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  1. Article › Research › Peer-reviewed

  2. 2',3'-Dideoxyuridine triphosphate conjugated to SiO2 nanoparticles: Synthesis and evaluation of antiproliferative activity

    Vasilyeva, S. V., Grin, I. R., Chelobanov, B. P. & Stetsenko, D. A., 15 Apr 2018, In: Bioorganic and Medicinal Chemistry Letters. 28, 7, p. 1248-1251 4 p.

    Research output: Contribution to journal › Article › peer-review

  3. Abasic site-peptide cross-links are blocking lesions repaired by AP endonucleases

    Yudkina, A. V., Bulgakov, N. A., Kim, D. V., Baranova, S. V., Ishchenko, A. A., Saparbaev, M. K., Koval, V. V. & Zharkov, D. O., 7 Jul 2023, In: Nucleic Acids Research. 51, 12, p. 6321-6336 16 p., gkad423.

    Research output: Contribution to journal › Article › peer-review

  4. Aberrant repair initiated by the adenine-DNA glycosylase does not play a role in UV-induced mutagenesis in Escherichia coli

    Zutterling, C., Mursalimov, A., Talhaoui, I., Koshenov, Z., Akishev, Z., Bissenbaev, A. K., Mazon, G., Geacintov, N. E., Gasparutto, D., Groisman, R., Zharkov, D. O., Matkarimov, B. T. & Saparbaev, M., 5 Dec 2018, In: PeerJ. 6, 12, 23 p., 6029.

    Research output: Contribution to journal › Article › peer-review

  5. Activity of nsp14 Exonuclease from SARS-CoV-2 towards RNAs with Modified 3'-Termini

    Yuyukina, S. K., Barmatov, A. E., Bizyaev, S. N., Stetsenko, D. A., Sergeeva, O. V., Zatsepin, T. S. & Zharkov, D. O., Apr 2023, In: Doklady. Biochemistry and biophysics. 509, 1, p. 65-69 5 p.

    Research output: Contribution to journal › Article › peer-review

  6. A Low-Activity Polymorphic Variant of Human NEIL2 DNA Glycosylase

    Kakhkharova, Z. I., Zharkov, D. O. & Grin, I. R., 1 Feb 2022, In: International Journal of Molecular Sciences. 23, 4, 2212.

    Research output: Contribution to journal › Article › peer-review

  7. Alternative Mechanisms of Mutagenesis at mCpG Sites during Replication and Repair

    Shilkin, E. S., Petrova, D. V., Zharkov, D. O. & Makarova, A. V., Aug 2023, In: Molecular Biology. 57, 4, p. 584-592 9 p.

    Research output: Contribution to journal › Article › peer-review

  8. A New Class of Uracil-DNA Glycosylase Inhibitors Active against Human and Vaccinia Virus Enzyme

    Grin, I. R., Mechetin, G., Kasymov, R. D., Diatlova, E. A., Yudkina, A., Shchelkunov, S. N., Gileva, I. P., Denisova, A. A., Stepanov, G. A., Chilov, G. G. & Zharkov, D. O., 1 Nov 2021, In: Molecules. 26, 21, 15 p., 6668.

    Research output: Contribution to journal › Article › peer-review

  9. A non-canonical nucleotide from viral genomes interferes with the oxidative DNA damage repair system

    Yudkina, A. V., Endutkin, A. V., Diatlova, E. A. & Zharkov, D. O., Jan 2024, In: DNA Repair. 133, 8 p., 103605.

    Research output: Contribution to journal › Article › peer-review

  10. Antisense Oligonucleotides Immobilized on Silicon-Organic Nanoparticles as a Tool for Prolonged Correction of Hypertensive States

    Levina, A. S., Repkova, M. N., Klimov, L. O., Ryazanova, M. A., Markel, A. L. & Zarytova, V. F., 15 May 2019, In: Bulletin of Experimental Biology and Medicine. 167, 1, p. 116-119 4 p.

    Research output: Contribution to journal › Article › peer-review

  11. Antitumour activity of the ribonuclease binase from bacillus pumilus in the RLS40 tumour model is associated with the reorganisation of the miRNA network and reversion of cancer‐related cascades to normal functioning

    Mohamed, I. S. E., Sen’kova, A. V., Nadyrova, A. I., Savin, I. A., Markov, A. V., Mitkevich, V. A., Makarov, A. A., Ilinskaya, O. N., Mironova, N. L. & Zenkova, M. A., Nov 2020, In: Biomolecules. 10, 11, p. 1-20 20 p., 1509.

    Research output: Contribution to journal › Article › peer-review

  12. Are small nucleolar RNAs "cRISPRable"? A report on box C/D small nucleolar RNA editing in human cells

    Filippova, J. A., Matveeva, A. M., Zhuravlev, E. S., Balakhonova, E. A., Prokhorova, D. V., Malanin, S. J., Mahmud, R. S., Grigoryeva, T. V., Anufrieva, K. S., Semenov, D. V., Vlassov, V. V. & Stepanov, G. A., 4 Nov 2019, In: Frontiers in Pharmacology. 10, 16 p., 01246.

    Research output: Contribution to journal › Article › peer-review

  13. Azo dyes containing 1,3,4-thiadiazole fragment: Synthesis and properties

    Selivanova, G., Skolyapova, A., Wang, J., Karpova, E., Shundrina, I., Bagryanskaya, I. & Amosov, E., 28 Jan 2022, In: New Journal of Chemistry. 46, 4, p. 1929-1942 14 p.

    Research output: Contribution to journal › Article › peer-review

  14. Bacillus pumilus Ribonuclease Inhibits Migration of Human Duodenum Adenocarcinoma HuTu 80 Cells

    Zelenikhin, P., Mohamed, I. S. E., Nadyrova, A., Sirotkina, A. A., Ulyanova, V. V., Mironova, N. L., Mitkevieh, V. A., Makarov, A. A., Zenkova, M. A. & Ilinskaya, O. N., Jan 2020, In: Molecular Biology. 54, 1, p. 128-133 6 p.

    Research output: Contribution to journal › Article › peer-review

  15. Back-Up Base Excision DNA Repair in Human Cells Deficient in the Major AP Endonuclease, APE1

    Kim, D. V., Diatlova, E. A., Zharkov, T. D., Melentyev, V. S., Yudkina, A. V., Endutkin, A. V. & Zharkov, D. O., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 64.

    Research output: Contribution to journal › Article › peer-review

  16. Bypass of Abasic Site-Peptide Cross-Links by Human Repair and Translesion DNA Polymerases

    Yudkina, A. V., Barmatov, A. E., Bulgakov, N. A., Boldinova, E. O., Shilkin, E. S., Makarova, A. V. & Zharkov, D. O., 29 Jun 2023, In: International Journal of Molecular Sciences. 24, 13, 10877.

    Research output: Contribution to journal › Article › peer-review

  17. Cas9 is mostly orthogonal to human systems of DNA break sensing and repair

    Maltseva, E. A., Vasil'eva, I. A., Moor, N. A., Kim, D. V., Dyrkheeva, N. S., Kutuzov, M. M., Vokhtantsev, I. P., Kulishova, L. M., Zharkov, D. O. & Lavrik, O. I., 29 Nov 2023, In: PLoS ONE. 18, 11, 26 p., e0294683.

    Research output: Contribution to journal › Article › peer-review

  18. Catalytically Competent Conformation of the Active Site of Human 8-Oxoguanine-DNA Glycosylase

    Popov, A. V., Yudkina, A. V., Vorobjev, Y. N. & Zharkov, D. O., 17 Feb 2020, In: Biochemistry (Moscow). 85, 2, p. 192-204 13 p.

    Research output: Contribution to journal › Article › peer-review

  19. Characterization of biochemical properties of an apurinic/apyrimidinic endonuclease from Helicobacter pylori

    Turgimbayeva, A., Abeldenov, S., Zharkov, D. O., Ishchenko, A. A., Ramankulov, Y., Saparbaev, M. & Khassenov, B., 15 Aug 2018, In: PLoS ONE. 13, 8, p. e0202232 26 p., e0202232.

    Research output: Contribution to journal › Article › peer-review

  20. Characterization of primary normal and malignant breast cancer cell and their response to chemotherapy and immunostimulatory agents

    Nushtaeva, A. A., Stepanov, G. A., Semenov, D. V., Juravlev, E. S., Balahonova, E. A., Gerasimov, A. V., Sidorov, S. V., Savelyev, E. I., Kuligina, E. V., Richter, V. A. & Koval, O. A., 9 Jul 2018, In: BMC Cancer. 18, 1, p. 728 11 p., 728.

    Research output: Contribution to journal › Article › peer-review

  21. Characterization of Recombinant Endonuclease IV from Mycobacterium tuberculosis

    Dymova, M. A., Endutkin, A. V., Polunovsky, V. V., Zakabunin, A. I., Khrapov, E. A., Torgasheva, N. A., Yudkina, A. V., Mechetin, G. V., Filipenko, M. L. & Zharkov, D. O., Mar 2021, In: Molecular Biology. 55, 2, p. 225-233 9 p.

    Research output: Contribution to journal › Article › peer-review

  22. Cloning and characterization of the major AP endonuclease from Staphylococcus aureus

    Turgimbayeva, A., Zein, U., Zharkov, D. O., Ramankulov, Y., Saparbaev, M. & Abeldenov, S., Nov 2022, In: DNA Repair. 119, 10 p., 103390.

    Research output: Contribution to journal › Article › peer-review

  23. Conformational Dynamics of Damage Processing by Human DNA Glycosylase NEIL1

    Kladova, O. A., Grin, I. R., Fedorova, O. S., Kuznetsov, N. A. & Zharkov, D. O., 15 Mar 2019, In: Journal of Molecular Biology. 431, 6, p. 1098-1112 15 p.

    Research output: Contribution to journal › Article › peer-review

  24. Correlated target search by uracil-DNA glycosylase in the presence of bulky adducts and DNA-binding ligands

    Mechetin, G. V., Dyatlova, E. A., Sinyakov, A. N., Ryabinin, V. A., Vorobjev, P. E. & Zharkov, D. O., 1 Jan 2017, In: Russian Journal of Bioorganic Chemistry. 43, 1, p. 23-28 6 p.

    Research output: Contribution to journal › Article › peer-review

  25. Correlated Target Search by Vaccinia Virus Uracil-DNA Glycosylase, a DNA Repair Enzyme and a Processivity Factor of Viral Replication Machinery

    Diatlova, E. A., Mechetin, G. V., Yudkina, A. V., Zharkov, V. D., Torgasheva, N. A., Endutkin, A. V., Shulenina, O. V., Konevega, A. L., Gileva, I. P., Shchelkunov, S. N. & Zharkov, D. O., 23 May 2023, In: International Journal of Molecular Sciences. 24, 11, 9113.

    Research output: Contribution to journal › Article › peer-review

  26. Critical Sites of DNA Backbone Integrity for Damaged Base Removal by Formamidopyrimidine-DNA Glycosylase

    Endutkin, A. V. & Zharkov, D. O., 18 Jun 2019, In: Biochemistry. 58, 24, p. 2740-2749 10 p.

    Research output: Contribution to journal › Article › peer-review

  27. Dataset for dynamics and conformational changes in human NEIL2 protein analyzed by integrative structural biology approach

    Zhdanova, P. V., Ishchenko, A. A., Chernonosov, A. A., Zharkov, D. O. & Koval, V. V., Feb 2022, In: Data in Brief. 40, 107760.

    Research output: Contribution to journal › Article › peer-review

  28. Dihydroartemisinin counteracts fibrotic portal hypertension via farnesoid X receptor-dependent inhibition of hepatic stellate cell contraction

    Endutkin, A., Popov, A., Yudkina, A., Makasheva, K., Afonnikov, D., Simmerling, C. & Zharkov, D., 1 Jan 2017, In: FEBS Journal. 284, 1, p. 114-133 20 p.

    Research output: Contribution to journal › Article › peer-review

  29. Displacement of Slow-Turnover DNA Glycosylases by Molecular Traffic on DNA

    Yudkina, A. V., Endutkin, A. V., Diatlova, E. A., Moor, N. A., Vokhtantsev, I. P., Grin, I. R. & Zharkov, D. O., Aug 2020, In: Genes. 11, 8, p. 1-21 21 p., 866.

    Research output: Contribution to journal › Article › peer-review

  30. Distinct Mechanisms of Target Search by Endonuclease VIII-like DNA Glycosylases

    Diatlova, E. A., Mechetin, G. V. & Zharkov, D. O., Oct 2022, In: Cells. 11, 20, 3192.

    Research output: Contribution to journal › Article › peer-review

  31. DNA Deformation-Coupled Recognition of 8-Oxoguanine: Conformational Kinetic Gating in Human DNA Glycosylase

    Li, H., Endutkin, A. V., Bergonzo, C., Fu, L., Grollman, A., Zharkov, D. O. & Simmerling, C., 22 Feb 2017, In: Journal of the American Chemical Society. 139, 7, p. 2682-2692 11 p.

    Research output: Contribution to journal › Article › peer-review

  32. DNA glycosylases for 8-oxoguanine repair in Staphylococcus aureus

    Endutkin, A. V., Panferova, E. P., Barmatov, A. E. & Zharkov, D. O., Sept 2021, In: DNA Repair. 105, p. 103160 103160.

    Research output: Contribution to journal › Article › peer-review

  33. Dynamics and Conformational Changes in Human NEIL2 DNA Glycosylase Analyzed by Hydrogen/Deuterium Exchange Mass Spectrometry

    Zhdanova, P. V., Ishchenko, A. A., Chernonosov, A. A., Zharkov, D. O. & Koval, V. V., 30 Jan 2022, In: Journal of Molecular Biology. 434, 2, 167334.

    Research output: Contribution to journal › Article › peer-review

  34. Dynamics of 8-Oxoguanine in DNA: Decisive Effects of Base Pairing and Nucleotide Context

    Ovcherenko, S. S., Shernyukov, A. V., Nasonov, D. M., Endutkin, A. V., Zharkov, D. O. & Bagryanskaya, E. G., 15 Mar 2023, In: Journal of the American Chemical Society. 145, 10, p. 5613-5617 5 p.

    Research output: Contribution to journal › Article › peer-review

  35. Effect of DNA Methylation on the 3′→5′ Exonuclease Activity of Major Human Abasic Site Endonuclease APEX1

    Endutkin, A. V., Yatsenko, D. D. & Zharkov, D. O., Jan 2022, In: Biochemistry (Moscow). 87, 1, p. 10-20 11 p., 1.

    Research output: Contribution to journal › Article › peer-review

  36. Effects of brain reninangiotensin system inhibition in ISIAH rats with inherited stress-induced arterial hypertension

    Klimov, L. O., Ryazanova, M. A., Fedoseeva, L. A. & Markel, A. L., 2017, In: Вавиловский журнал генетики и селекции. 21, 6, p. 735-741 7 p.

    Research output: Contribution to journal › Article › peer-review

  37. EGFP Reporters for Direct and Sensitive Detection of Mutagenic Bypass of DNA Lesions

    Rodriguez-Alvarez, M., Kim, D. & Khobta, A., 13 Jun 2020, In: Biomolecules. 10, 6, p. 1-19 19 p., 902.

    Research output: Contribution to journal › Article › peer-review

  38. Factors Affecting the Stability of the Trimer of 2'-Deoxyuridine 5'-Triphosphate Nucleotide Hydrolase from Escherichia coli

    Yudkina, A. V., Kovalenko, E. A., Endutkin, A. V., Panferova, E. P., Kirilenko, A. A., Kokhanenko, A. A. & Zharkov, D. O., Apr 2023, In: Molecular Biology. 57, 2, p. 312-319 8 p.

    Research output: Contribution to journal › Article › peer-review

  39. Fast Recombination of Charge-Transfer State in Organic Photovoltaic Composite of P3HT and Semiconducting Carbon Nanotubes Is the Reason for Its Poor Photovoltaic Performance

    Uvarov, M. N., Kobeleva, E. S., Degtyarenko, K. M., Zinovyev, V. A., Popov, A. A., Mostovich, E. A. & Kulik, L. V., 17 Feb 2023, In: International Journal of Molecular Sciences. 24, 4, 4098.

    Research output: Contribution to journal › Article › peer-review

  40. Genome-wide analysis of WD40 protein family and functional characterization of BvWD40-82 in sugar beet

    Wu, Z., Zhang, T., Li, J., Chen, S., Grin, I. R., Zharkov, D. O., Yu, B. & Li, H., 2 Jun 2023, In: Frontiers in Plant Science. 14, 1185440.

    Research output: Contribution to journal › Article › peer-review

  41. Global DNA dynamics of 8-oxoguanine repair by human OGG1 revealed by stopped-flow kinetics and molecular dynamics simulation

    Lukina, M. V., Koval, V. V., Lomzov, A. A., Zharkov, D. O. & Fedorova, O. S., 1 Oct 2017, In: Molecular BioSystems. 13, 10, p. 1954-1966 13 p.

    Research output: Contribution to journal › Article › peer-review

  42. Impact of delivery method on antiviral activity of phosphodiester, phosphorothioate, and phosphoryl guanidine oligonucleotides in MDCK cells infected with H5N1 bird flu virus

    Levina, A. S., Repkova, M. N., Chelobanov, B. P., Bessudnova, E. V., Mazurkova, N. A., Stetsenko, D. A. & Zarytova, V. F., 1 Jul 2017, In: Molecular Biology. 51, 4, p. 633-638 6 p.

    Research output: Contribution to journal › Article › peer-review

  43. Impact of Delivery Method on Antiviral Activity of Phosphodiester, Phosphorothioate, and Phosphoryl Guanidine Oligonucleotides in MDCK Cells Infected with H5N1 Bird Flu Virus

    Levina, A. S., Repkova, M. N., Chelobanov, B. P., Bessudnova, E. V., Mazurkova, N. A., Stetsenko, D. A. & Zarytova, V. F., 1 Jul 2017, In: Molekuliarnaia biologiia. 51, 4, p. 717-723 7 p.

    Research output: Contribution to journal › Article › peer-review

  44. Improving Stability and Specificity of CRISPR/Cas9 System by Selective Modification of Guide RNAs with 2'-fluoro and Locked Nucleic Acid Nucleotides

    Sakovina, L., Vokhtantsev, I., Vorobyeva, M., Vorobyev, P. & Novopashina, D., 3 Nov 2022, In: International Journal of Molecular Sciences. 23, 21, 13460.

    Research output: Contribution to journal › Article › peer-review

  45. Influence of pyridine-like ligands on the structure, photochemical and biological properties of nitro-nitrosyl ruthenium complexes

    Kostin, G. A., Mikhailov, A. A., Kuratieva, N. V., Pischur, D. P., Zharkov, D. O. & Grin, I. R., 7 Aug 2017, In: New Journal of Chemistry. 41, 15, p. 7758-7765 8 p.

    Research output: Contribution to journal › Article › peer-review

  46. Mechanism of stimulation of DNA binding of the transcription factors by human apurinic/apyrimidinic endonuclease 1, APE1

    Bazlekowa-Karaban, M., Prorok, P., Baconnais, S., Taipakova, S., Akishev, Z., Zembrzuska, D., Popov, A. V., Endutkin, A. V., Groisman, R., Ishchenko, A. A., Matkarimov, B. T., Bissenbaev, A., Le Cam, E., Zharkov, D. O., Tudek, B. & Saparbaev, M., 1 Oct 2019, In: DNA Repair. 82, p. 102698 18 p., 102698.

    Research output: Contribution to journal › Article › peer-review

  47. Mechanisms of Coronavirus Genome Stability As Potential Targets for Antiviral Drugs

    Yuyukina, S. K. & Zharkov, D. O., Aug 2022, In: Herald of the Russian Academy of Sciences. 92, 4, p. 470-478 9 p.

    Research output: Contribution to journal › Article › peer-review

  48. Mechanisms of the Specificity of the CRISPR/Cas9 System in Genome Editing

    Kulishova, L. M., Vokhtantsev, I. P., Kim, D. V. & Zharkov, D. O., Apr 2023, In: Molecular Biology. 57, 2, p. 258-271 14 p.

    Research output: Contribution to journal › Article › peer-review

  49. Methods of the synthesis of silicon-containing nanoparticles intended for nucleic acid delivery

    Levina, A. S., Repkova, M. N., Ismagilov, Z. R. & Zarytova, V. F., 7 Sept 2018, In: Eurasian Chemico-Technological Journal. 20, 3, p. 177-194 18 p.

    Research output: Contribution to journal › Article › peer-review

  50. Mild phenotype of knockouts of the major apurinic/apyrimidinic endonuclease APEX1 in a non-cancer human cell line

    Kim, D. V., Kulishova, L. M., Torgasheva, N. A., Melentyev, V. S., Dianov, G. L., Medvedev, S. P., Zakian, S. M. & Zharkov, D. O., Sept 2021, In: PLoS ONE. 16, 9 September, e0257473.

    Research output: Contribution to journal › Article › peer-review

  51. Miscoding and DNA Polymerase Stalling by Methoxyamine-Adducted Abasic Sites

    Yudkina, A. V. & Zharkov, D. O., 21 Feb 2022, In: Chemical Research in Toxicology. 35, 2, p. 303-314 12 p.

    Research output: Contribution to journal › Article › peer-review

  52. Molecular dynamics approach to identification of new OGG1 cancer-associated somatic variants with impaired activity

    Popov, A. V., Endutkin, A. V., Yatsenko, D. D., Yudkina, A. V., Barmatov, A. E., Makasheva, K. A., Raspopova, D. Y., Diatlova, E. A. & Zharkov, D. O., 1 Jan 2021, In: Journal of Biological Chemistry. 296, 100229.

    Research output: Contribution to journal › Article › peer-review

  53. Molecular dynamics simulation of the opposite-base preference and interactions in the active site of formamidopyrimidine-DNA glycosylase

    Popov, A. V., Endutkin, A. V., Vorobjev, Y. N. & Zharkov, D. O., 8 May 2017, In: BMC Structural Biology. 17, 1, p. 1-19 19 p., 5.

    Research output: Contribution to journal › Article › peer-review

  54. Natural Nucleoside Modifications in Guide RNAs Can Modulate the Activity of the CRISPR-Cas9 System In Vitro.

    Prokhorova, D. V., Vokhtantsev, I. P., Tolstova, P. O., Zhuravlev, E. S., Kulishova, L. M., Zharkov, D. O. & Stepanov, G. A., Dec 2022, In: The CRISPR journal. 5, 6, p. 799-812 14 p.

    Research output: Contribution to journal › Article › peer-review

  55. Non-agglomerated silicon-organic nanoparticles and their nanocomplexes with oligonucleotides: Synthesis and properties

    Levina, A. S., Repkova, M. N., Shikina, N. V., Ismagilov, Z. R., Yashnik, S. A., Semenov, D. V., Savinovskaya, Y. I., Mazurkova, N. A., Pyshnaya, I. A. & Zarytova, V. F., 21 Sept 2018, In: Beilstein Journal of Nanotechnology. 9, 1, p. 2516-2525 10 p.

    Research output: Contribution to journal › Article › peer-review

  56. Nuclear delivery of oligonucleotides via nanocomposites based on TiO2 nanoparticles and polylysine

    Chelobanov, B. P., Repkova, M. N., Baiborodin, S. I., Ryabchikova, E. I. & Stetsenko, D. A., 9 Nov 2017, In: Molekuliarnaia biologiia. 51, 5, p. 797-808 12 p.

    Research output: Contribution to journal › Article › peer-review

  57. Nuclear delivery of oligonucleotides via nanocomposites based on TiO2 nanoparticles and polylysine

    Chelobanov, B. P., Repkova, M. N., Baiborodin, S. I., Ryabchikova, E. I. & Stetsenko, D. A., 1 Sept 2017, In: Molecular Biology. 51, 5, p. 695-704 10 p.

    Research output: Contribution to journal › Article › peer-review

  58. Nucleotide modifications decrease innate immune response induced by synthetic analogs of snRNAs and snoRNAs

    Stepanov, G., Zhuravlev, E., Shender, V., Nushtaeva, A., Balakhonova, E., Mozhaeva, E., Kasakin, M., Koval, V., Lomzov, A., Pavlyukov, M., Malyants, I., Zhorov, M., Kabilova, T., Chernolovskaya, E., Govorun, V., Kuligina, E., Semenov, D. & Richter, V., 2 Nov 2018, In: Genes. 9, 11, 18 p., 531.

    Research output: Contribution to journal › Article › peer-review

  59. Observations on Protecting Groups in the Synthesis of Mono- and Triphosphates of Amino Alcohols

    Sherstyuk, Y. V., Chalova, P. V., Silnikov, V. N. & Abramova, T. V., 4 Mar 2019, In: Organic Preparations and Procedures International. 51, 2, p. 182-191 10 p.

    Research output: Contribution to journal › Article › peer-review

  60. Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation

    Gruber, D. R., Toner, J. J., Miears, H. L., Shernyukov, A. V., Kiryutin, A. S., Lomzov, A. A., Endutkin, A. V., Grin, I. R., Petrova, D. V., Kupryushkin, M. S., Yurkovskaya, A. V., Johnson, E. C., Okon, M., Bagryanskaya, E. G., Zharkov, D. O. & Smirnov, S. L., 16 Nov 2018, In: Nucleic Acids Research. 46, 20, p. 10827-10839 13 p.

    Research output: Contribution to journal › Article › peer-review

  61. Pan-cancer antagonistic inhibition pattern of ATM-driven G2/M checkpoint pathway vs other DNA repair pathways

    Zolotovskaia, M. A., Modestov, A. A., Suntsova, M. V., Rachkova, A. A., Koroleva, E. V., Poddubskaya, E. V., Sekacheva, M. I., Tkachev, V. S., Garazha, A. V., Glusker, A. A., Seryakov, A. P., Vladimirova, U. S., Rumiantsev, P. O., Moisseev, A. A., Zharkov, D. O., Kuzmin, D. V., Zhao, X., Prassolov, V. S., Shegay, P. V., Li, X., & 5 othersSteinbichler, T. B., Kim, E., Sorokin, M. I., Wang, Y. & Buzdin, A. A., Mar 2023, In: DNA Repair. 123, 18 p., 103448.

    Research output: Contribution to journal › Article › peer-review

  62. Photoactivatable CRISPR/Cas9 System

    Akhmetova, E. A., Golyshev, V. M., Vokhtantcev, I. P., Meschaninova, M. I., Venyaminova, A. G. & Novopashina, D. S., Mar 2021, In: Russian Journal of Bioorganic Chemistry. 47, 2, p. 496-504 9 p.

    Research output: Contribution to journal › Article › peer-review

  63. Photoactivatable nanocrispr/cas9 system based on crrna reversibly immobilized on carbon nanoparticles

    Semikolenova, O., Sakovina, L., Akhmetova, E., Kim, D., Vokhtantsev, I., Golyshev, V., Vorobyeva, M., Novopashin, S. & Novopashina, D., 1 Oct 2021, In: International Journal of Molecular Sciences. 22, 20, 10919.

    Research output: Contribution to journal › Article › peer-review

  64. Photoinduced inhibition of DNA repair enzymes and the possible mechanism of photochemical transformations of the ruthenium nitrosyl complex [RuNO(β-Pic)2(NO2)2OH

    Mikhailov, A. A., Khantakova, D. V., Nichiporenko, V. A., Glebov, E. M., Grivin, V. P., Plyusnin, V. F., Yanshole, V. V., Petrova, D. V., Kostin, G. A. & Grin, I. R., 11 Dec 2019, In: Metallomics : integrated biometal science. 11, 12, p. 1999-2009 11 p.

    Research output: Contribution to journal › Article › peer-review

  65. Platinum Polyoxoniobates Form Adducts with DNA

    Yudkina, A. V., Sokolov, M. N., Abramov, P. A., Grin, I. R. & Zharkov, D. O., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 641-646 6 p.

    Research output: Contribution to journal › Article › peer-review

  66. P2O5-Promoted Cyclization of Di[aryl(hetaryl)methyl] Malonic Acids as a Pathway to Fused Spiro[4.4]nonane-1,6-Diones

    Ivanov, K. S., Riesebeck, T., Skolyapova, A., Liakisheva, I., Kazantsev, M. S., Sonina, A. A., Peshkov, R. Y. & Mostovich, E. A., 4 Mar 2022, In: Journal of Organic Chemistry. 87, 5, p. 2456-2469 14 p.

    Research output: Contribution to journal › Article › peer-review

  67. Reading and misreading 8-oxoguanine, a paradigmatic ambiguous nucleobase

    Yudkina, A. V., Shilkin, E. S., Endutkin, A. V., Makarova, A. V. & Zharkov, D. O., 1 May 2019, In: Crystals. 9, 5, 31 p., 269.

    Research output: Contribution to journal › Article › peer-review

  68. Recognition but no repair of abasic site in single-stranded DNA by human ribosomal uS3 protein residing within intact 40S subunit

    Grosheva, A. S., Zharkov, D. O., Stahl, J., Gopanenko, A. V., Tupikin, A. E., Kabilov, M. R., Graifer, D. M. & Karpova, G. G., 20 Apr 2017, In: Nucleic Acids Research. 45, 7, p. 3833-3843 11 p.

    Research output: Contribution to journal › Article › peer-review

  69. Recognition of a Clickable Abasic Site Analog by DNA Polymerases and DNA Repair Enzymes

    Endutkin, A. V., Yudkina, A. V., Zharkov, T. D., Kim, D. V. & Zharkov, D. O., Nov 2022, In: International Journal of Molecular Sciences. 23, 21, 13353.

    Research output: Contribution to journal › Article › peer-review

  70. Relative Efficiency of Recognition of 5-Methylcytosine and 5-Hydroxymethylcytosine by Methyl-Dependent DNA Endonuclease GlaI

    Petrova, D. V., Naumenko, M. B., Khantakova, D. V., Grin, I. R. & Zharkov, D. O., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 625-629 5 p.

    Research output: Contribution to journal › Article › peer-review

  71. Requirements for DNA bubble structure for efficient cleavage by helix-two-turn-helix DNA glycosylases

    Makasheva, K. A., Endutkin, A. V. & Zharkov, D. O., Jan 2020, In: Mutagenesis. 35, 1, p. 119-128 10 p.

    Research output: Contribution to journal › Article › peer-review

  72. Residue coevolution reveals functionally important intramolecular interactions in formamidopyrimidine-DNA glycosylase

    Endutkin, A. V., Koptelov, S. S., Popov, A. V., Torgasheva, N. A., Lomzov, A. A., Tsygankova, A. R., Skiba, T. V., Afonnikov, D. A. & Zharkov, D. O., 1 Sept 2018, In: DNA Repair. 69, p. 24-33 10 p.

    Research output: Contribution to journal › Article › peer-review

  73. Response of PRIMPOL-Knockout Human Lung Adenocarcinoma A549 Cells to Genotoxic Stress

    Gromova, A. S., Boldinova, E. O., Kim, D. V., Chuprov-Netochin, R. N., Leonov, S. V., Pustovalova, M. V., Zharkov, D. O. & Makarova, A. V., Nov 2023, In: Biochemistry (Moscow). 88, 11, p. 1933-1943 11 p.

    Research output: Contribution to journal › Article › peer-review

  74. Self-cleaning photoactive cotton fabric modified with nanocrystalline TiO2 for efficient degradation of volatile organic compounds and DNA contaminants

    Solovyeva, M., Selishchev, D., Cherepanova, S., Stepanov, G., Zhuravlev, E., Richter, V. & Kozlov, D., 15 May 2020, In: Chemical Engineering Journal. 388, 13 p., 124167.

    Research output: Contribution to journal › Article › peer-review

  75. Stalling of Eukaryotic Translesion DNA Polymerases at DNA-Protein Cross-Links

    Yudkina, A. V., Shilkin, E. S., Makarova, A. V. & Zharkov, D. O., Feb 2022, In: Genes. 13, 2, 166.

    Research output: Contribution to journal › Article › peer-review

  76. Symmetric Spirenes: Promising Building Blocks for New Generation Opto-Electronic Materials

    Шеповалов, К. М., Пешков, Р. Ю., Бенасси, Э. & Мостович, Е. А., 20 Jun 2022, In: Physical Chemistry Chemical Physics. 24, 27, p. 16836-16851 16 p.

    Research output: Contribution to journal › Article › peer-review

  77. Template Properties of 5-Methyl-2'-Deoxycytidine and 5-Hydroxymethyl-2'-Deoxycytidine in Reactions with Human Translesion and Reparative DNA Polymerases

    Shilkin, E. S., Petrova, D. V., Poltorachenko, V. A., Boldinova, E. O., Zharkov, D. O. & Makarova, A. V., Mar 2021, In: Molecular Biology. 55, 2, p. 267-272 6 p.

    Research output: Contribution to journal › Article › peer-review

  78. Toward gene therapy of hypertension: Experimental study on hypertensive ISIAH rats

    Repkova, M. N., Levina, A. S., Seryapina, A. A., Shikina, N. V., Bessudnova, E. V., Zarytova, V. F. & Markel, A. L., 1 Apr 2017, In: Biochemistry (Moscow). 82, 4, p. 454-457 4 p.

    Research output: Contribution to journal › Article › peer-review

  79. Translesion activity of PrimPol on DNA with cisplatin and DNA–protein cross-links

    Boldinova, E. O., Yudkina, A. V., Shilkin, E. S., Gagarinskaya, D. I., Baranovskiy, A. G., Tahirov, T. H., Zharkov, D. O. & Makarova, A. V., Dec 2021, In: Scientific Reports. 11, 1, 17588.

    Research output: Contribution to journal › Article › peer-review

  80. Variable termination sites of DNA polymerases encountering a DNA–protein cross-link

    Yudkina, A. V., Dvornikova, A. P. & Zharkov, D. O., 1 Jun 2018, In: PLoS ONE. 13, 6, p. e0198480 17 p., 0198480.

    Research output: Contribution to journal › Article › peer-review

  81. Альтернативные механизмы мутагенеза в mCpG-сайтах при репликации и репарации

    Shilkin, E. S., Petrova, D. V., Zharkov, D. O. & Makarova, A. V., 2023, In: Molekuliarnaia biologiia. 57, 4, p. 587-596 10 p., 3.

    Research output: Contribution to journal › Article › peer-review

  82. Биологические свойства вируса гриппа H6N8‐субтипа, выделенного от диких птиц на юге Западной Сибири

    Li, X., Dubovitskiy, N. A., Derko, A. A., Glushchenko, A. V., Sobolev, I. A., Druzyaka, A. V., Medzhidova, M. M., Musinova, E. M., Sharshov, K. A. & Shestopalov, A. M., Jan 2021, In: South of Russia: Ecology, Development. 16, 1 (58), p. 45-52 8 p., 5.

    Research output: Contribution to journal › Article › peer-review

  83. Влияние метилирования ДНК на 3′→5′-экзонуклеазную активность основной апурин-апиримидиновой эндонуклеазы человека APEX1

    Ендуткин, А. В., Яценко, Д. Д. & Жарков, Д. О., 2022, In: Биохимия. 87, 1, p. 3-15 13 p., 1.

    Research output: Contribution to journal › Article › peer-review

  84. Изучение свойств рекомбинантной эндонуклеазы IV Mycobacterium tuberculosis

    Dymova, M. A., Endutkin, A. V., Polunovsky, V. V., Zakabunin, A. I., Khrapov, E. A., Torgasheva, N. A., Yudkina, A. V., Mechetin, G. V., Filipenko, M. L. & Zharkov, D. O., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 258-268 11 p., 7.

    Research output: Contribution to journal › Article › peer-review

  85. Матричные свойства 5-метил-2'-дезоксицитидина и 5-гидроксиметил-2'-дезоксицитидина в реакциях с транслезионными и репаратичными ДНК-полимеразами человека

    Shilkin, E. S., Petrova, D. V., Poltorachenko, V. A., Boldinova, E. O., Zharkov, D. O. & Makarova, A. V., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 305-311 7 p., 11.

    Research output: Contribution to journal › Article › peer-review

  86. Механизмы обеспечения стабильности генома коронавирусов как потенциальные мишени для противовирусных средств

    Ююкина, С. К. & Жарков, Д. О., 14 Mar 2022, In: Вестник РАН. 92, 8, p. 737-746 10 p., 5.

    Research output: Contribution to journal › Article › peer-review

  87. Механизмы специфичности системы CRISPR/Cas9 в геномном редактировании

    Kulishova, L. M., Vokhtantsev, I. P., Kim, D. V. & Zharkov, D. O., 2023, In: Molekuliarnaia biologiia. 57, 2, p. 269-284 16 p., 12.

    Research output: Contribution to journal › Article › peer-review

  88. Рибонуклеаза Ribonuclease pumilus ингибирует миграцию клеток аденокарциномы двенадцатиперстной кишки человека HuTu 80

    Zelenikhin, P. V., Ead Mohamed, I. S., Nadyrova, A. I., Sirotkina, A. A., Ulyanova, V. V., Mironova, N. L., Mitkevich, V. A., Makarov, A. A., Zenkova, M. A. & Ilinskaya, O. N., 1 Jan 2020, In: Molekuliarnaia biologiia. 54, 1, p. 146-152 7 p.

    Research output: Contribution to journal › Article › peer-review

  89. Факторы, влияющие на стабильность тримерной формы 2'-дезоксиуридин-5'-трифосфатнуклеотидгидролазы Escherichia coli

    Yudkina, A. V., Kovalenko, E. A., Endutkin, A. V., Panferova, E. P., Kirilenko, A. A., Kokhanenko, A. A. & Zharkov, D. O., 1 Mar 2023, In: Molekuliarnaia biologiia. 57, 2, p. 330-339 10 p., 17.

    Research output: Contribution to journal › Article › peer-review

  90. Характеристика деметилирующей ДНК-гликозилазы ROS1 из Nicotiana tabacum L

    Петрова, Д. В., Пермякова, Н. В., Грин, И. Р. & Жарков, Д. О., Jul 2022, In: Вавиловский журнал генетики и селекции. 26, 4, p. 341-348 8 p., 1.

    Research output: Contribution to journal › Article › peer-review

  91. Экзосомы молока лошади: выделение, микроскопический и биохимический анализ, перспективы использования

    SEDYKH, S. E., KULESHOVA, A. E., PURVINSH, L. V., BURKOVA, E. E., GRIGORIEVA, A. E., EVTUSHENKO, E. G., STEPANOV, G. A., RYABCHIKOVA, E. I. & NEVINSKII, G. A., 2020, In: Biotekhnologiya. 36, 5, p. 62-71 10 p.

    Research output: Contribution to journal › Article › peer-review

  92. Review article › Research › Peer-reviewed

  93. Aberrant base excision repair pathway of oxidatively damaged DNA: Implications for degenerative diseases

    Talhaoui, I., Matkarimov, B. T., Tchenio, T., Zharkov, D. O. & Saparbaev, M. K., 1 Jun 2017, In: Free Radical Biology and Medicine. 107, p. 266-277 12 p.

    Research output: Contribution to journal › Review article › peer-review

  94. Antisense oligonucleotides for the arterial hypertension mechanisms study and therapy

    Klimov, L. O., Seryapina, A. A., Zarytova, V. F., Levina, A. S. & Markel, A. L., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 2, p. 240-247 8 p.

    Research output: Contribution to journal › Review article › peer-review

  95. Base Excision DNA Repair Deficient Cells: From Disease Models to Genotoxicity Sensors

    Kim, D. V., Makarova, A. V., Miftakhova, R. R. & Zharkov, D. O., 1 Jan 2019, In: Current Pharmaceutical Design. 25, 3, p. 298-312 15 p.

    Research output: Contribution to journal › Review article › peer-review

  96. Base Excision DNA Repair in Plants: Arabidopsis and Beyond

    Grin, I. R., Petrova, D. V., Endutkin, A. V., Ma, C., Yu, B., Li, H. & Zharkov, D. O., 29 Sept 2023, In: International Journal of Molecular Sciences. 24, 19, 14746.

    Research output: Contribution to journal › Review article › peer-review

  97. Boron-containing nucleosides as tools for boron-neutron capture therapy

    Zharkov, D. O., Yudkina, A., Riesebeck, T., Loshchenova, P. S., Mostovich, E. A. & Dianov, G. L., 2021, In: American journal of cancer research. 11, 10, p. 4668-4682 15 p.

    Research output: Contribution to journal › Review article › peer-review

  98. DNA Damage Response and Repair in Boron Neutron Capture Therapy

    Mechetin, G. V. & Zharkov, D. O., 2 Jan 2023, In: Genes. 14, 1, 127.

    Research output: Contribution to journal › Review article › peer-review

  99. Evolutionary Origins of DNA Repair Pathways: Role of Oxygen Catastrophe in the Emergence of DNA Glycosylases

    Prorok, P., Grin, I. R., Matkarimov, B. T., Ishchenko, A. A., Laval, J., Zharkov, D. O. & Saparbaev, M., Jul 2021, In: Cells. 10, 7, 1591.

    Research output: Contribution to journal › Review article › peer-review

  100. GO System, a DNA Repair Pathway to Cope with Oxidative Damage

    Endutkin, A. V. & Zharkov, D. O., Mar 2021, In: Molecular Biology. 55, 2, p. 193-210 18 p.

    Research output: Contribution to journal › Review article › peer-review

  101. GO-система: путь репарации ДНК для борьбы с окислительными повреждениями

    Endutkin, A. V. & Zharkov, D. O., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 223-242 20 p., 5.

    Research output: Contribution to journal › Review article › peer-review

  102. Guide RNA modification as a way to improve CRISPR/Cas9-based genome-editing systems

    Filippova, J., Matveeva, A., Zhuravlev, E. & Stepanov, G., 1 Dec 2019, In: Biochimie. 167, p. 49-60 12 p.

    Research output: Contribution to journal › Review article › peer-review

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