research output: Contribution to journal › Review article › peer-review

  135. Mechanism of stimulation of DNA binding of the transcription factors by human apurinic/apyrimidinic endonuclease 1, APE1

    Bazlekowa-Karaban, M., Prorok, P., Baconnais, S., Taipakova, S., Akishev, Z., Zembrzuska, D., Popov, A. V., Endutkin, A. V., Groisman, R., Ishchenko, A. A., Matkarimov, B. T., Bissenbaev, A., Le Cam, E., Zharkov, D. O., Tudek, B. & Saparbaev, M., 1 Oct 2019, In: DNA Repair. 82, p. 102698 18 p., 102698.

    Research output: Contribution to journal › Article › peer-review

  136. Isoforms of base excision repair enzymes produced by alternative splicing

    Boldinova, E. O., Khairullin, R. F., Makarova, A. V. & Zharkov, D. O., 3 Jul 2019, In: International Journal of Molecular Sciences. 20, 13, 22 p., 3279.

    Research output: Contribution to journal › Review article › peer-review

  137. Development of constructs based on the CRISPR/Cas9 system for studying the role of non-canonical mismatch repair in editing the epigenome

    Kakhkharova, Z. I., Khantakova, D. V., Petrova, D. V. & Grin, I. R., Jul 2019, In: FEBS Open Bio. 9, p. 399-399 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  138. DNA lesions against genome editing: how Cas9 cleaves the substrates with damages

    Vokhtantsev, I. P., Endutkin, A. V., Kulishova, L. M. & Zharkov, O., Jul 2019, In: FEBS Open Bio. 9, p. 397-397 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  139. Effects of single-nucleotide polymorphisms in human NEIL2 gene on functional role in DNA repair

    Kakhkharova, Z. I., Khantakova, D. V. & Grin, I. R., Jul 2019, In: FEBS Open Bio. 9, p. 157-158 2 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  140. Photocleavable guide RNAs for controllable genome editing with CRISPR/Cas9 system

    Novopashina, D., Khabardina, E., Vokhtantsev, I., Kim, D., Venyaminova, A. & Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 400-400 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  141. Structural and biochemical insights of new atypical Fpg/Nei DNA-glycosylases

    Yudkina, A., Garcia-Diaz, M. & Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 252-252 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  142. The role of transient protein-protein interactions in base excision repair

    Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 254-254 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  143. Critical Sites of DNA Backbone Integrity for Damaged Base Removal by Formamidopyrimidine-DNA Glycosylase

    Endutkin, A. V. & Zharkov, D. O., 18 Jun 2019, In: Biochemistry. 58, 24, p. 2740-2749 10 p.

    Research output: Contribution to journal › Article › peer-review

  144. Antisense Oligonucleotides Immobilized on Silicon-Organic Nanoparticles as a Tool for Prolonged Correction of Hypertensive States

    Levina, A. S., Repkova, M. N., Klimov, L. O., Ryazanova, M. A., Markel, A. L. & Zarytova, V. F., 15 May 2019, In: Bulletin of Experimental Biology and Medicine. 167, 1, p. 116-119 4 p.

    Research output: Contribution to journal › Article › peer-review

  145. Reading and misreading 8-oxoguanine, a paradigmatic ambiguous nucleobase

    Yudkina, A. V., Shilkin, E. S., Endutkin, A. V., Makarova, A. V. & Zharkov, D. O., 1 May 2019, In: Crystals. 9, 5, 31 p., 269.

    Research output: Contribution to journal › Article › peer-review

  146. Conformational Dynamics of Damage Processing by Human DNA Glycosylase NEIL1

    Kladova, O. A., Grin, I. R., Fedorova, O. S., Kuznetsov, N. A. & Zharkov, D. O., 15 Mar 2019, In: Journal of Molecular Biology. 431, 6, p. 1098-1112 15 p.

    Research output: Contribution to journal › Article › peer-review

  147. Observations on Protecting Groups in the Synthesis of Mono- and Triphosphates of Amino Alcohols

    Sherstyuk, Y. V., Chalova, P. V., Silnikov, V. N. & Abramova, T. V., 4 Mar 2019, In: Organic Preparations and Procedures International. 51, 2, p. 182-191 10 p.

    Research output: Contribution to journal › Article › peer-review

  148. Base Excision DNA Repair Deficient Cells: From Disease Models to Genotoxicity Sensors

    Kim, D. V., Makarova, A. V., Miftakhova, R. R. & Zharkov, D. O., 1 Jan 2019, In: Current Pharmaceutical Design. 25, 3, p. 298-312 15 p.

    Research output: Contribution to journal › Review article › peer-review

  149. abstract OR-3: Fleeting ensembles: Transient protein-protein interactions in DNA repair

    Жарков, Д. О., 2019, In: International Journal of Biomedicine. 9, S1, p. 6-7 2 p.

    Research output: Contribution to journal › Conference article › peer-review

  150. 2018

  151. Aberrant repair initiated by the adenine-DNA glycosylase does not play a role in UV-induced mutagenesis in Escherichia coli

    Zutterling, C., Mursalimov, A., Talhaoui, I., Koshenov, Z., Akishev, Z., Bissenbaev, A. K., Mazon, G., Geacintov, N. E., Gasparutto, D., Groisman, R., Zharkov, D. O., Matkarimov, B. T. & Saparbaev, M., 5 Dec 2018, In: PeerJ. 6, 12, 23 p., 6029.

    Research output: Contribution to journal › Article › peer-review

  152. Brain as a potential target for antisense oligonucleotide treatment of hypertensive disease. Experimental study on the hypertensive ISIAH rat strain

    Levina, A. S., Zarytova, V. F., Repkova, M. N., Klimov, O. L., Seryapina, A. A., Shikina, N. V., Shevelev, O. B. & Markel, A. L., Dec 2018, In: Basic and Clinical Pharmacology and Toxicology. 124, p. 6-7 2 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  153. Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation

    Gruber, D. R., Toner, J. J., Miears, H. L., Shernyukov, A. V., Kiryutin, A. S., Lomzov, A. A., Endutkin, A. V., Grin, I. R., Petrova, D. V., Kupryushkin, M. S., Yurkovskaya, A. V., Johnson, E. C., Okon, M., Bagryanskaya, E. G., Zharkov, D. O. & Smirnov, S. L., 16 Nov 2018, In: Nucleic Acids Research. 46, 20, p. 10827-10839 13 p.

    Research output: Contribution to journal › Article › peer-review

  154. Nucleotide modifications decrease innate immune response induced by synthetic analogs of snRNAs and snoRNAs

    Stepanov, G., Zhuravlev, E., Shender, V., Nushtaeva, A., Balakhonova, E., Mozhaeva, E., Kasakin, M., Koval, V., Lomzov, A., Pavlyukov, M., Malyants, I., Zhorov, M., Kabilova, T., Chernolovskaya, E., Govorun, V., Kuligina, E., Semenov, D. & Richter, V., 2 Nov 2018, In: Genes. 9, 11, 18 p., 531.

    Research output: Contribution to journal › Article › peer-review

  155. ANTISENSE CONTAINING NANOCOMPOSITES IN HYPERTENSION TREATMENT IN ISIAH RATS

    Klimov, L., Ryazanova, M., Levina, A. & Markel, A., Oct 2018, In: Journal of Hypertension. 36, p. E18-E18 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  156. NANOCOMPOSITE (SI-ODN-II), CONTAINING ANTISENSE OLIGONUCLEOTIDES TARGETED TO MRNA OF THE BETA-1-ADRENORECEPTORS FOR HYPERTENSION THERAPY IN RATS WITH STRESS-SENSITIVE ARTERIAL HYPERTENSION (ISIAH RATS)

    Ryazanova, M., Klimov, L., Seryapina, A., Zarytova, V., Repkova, M., Levina, A. & Markel, A., Oct 2018, In: Journal of Hypertension. 36, p. E81-E82 2 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  157. Non-agglomerated silicon-organic nanoparticles and their nanocomplexes with oligonucleotides: Synthesis and properties

    Levina, A. S., Repkova, M. N., Shikina, N. V., Ismagilov, Z. R., Yashnik, S. A., Semenov, D. V., Savinovskaya, Y. I., Mazurkova, N. A., Pyshnaya, I. A. & Zarytova, V. F., 21 Sept 2018, In: Beilstein Journal of Nanotechnology. 9, 1, p. 2516-2525 10 p.

    Research output: Contribution to journal › Article › peer-review

  158. Methods of the synthesis of silicon-containing nanoparticles intended for nucleic acid delivery

    Levina, A. S., Repkova, M. N., Ismagilov, Z. R. & Zarytova, V. F., 7 Sept 2018, In: Eurasian Chemico-Technological Journal. 20, 3, p. 177-194 18 p.

    Research output: Contribution to journal › Article › peer-review

  159. Residue coevolution reveals functionally important intramolecular interactions in formamidopyrimidine-DNA glycosylase

    Endutkin, A. V., Koptelov, S. S., Popov, A. V., Torgasheva, N. A., Lomzov, A. A., Tsygankova, A. R., Skiba, T. V., Afonnikov, D. A. & Zharkov, D. O., 1 Sept 2018, In: DNA Repair. 69, p. 24-33 10 p.

    Research output: Contribution to journal › Article › peer-review

  160. Characterization of biochemical properties of an apurinic/apyrimidinic endonuclease from Helicobacter pylori

    Turgimbayeva, A., Abeldenov, S., Zharkov, D. O., Ishchenko, A. A., Ramankulov, Y., Saparbaev, M. & Khassenov, B., 15 Aug 2018, In: PLoS ONE. 13, 8, p. e0202232 26 p., e0202232.

    Research output: Contribution to journal › Article › peer-review

  161. Characterization of primary normal and malignant breast cancer cell and their response to chemotherapy and immunostimulatory agents

    Nushtaeva, A. A., Stepanov, G. A., Semenov, D. V., Juravlev, E. S., Balahonova, E. A., Gerasimov, A. V., Sidorov, S. V., Savelyev, E. I., Kuligina, E. V., Richter, V. A. & Koval, O. A., 9 Jul 2018, In: BMC Cancer. 18, 1, p. 728 11 p., 728.

    Research output: Contribution to journal › Article › peer-review

  162. Not only the active site: importance of remote interactions in the recognition of oxidative DNA lesions

    Zharkov, D., Jul 2018, In: FEBS Open Bio. 8, p. 139-140 2 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  163. Variable termination sites of DNA polymerases encountering a DNA–protein cross-link

    Yudkina, A. V., Dvornikova, A. P. & Zharkov, D. O., 1 Jun 2018, In: PLoS ONE. 13, 6, p. e0198480 17 p., 0198480.

    Research output: Contribution to journal › Article › peer-review

  164. 2',3'-Dideoxyuridine triphosphate conjugated to SiO2 nanoparticles: Synthesis and evaluation of antiproliferative activity

    Vasilyeva, S. V., Grin, I. R., Chelobanov, B. P. & Stetsenko, D. A., 15 Apr 2018, In: Bioorganic and Medicinal Chemistry Letters. 28, 7, p. 1248-1251 4 p.

    Research output: Contribution to journal › Article › peer-review

  165. Antisense oligonucleotides for the arterial hypertension mechanisms study and therapy

    Klimov, L. O., Seryapina, A. A., Zarytova, V. F., Levina, A. S. & Markel, A. L., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 2, p. 240-247 8 p.

    Research output: Contribution to journal › Review article › peer-review

  166. Альтернативные доноры генетической информации при генной коррекции: олигонуклеотиды и РНК

    Торгашева, Н. А. & Жарков, Д. О., 2018, Редактирование генов и геномов. Новосибирск: ФГУП "Издательство СО РАН", Vol. 1. p. 295-316 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  167. Перспективы применения системы CRISPR/Cas9 в терапии

    Грин, И. Р. & Власов, В. В., 2018, Редактирование генов и геномов. Новосибирск: ФГУП "Издательство СО РАН", Vol. 2. p. 275-305 31 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  168. Редактирование эпигенетических меток ДНК

    Петрова, Д. В., Жарков, Д. О. & Грин, И. Р., 2018, Редактирование генов и геномов. Новосибирск: ФГУП "Издательство СО РАН", Vol. 1. p. 317-353 37 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  169. Структурные основы специфичности белка Cas9

    Вохтанцев, И. П., Ким, Д. В. & Жарков, Д. О., 2018, Редактирование генов и геномов. Новосибирск: ФГУП "Издательство СО РАН", Vol. 1. p. 177-198 22 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  170. Узнавание и процессинг двуцепочечных разрывов в клетках бактерий и эукариот

    Мечетин, Г. В. & Жарков, Д. О., 2018, Редактирование генов и геномов. Новосибирск: ФГУП "Издательство СО РАН", Vol. 1. p. 267-293 27 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  171. 2017

  172. Nuclear delivery of oligonucleotides via nanocomposites based on TiO2 nanoparticles and polylysine

    Chelobanov, B. P., Repkova, M. N., Baiborodin, S. I., Ryabchikova, E. I. & Stetsenko, D. A., 9 Nov 2017, In: Molekuliarnaia biologiia. 51, 5, p. 797-808 12 p.

    Research output: Contribution to journal › Article › peer-review

  173. Global DNA dynamics of 8-oxoguanine repair by human OGG1 revealed by stopped-flow kinetics and molecular dynamics simulation

    Lukina, M. V., Koval, V. V., Lomzov, A. A., Zharkov, D. O. & Fedorova, O. S., 1 Oct 2017, In: Molecular BioSystems. 13, 10, p. 1954-1966 13 p.

    Research output: Contribution to journal › Article › peer-review

  174. Nuclear delivery of oligonucleotides via nanocomposites based on TiO2 nanoparticles and polylysine

    Chelobanov, B. P., Repkova, M. N., Baiborodin, S. I., Ryabchikova, E. I. & Stetsenko, D. A., 1 Sept 2017, In: Molecular Biology. 51, 5, p. 695-704 10 p.

    Research output: Contribution to journal › Article › peer-review

  175. DNA repair in transcription intermediates by helix-two-turn-helix family DNA glycosylases

    Makasheva, K. & Zharkov, D., Sept 2017, In: FEBS Journal. 284, p. 114-114 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  176. Enzyme processivity as a drug target: The case of poxvirus uracil-DNA glycosylase

    Zharkov, D., Sept 2017, In: FEBS Journal. 284, p. 11-11 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  177. Dynamic recognition in protein-DNA complexes

    Simmerling, C., Grollman, A. & Zharkov, D., 20 Aug 2017, In: Abstracts of papers of the american chemical society. 254, 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  178. Influence of pyridine-like ligands on the structure, photochemical and biological properties of nitro-nitrosyl ruthenium complexes

    Kostin, G. A., Mikhailov, A. A., Kuratieva, N. V., Pischur, D. P., Zharkov, D. O. & Grin, I. R., 7 Aug 2017, In: New Journal of Chemistry. 41, 15, p. 7758-7765 8 p.

    Research output: Contribution to journal › Article › peer-review

  179. Impact of delivery method on antiviral activity of phosphodiester, phosphorothioate, and phosphoryl guanidine oligonucleotides in MDCK cells infected with H5N1 bird flu virus

    Levina, A. S., Repkova, M. N., Chelobanov, B. P., Bessudnova, E. V., Mazurkova, N. A., Stetsenko, D. A. & Zarytova, V. F., 1 Jul 2017, In: Molecular Biology. 51, 4, p. 633-638 6 p.

    Research output: Contribution to journal › Article › peer-review

  180. Impact of Delivery Method on Antiviral Activity of Phosphodiester, Phosphorothioate, and Phosphoryl Guanidine Oligonucleotides in MDCK Cells Infected with H5N1 Bird Flu Virus

    Levina, A. S., Repkova, M. N., Chelobanov, B. P., Bessudnova, E. V., Mazurkova, N. A., Stetsenko, D. A. & Zarytova, V. F., 1 Jul 2017, In: Molekuliarnaia biologiia. 51, 4, p. 717-723 7 p.

    Research output: Contribution to journal › Article › peer-review

  181. Aberrant base excision repair pathway of oxidatively damaged DNA: Implications for degenerative diseases

    Talhaoui, I., Matkarimov, B. T., Tchenio, T., Zharkov, D. O. & Saparbaev, M. K., 1 Jun 2017, In: Free Radical Biology and Medicine. 107, p. 266-277 12 p.

    Research output: Contribution to journal › Review article › peer-review

  182. Molecular dynamics simulation of the opposite-base preference and interactions in the active site of formamidopyrimidine-DNA glycosylase

    Popov, A. V., Endutkin, A. V., Vorobjev, Y. N. & Zharkov, D. O., 8 May 2017, In: BMC Structural Biology. 17, 1, p. 1-19 19 p., 5.

    Research output: Contribution to journal › Article › peer-review

  183. Recognition but no repair of abasic site in single-stranded DNA by human ribosomal uS3 protein residing within intact 40S subunit

    Grosheva, A. S., Zharkov, D. O., Stahl, J., Gopanenko, A. V., Tupikin, A. E., Kabilov, M. R., Graifer, D. M. & Karpova, G. G., 20 Apr 2017, In: Nucleic Acids Research. 45, 7, p. 3833-3843 11 p.

    Research output: Contribution to journal › Article › peer-review

  184. Toward gene therapy of hypertension: Experimental study on hypertensive ISIAH rats

    Repkova, M. N., Levina, A. S., Seryapina, A. A., Shikina, N. V., Bessudnova, E. V., Zarytova, V. F. & Markel, A. L., 1 Apr 2017, In: Biochemistry (Moscow). 82, 4, p. 454-457 4 p.

    Research output: Contribution to journal › Article › peer-review

  185. DNA Deformation-Coupled Recognition of 8-Oxoguanine: Conformational Kinetic Gating in Human DNA Glycosylase

    Li, H., Endutkin, A. V., Bergonzo, C., Fu, L., Grollman, A., Zharkov, D. O. & Simmerling, C., 22 Feb 2017, In: Journal of the American Chemical Society. 139, 7, p. 2682-2692 11 p.

    Research output: Contribution to journal › Article › peer-review

  186. Solid/gas biocatalysis

    Kulishova, L. M. & Zharkov, D. O., 1 Feb 2017, In: Biochemistry (Moscow). 82, 2, p. 95-105 11 p.

    Research output: Contribution to journal › Review article › peer-review

  187. Correlated target search by uracil-DNA glycosylase in the presence of bulky adducts and DNA-binding ligands

    Mechetin, G. V., Dyatlova, E. A., Sinyakov, A. N., Ryabinin, V. A., Vorobjev, P. E. & Zharkov, D. O., 1 Jan 2017, In: Russian Journal of Bioorganic Chemistry. 43, 1, p. 23-28 6 p.

    Research output: Contribution to journal › Article › peer-review

  188. Dihydroartemisinin counteracts fibrotic portal hypertension via farnesoid X receptor-dependent inhibition of hepatic stellate cell contraction

    Endutkin, A., Popov, A., Yudkina, A., Makasheva, K., Afonnikov, D., Simmerling, C. & Zharkov, D., 1 Jan 2017, In: FEBS Journal. 284, 1, p. 114-133 20 p.

    Research output: Contribution to journal › Article › peer-review

  189. Effects of brain reninangiotensin system inhibition in ISIAH rats with inherited stress-induced arterial hypertension

    Klimov, L. O., Ryazanova, M. A., Fedoseeva, L. A. & Markel, A. L., 2017, In: Вавиловский журнал генетики и селекции. 21, 6, p. 735-741 7 p.

    Research output: Contribution to journal › Article › peer-review

  190. 2013

  191. СПОСОБ ПОЛУЧЕНИЯ НАНОРАЗМЕРНОЙ СИСТЕМЫ ДОСТАВКИ ФРАГМЕНТОВ НУКЛЕИНОВЫХ КИСЛОТ И ИХ АНАЛОГОВ В КЛЕТКИ МЛЕКОПИТАЮЩИХ

    Зарытова, В. Ф., Левина, А. С., Репкова, М. Н., Исмагилов, З. Р. & Шикина, Н. В., 20 Nov 2013, IPC No. C12N15/00, B82B3/00, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2499045, Priority date 5 Mar 2012, Priority No. 2012108259

    Research output: Patent › Patent for invention

  192. НАНОКОМПОЗИТ С АКТИВНЫМ ЛИГАНДОМ, СПОСОБ ЕГО ПРИГОТОВЛЕНИЯ И СПОСОБ АДРЕСНОЙ ИНАКТИВАЦИИ ВИРУСА ГРИППА ВНУТРИ КЛЕТКИ

    Исмагилов, З. Р., Левина, А. С., Репкова, М. Н., Шикина, Н. В., Зарытова, В. Ф., Загребельный, С. Н. & Мазуркова, Н. А., 27 Oct 2013, IPC No. C12N15/11, B82B3/00, C12N7/04, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2496878, Priority date 4 May 2012, Priority No. 2012118712

    Research output: Patent › Patent for invention

  193. 2012

  194. НАНОКОМПОЗИТЫ ДИОКСИДА ТИТАНА ДЛЯ ИНАКТИВАЦИИ ВИРУСНОГО ГЕНОМА ВНУТРИ КЛЕТОК, СПОСОБ ИХ ПОЛУЧЕНИЯ

    Исмагилов, З. Р., Шикина, Н. В., Гаврилова, А. А., Пармон, В. Н., Зарытова, В. Ф., Левина, А. С., Репкова, М. Н., Беланов, Е. Ф., Зиновьев, В. В., Малыгин, Э. Г., Загребельный, С. Н., Нетёсов, С. В., Байбородин, С. И. & Евдокимов, А. А., 10 Mar 2012, IPC No. C12N15/11, B82B3/00, A61K48/00, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2444571, Priority date 28 May 2008, Priority No. 2008121609

    Research output: Patent › Patent for invention

ID: 3086315