1. 2018
  2. BRCA-analyzer: Automatic workflow for processing NGS reads of BRCA1 and BRCA2 genes

    Kechin, A., Khrapov, E., Boyarskikh, U., Kel, A. & Filipenko, M., 1 Dec 2018, In: Computational Biology and Chemistry. 77, p. 297-306 10 p.

    Research output: Contribution to journalArticlepeer-review

  3. Changes in cell differentiation and proliferation lead to production of abzymes in EAE mice treated with DNA–Histone complexes

    Aulova, K. S., Toporkova, L. B., Lopatnikova, J. A., Alshevskaya, A. A., Sedykh, S. E., Buneva, V. N., Budde, T., Meuth, S. G., Popova, N. A., Orlovskaya, I. A. & Nevinsky, G. A., 1 Dec 2018, In: Journal of Cellular and Molecular Medicine. 22, 12, p. 5816-5832 17 p.

    Research output: Contribution to journalArticlepeer-review

  4. Cryptic divergences in the genus Pisum L. (peas), as revealed by phylogenetic analysis of plastid genomes

    Bogdanova, V. S., Mglinets, A. V., Shatskaya, N. V., Kosterin, O. E., Solovyev, V. I. & Vasiliev, G. V., 1 Dec 2018, In: Molecular Phylogenetics and Evolution. 129, p. 280-290 11 p.

    Research output: Contribution to journalArticlepeer-review

  5. Extremely stable high molecular mass soluble multiprotein complex from eggs of sea urchin Strongylocentrotus intermedius with phosphatase activity

    Soboleva, S. E., Burkova, E. E., Dmitrenok, P. S., Bulgakov, D. V., Menzorova, N. I., Buneva, V. N. & Nevinsky, G. A., 1 Dec 2018, In: Journal of Molecular Recognition. 31, 12, 12 p., e2753.

    Research output: Contribution to journalArticlepeer-review

  6. New slbo-Gal4 driver lines for the analysis of border cell migration during Drosophila oogenesis

    Ogienko, A. A., Yarinich, L. A., Fedorova, E. V., Lebedev, M. O., Andreyeva, E. N., Pindyurin, A. V. & Baricheva, E. M., 1 Dec 2018, In: Chromosoma. 127, 4, p. 475-487 13 p.

    Research output: Contribution to journalArticlepeer-review

  7. Replication protein A as a modulator of the poly(ADP-ribose)polymerase 1 activity

    Maltseva, E. A., Krasikova, Y. S., Sukhanova, M. V., Rechkunova, N. I. & Lavrik, O. I., 1 Dec 2018, In: DNA Repair. 72, p. 28-38 11 p.

    Research output: Contribution to journalArticlepeer-review

  8. Substrate specificity of human apurinic/apyrimidinic endonuclease APE1 in the nucleotide incision repair pathway

    Kuznetsova, A. A., Matveeva, A. G., Milov, A. D., Vorobjev, Y. N., Dzuba, S. A., Fedorova, O. S. & Kuznetsov, N. A., 30 Nov 2018, In: Nucleic Acids Research. 46, 21, p. 11454-11465 12 p.

    Research output: Contribution to journalArticlepeer-review

  9. Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation

    Gruber, D. R., Toner, J. J., Miears, H. L., Shernyukov, A. V., Kiryutin, A. S., Lomzov, A. A., Endutkin, A. V., Grin, I. R., Petrova, D. V., Kupryushkin, M. S., Yurkovskaya, A. V., Johnson, E. C., Okon, M., Bagryanskaya, E. G., Zharkov, D. O. & Smirnov, S. L., 16 Nov 2018, In: Nucleic Acids Research. 46, 20, p. 10827-10839 13 p.

    Research output: Contribution to journalArticlepeer-review

  10. High-frequency pulsed electron-electron double resonance spectroscopy on DNA duplexes using trityl tags and shaped microwave pulses

    Kuzhelev, A., Akhmetzyanov, D., Denysenkov, V., Shevelev, G., Krumkacheva, O., Bagryanskaya, E. & Prisner, T., 7 Nov 2018, In: Physical Chemistry Chemical Physics. 20, 41, p. 26140-26144 5 p.

    Research output: Contribution to journalArticlepeer-review

  11. Nucleotide modifications decrease innate immune response induced by synthetic analogs of snRNAs and snoRNAs

    Stepanov, G., Zhuravlev, E., Shender, V., Nushtaeva, A., Balakhonova, E., Mozhaeva, E., Kasakin, M., Koval, V., Lomzov, A., Pavlyukov, M., Malyants, I., Zhorov, M., Kabilova, T., Chernolovskaya, E., Govorun, V., Kuligina, E., Semenov, D. & Richter, V., 2 Nov 2018, In: Genes. 9, 11, 18 p., 531.

    Research output: Contribution to journalArticlepeer-review

  12. A mosaic intragenic microduplication of LAMA1 and a constitutional 18p11.32 microduplication in a patient with keratosis pilaris and intellectual disability

    Kashevarova, A. A., Nazarenko, L. P., Skryabin, N. A., Nikitina, T. V., Vasilyev, S. A., Tolmacheva, E. N., Lopatkina, M. E., Salyukova, O. A., Chechetkina, N. N., Vorotelyak, E. A., Kalabusheva, E. P., Fishman, V. S., Kzhyshkowska, J., Graziano, C., Magini, P., Romeo, G. & Lebedev, I. N., 1 Nov 2018, In: American Journal of Medical Genetics, Part A. 176, 11, p. 2395-2403 9 p.

    Research output: Contribution to journalArticlepeer-review

  13. Excision of Carbohydrate-Modified dNMP Analogues from DNA 3' end by Human Apurinic/Apyrimidinic Endonuclease 1 (APE1) and Tyrosyl-DNA Phosphodiesterase 1 (TDP1)

    Dyrkheeva, N. S., Lebedeva, N. A., Sherstyuk, Y. V., Abramova, T. V., Silnikov, V. N. & Lavrik, O. I., 1 Nov 2018, In: Molekuliarnaia biologiia. 52, 6, p. 1066-1073 8 p.

    Research output: Contribution to journalArticlepeer-review

  14. Excision of Carbohydrate-Modified dNMP Analogues from DNA 3' end by Human Apurinic/Apyrimidinic Endonuclease 1 (APE1) and Tyrosyl-DNA Phosphodiesterase 1 (TDP1)

    Dyrkheeva, N. S., Lebedeva, N. A., Sherstyuk, Y. V., Abramova, T. V., Silnikov, V. N. & Lavrik, O. I., 1 Nov 2018, In: Molecular Biology. 52, 6, p. 922-928 7 p.

    Research output: Contribution to journalArticlepeer-review

  15. Modified Oligonucleotides for Guiding RNA Cleavage Using Bacterial RNase P

    Novopashina, D. S., Nazarov, A. S., Vorobjeva, M. A., Kuprushkin, M. S., Davydova, A. S., Lomzov, A. A., Pyshnyi, D. V., Altman, S. & Venyaminova, A. G., 1 Nov 2018, In: Molecular Biology. 52, 6, p. 905-912 8 p.

    Research output: Contribution to journalArticlepeer-review

  16. Modified Oligonucleotides for Guiding RNA Cleavage Using Bacterial RNase P

    Novopashina, D. S., Nazarov, A. S., Vorobjeva, M. A., Kuprushkin, M. S., Davydova, A. S., Lomzov, A. A., Pyshnyi, D. V., Altman, S. & Venyaminova, A. G., 1 Nov 2018, In: Molekuliarnaia biologiia. 52, 6, p. 1045-1054 10 p.

    Research output: Contribution to journalArticlepeer-review

  17. Establishment of Constraints on Amyloid Formation Imposed by Steric Exclusion of Globular Domains

    Azizyan, R. A., Garro, A., Radkova, Z., Anikeenko, A., Bakulina, A., Dumas, C. & Kajava, A. V., 12 Oct 2018, In: Journal of Molecular Biology. 430, 20, p. 3835-3846 12 p.

    Research output: Contribution to journalArticlepeer-review

  18. Multiple intrasyntenic rearrangements and rapid speciation in voles

    Romanenko, S. A., Serdyukova, N. A., Perelman, P. L., Trifonov, V. A., Golenishchev, F. N., Bulatova, N. S., Stanyon, R. & Graphodatsky, A. S., 8 Oct 2018, In: Scientific Reports. 8, 1, p. 14980 9 p., 14980.

    Research output: Contribution to journalArticlepeer-review

  19. Conventional anti-glioblastoma chemotherapy affects proteoglycan composition of brain extracellular matrix in rat experimental model in vivo

    Tsidulko, A. Y., Bezier, C., De La Bourdonnaye, G., Suhovskih, A. V., Pankova, T. M., Kazanskaya, G. M., Aidagulova, S. V. & Grigorieva, E. V., 2 Oct 2018, In: Frontiers in Pharmacology. 9, OCT, p. 1104 13 p., 1104.

    Research output: Contribution to journalArticlepeer-review

  20. Data on PAGE analysis and MD simulation for the interaction of endonuclease Apn1 from Saccharomyces cerevisiae with DNA substrates containing 5,6-dihydrouracyl and 2-aminopurine

    Dyakonova, E. S., Koval, V. V., Lomzov, A. A., Ishchenko, A. A. & Fedorova, O. S., 1 Oct 2018, In: Data in Brief. 20, p. 1515-1524 10 p.

    Research output: Contribution to journalArticlepeer-review

  21. Humoral immunity to influenza in an at-risk population and severe influenza cases in Russia in 2016–2017

    Ilyicheva, T. N., Durymanov, A. G., Svyatchenko, S. V., Marchenko, V. Y., Sobolev, I. A., Bakulina, A. Y., Goncharova, N. I., Kolosova, N. P., Susloparov, I. M., Pyankova, O. G., Ryzhikov, A. B. & Maksyutov, R. A., 1 Oct 2018, In: Archives of Virology. 163, 10, p. 2675-2685 11 p.

    Research output: Contribution to journalArticlepeer-review

  22. The rRNA Gene Containing Marker Chromosome Associated with a Intellectual Disability: A Clinical Case Report

    Telepova, A. S., Romanenko, S. A., Lemskaya, N. A., Maksimova, Y. V., Shorina, A. R. & Yudkin, D. V., 1 Oct 2018, In: Molecular Genetics, Microbiology and Virology. 33, 4, p. 241-244 4 p.

    Research output: Contribution to journalArticlepeer-review

  23. A novel class of tyrosyl-DNA phosphodiesterase 1 inhibitors that contains the octahydro-2H-chromen-4-ol scaffold

    Li-Zhulanov, N. S., Zakharenko, A. L., Chepanova, A. A., Patel, J., Zafar, A., Volcho, K. P., Salakhutdinov, N. F., Reynisson, J., Leung, I. K. H. & Lavrik, O. I., 26 Sept 2018, In: Molecules. 23, 10, 14 p., 2468.

    Research output: Contribution to journalArticlepeer-review

  24. B chromosomes of the asian seabass (Lates calcarifer) contribute to genome variations at the level of individuals and populations

    Komissarov, A., Vij, S., Yurchenko, A., Trifonov, V., Thevasagayam, N., Saju, J., Sridatta, P. S. R., Purushothaman, K., Graphodatsky, A., Orbán, L. & Kuznetsova, I., 20 Sept 2018, In: Genes. 9, 10, p. 1.-15 15 p., 464.

    Research output: Contribution to journalArticlepeer-review

  25. OpenWorm: Overview and recent advances in integrative biological simulation of Caenorhabditis elegans

    Sarma, G. P., Lee, C. W., Portegys, T., Ghayoomie, V., Jacobs, T., Alicea, B., Cantarelli, M., Currie, M., Gerkin, R. C., Gingell, S., Gleeson, P., Gordon, R., Hasani, R. M., Idili, G., Khayrulin, S., Lung, D., Palyanov, A., Watts, M. & Larson, S. D., 10 Sept 2018, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 373, 1758, 10 p., 20170382.

    Research output: Contribution to journalArticlepeer-review

  26. Three-dimensional simulation of the Caenorhabditis elegans body and muscle cells in liquid and gel environments for behavioural analysis

    Palyanov, A., Khayrulin, S. & Larson, S. D., 10 Sept 2018, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 373, 1758, 10 p., 20170376.

    Research output: Contribution to journalArticlepeer-review

  27. Novel group of tyrosyl-DNA-phosphodiesterase 1 inhibitors based on disaccharide nucleosides as drug prototypes for anti-cancer therapy

    Komarova, A. O., Drenichev, M. S., Dyrkheeva, N. S., Kulikova, I. V., Oslovsky, V. E., Zakharova, O. D., Zakharenko, A. L., Mikhailov, S. N. & Lavrik, O. I., 7 Sept 2018, In: Journal of Enzyme Inhibition and Medicinal Chemistry. 33, 1, p. 1415-1429 15 p.

    Research output: Contribution to journalArticlepeer-review

  28. Apurinic/apyrimidinic endonuclease Apn1 from Saccharomyces cerevisiae is recruited to the nucleotide incision repair pathway: Kinetic and structural features

    Dyakonova, E. S., Koval, V. V., Lomzov, A. A., Ishchenko, A. A. & Fedorova, O. S., 1 Sept 2018, In: Biochimie. 152, p. 53-62 10 p.

    Research output: Contribution to journalArticlepeer-review

  29. Low-pass single-chromosome sequencing of human small supernumerary marker chromosomes (sSMCs) and Apodemus B chromosomes

    Makunin, A. I., Rajičić, M., Karamysheva, T. V., Romanenko, S. A., Druzhkova, A. S., Blagojević, J., Vujošević, M., Rubtsov, N. B., Graphodatsky, A. S. & Trifonov, V. A., 1 Sept 2018, In: Chromosoma. 127, 3, p. 301-311 11 p.

    Research output: Contribution to journalArticlepeer-review

  30. Kinetic features of 30-50 exonuclease activity of human AP-endonuclease ape1

    Kuznetsova, A. A., Fedorova, O. S. & Kuznetsov, N. A., 21 Aug 2018, In: Molecules. 23, 9, 14 p., 2101.

    Research output: Contribution to journalArticlepeer-review

  31. Evolutionary sex chromosome translocations in amniotes

    Trifonov, V. A., Lisachov, A. P., Kichigin, I. G., Makunin, A. I., Pereira, J. C., Druzhkova, A. S., Ferguson-Smith, M. A. & Giovannotti, M., 16 Aug 2018, In: Comparative Cytogenetics. 12, 3, p. 304-305 2 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  32. Analysis of new charge-neutral DNA/RNA analogues phosphoryl guanidine oligonucleotides (PGO) by gel electrophoresis

    Fokina, A., Wang, M., Ilyina, A., Klabenkova, K., Burakova, E., Chelobanov, B. & Stetsenko, D., 15 Aug 2018, In: Analytical Biochemistry. 555, p. 9-11 3 p.

    Research output: Contribution to journalArticlepeer-review

  33. Synthesis and evaluation of aryliden- and hetarylidenfuranone derivatives of usnic acid as highly potent Tdp1 inhibitors

    Zakharova, O., Luzina, O., Zakharenko, A., Sokolov, D., Filimonov, A., Dyrkheeva, N., Chepanova, A., Ilina, E., Ilyina, A., Klabenkova, K., Chelobanov, B., Stetsenko, D., Zafar, A., Eurtivong, C., Reynisson, J., Volcho, K., Salakhutdinov, N. & Lavrik, O., 15 Aug 2018, In: Bioorganic and Medicinal Chemistry. 26, 15, p. 4470-4480 11 p.

    Research output: Contribution to journalArticlepeer-review

  34. Sequencing of supernumerary chromosomes of red fox and raccoon dog confirms a non-random gene acquisition by B chromosomes

    Makunin, A. I., Romanenko, S. A., Beklemisheva, V. R., Perelman, P. L., Druzhkova, A. S., Petrova, K. O., Prokopov, D. Y., Chernyaeva, E. N., Johnson, J. L., Kukekova, A. V., Yang, F., Ferguson-Smith, M. A., Graphodatsky, A. S. & Trifonov, V. A., 10 Aug 2018, In: Genes. 9, 8, 14 p., 405.

    Research output: Contribution to journalArticlepeer-review

  35. Updated carrier rates for c.35delG (GJB2) associated with hearing loss in Russia and common c.35delG haplotypes in Siberia

    Zytsar, M. V., Barashkov, N. A., Bady-Khoo, M. S., Shubina-Olejnik, O. A., Danilenko, N. G., Bondar, A. A., Morozov, I. V., Solovyev, A. V., Danilchenko, V. Y., Maximov, V. N. & Posukh, O. L., 7 Aug 2018, In: BMC Medical Genetics. 19, 1, p. 138 9 p., 138.

    Research output: Contribution to journalArticlepeer-review

  36. Allele-Specific Biased Expression of the CNTN6 Gene in iPS Cell-Derived Neurons from a Patient with Intellectual Disability and 3p26.3 Microduplication Involving the CNTN6 Gene

    Gridina, M. M., Matveeva, N. M., Fishman, V. S., Menzorov, A. G., Kizilova, H. A., Beregovoy, N. A., Kovrigin, I. I., Pristyazhnyuk, I. E., Oscorbin, I. P., Filipenko, M. L., Kashevarova, A. A., Skryabin, N. A., Nikitina, T. V., Sazhenova, E. A., Nazarenko, L. P., Lebedev, I. N. & Serov, O. L., 1 Aug 2018, In: Molecular Neurobiology. 55, 8, p. 6533-6546 14 p.

    Research output: Contribution to journalArticlepeer-review

  37. Isolation and characterization of a group of new Proteus bacteriophages

    Morozova, V., Kozlova, Y., Shedko, E., Babkin, I., Kurilshikov, A., Bokovaya, O., Bardashova, A., Yunusova, A., Tikunov, A., Tupikin, A., Ushakova, T., Ryabchikova, E. & Tikunova, N., 1 Aug 2018, In: Archives of Virology. 163, 8, p. 2189-2197 9 p.

    Research output: Contribution to journalArticlepeer-review

  38. Isolation, culturing and gene expression profiling of inner mass cells from stable and vulnerable carotid atherosclerotic plaques

    Novikova, O. A., Nazarkina, Z. K., Cherepanova, A. V., Laktionov, P. P., Chelobanov, B. P., Murashov, I. S., Deev, R. V., Pokushalov, E. A., Karpenko, A. A. & Laktionov, P. P., 1 Aug 2018, In: PLoS ONE. 14, 6, p. e0218892 19 p., e0218892.

    Research output: Contribution to journalArticlepeer-review

  39. Taxonomy of the order Mononegavirales: update 2018

    Amarasinghe, G. K., Aréchiga Ceballos, N. G., Banyard, A. C., Basler, C. F., Bavari, S., Bennett, A. J., Blasdell, K. R., Briese, T., Bukreyev, A., Caì, Y., Calisher, C. H., Campos Lawson, C., Chandran, K., Chapman, C. A., Chiu, C. Y., Choi, K. S., Collins, P. L., Dietzgen, R. G., Dolja, V. V., Dolnik, O., & 30 othersDomier, L. L., Dürrwald, R., Dye, J. M., Easton, A. J., Ebihara, H., Echevarría, J. E., Fooks, A. R., Formenty, P. B. H., Fouchier, R. A. M., Freuling, C. M., Ghedin, E., Goldberg, T. L., Hewson, R., Horie, M., Hyndman, T. H., Jiāng, D., Kityo, R., Kobinger, G. P., Kondō, H., Koonin, E. V., Krupovic, M., Kurath, G., Lamb, R. A., Lee, B., Leroy, E. M., Maes, P., Maisner, A., Marston, D. A., Mor, S. K. & Netesov, S. V., 1 Aug 2018, In: Archives of Virology. 163, 8, p. 2283-2294 12 p.

    Research output: Contribution to journalArticlepeer-review

  40. Effect of the relief on the measurement of bond rupture force with the help of AFM: The dynamics of interaction and optimization of the procedure

    Kurus, N. N., Dultsev, F. N., Shevelev, G., Lomzov, A. A. & Pyshnyi, D. V., 28 Jul 2018, In: Analytical Methods. 10, 28, p. 3498-3505 8 p.

    Research output: Contribution to journalArticlepeer-review

  41. Characterization of primary normal and malignant breast cancer cell and their response to chemotherapy and immunostimulatory agents

    Nushtaeva, A. A., Stepanov, G. A., Semenov, D. V., Juravlev, E. S., Balahonova, E. A., Gerasimov, A. V., Sidorov, S. V., Savelyev, E. I., Kuligina, E. V., Richter, V. A. & Koval, O. A., 9 Jul 2018, In: BMC Cancer. 18, 1, p. 728 11 p., 728.

    Research output: Contribution to journalArticlepeer-review

  42. B cell-specific protein FCRLA is expressed by plasmacytoid dendritic cells in humans

    Reshetnikova, E., Guselnikov, S., Volkova, O., Baranov, K., Taranin, A. & Mechetina, L., 1 Jul 2018, In: Cytometry Part B - Clinical Cytometry. 94, 4, p. 683-687 5 p.

    Research output: Contribution to journalArticlepeer-review

  43. p-Toluenesulfonic acid mediated one-pot cascade synthesis and cytotoxicity evaluation of polyfluorinated 2-aryl-2,3-dihydroquinolin-4-ones and their derivatives

    Politanskaya, L., Rybalova, T., Zakharova, O., Nevinsky, G. & Tretyakov, E., 1 Jul 2018, In: Journal of Fluorine Chemistry. 211, p. 129-140 12 p.

    Research output: Contribution to journalArticlepeer-review

  44. Synthesis and Inhibitory Properties of Imines Containing Monoterpenoid and Adamantane Fragments Against DNA Repair Enzyme Tyrosyl-DNA Phosphodiesterase 1 (Tdp1)

    Zakharenko, A. L., Mozhaitsev, E. S., Suslov, E. V., Korchagina, D. V., Volcho, K. P., Salakhutdinov, N. F. & Lavrik, O. I., 1 Jul 2018, In: Chemistry of Natural Compounds. 54, 4, p. 672-676 5 p.

    Research output: Contribution to journalArticlepeer-review

  45. The Role of Exosomal Tetraspanins and Proteases in Tumor Progression

    Yunusova, N. V., Tugutova, E. A., Tamkovich, S. N. & Kondakova, I. V., 1 Jul 2018, In: Biochemistry (Moscow) Supplement Series B: Biomedical Chemistry. 12, 3, p. 191-202 12 p.

    Research output: Contribution to journalArticlepeer-review

  46. Unusual interaction of human apurinic/apyrimidinic endonuclease 1 (APE1) with abasic sites via the Schiff-base-dependent mechanism

    Ilina, E. S., Khodyreva, S. N. & Lavrik, O. I., 1 Jul 2018, In: Biochimie. 150, p. 88-99 12 p.

    Research output: Contribution to journalArticlepeer-review

  47. Effect of pH on DNA binding and catalysis of human apurinic/apyrimidinic endonuclease 1

    Alekseeva, I., Bakman, A., Vorobjev, Y., Fedorova, O. & Kuznetsov, N., Jul 2018, In: FEBS Open Bio. 8, p. 405-405 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  48. Evolution of inhibitor-resistant variants of HIV protease analyzed by pre-steady state kinetic analysis

    Zakharova, M., Kuznetsova, A., Kaliberda, E., Dronina, M., Kolesnikov, A., Kozyr, A., Smirnov, I., Rumsh, L., Fedorova, O., Knorre, D., Gabibov, A. & Kuznetsov, N., Jul 2018, In: FEBS Open Bio. 8, p. 290-291 2 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  49. Induction of the immunogenic type of cell death by recombinant lactaptin analogues

    Troitskaya, O., Tkachenko, A., Kochneva, G., Richter, V. & Koval, O., Jul 2018, In: FEBS Open Bio. 8, p. 296-296 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  50. Interaction of PARP1 and its regulatory protein, YB-1, is modulated by PAR

    Naumenko, K., Alemasova, E. & Lavrik, O., Jul 2018, In: FEBS Open Bio. 8, p. 139-139 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

ID: 3083609