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Knomics-Biota - A system for exploratory analysis of human gut microbiota data. / Efimova, Daria; Tyakht, Alexander; Popenko, Anna et al.

In: BioData Mining, Vol. 11, No. 1, 25, 06.11.2018, p. 25.

Research output: Contribution to journal › Article › peer-review

Harvard

Efimova, D, Tyakht, A, Popenko, A, Vasilyev, A, Altukhov, I, Dovidchenko, N, Odintsova, V, Klimenko, N, Loshkarev, R, Pashkova, M, Elizarova, A, Voroshilova, V, Slavskii, S, Pekov, Y, Filippova, E, Shashkova, T, Levin, E & Alexeev, D 2018, 'Knomics-Biota - A system for exploratory analysis of human gut microbiota data', BioData Mining, vol. 11, no. 1, 25, pp. 25. https://doi.org/10.1186/s13040-018-0187-3

APA

Efimova, D., Tyakht, A., Popenko, A., Vasilyev, A., Altukhov, I., Dovidchenko, N., Odintsova, V., Klimenko, N., Loshkarev, R., Pashkova, M., Elizarova, A., Voroshilova, V., Slavskii, S., Pekov, Y., Filippova, E., Shashkova, T., Levin, E., & Alexeev, D. (2018). Knomics-Biota - A system for exploratory analysis of human gut microbiota data. BioData Mining, 11(1), 25. [25]. https://doi.org/10.1186/s13040-018-0187-3

Vancouver

Efimova D, Tyakht A, Popenko A, Vasilyev A, Altukhov I, Dovidchenko N et al. Knomics-Biota - A system for exploratory analysis of human gut microbiota data. BioData Mining. 2018 Nov 6;11(1):25. 25. doi: 10.1186/s13040-018-0187-3

Author

Efimova, Daria ; Tyakht, Alexander ; Popenko, Anna et al. / Knomics-Biota - A system for exploratory analysis of human gut microbiota data. In: BioData Mining. 2018 ; Vol. 11, No. 1. pp. 25.

BibTeX

@article{e1846b35e1fc4751a3f23cae5795af95,
title = "Knomics-Biota - A system for exploratory analysis of human gut microbiota data",
abstract = "Background: Metagenomic surveys of human microbiota are becoming increasingly widespread in academic research as well as in food and pharmaceutical industries and clinical context. Intuitive tools for investigating experimental data are of high interest to researchers. Results: Knomics-Biota is a web-based resource for exploratory analysis of human gut metagenomes. Users can generate and share analytical reports corresponding to common experimental schemes (like case-control study or paired comparison). Interactive visualizations and statistical analysis are provided in association with the external factors and in the context of thousands of publicly available datasets arranged into thematic collections. The web-service is available at https://biota.knomics.ru. Conclusions: Knomics-Biota web service is a comprehensive tool for interactive metagenomic data analysis.",
keywords = "Bioinformatic pipeline, Metagenome, Microbiome, Web service",
author = "Daria Efimova and Alexander Tyakht and Anna Popenko and Anatoly Vasilyev and Ilya Altukhov and Nikita Dovidchenko and Vera Odintsova and Natalya Klimenko and Robert Loshkarev and Maria Pashkova and Anna Elizarova and Viktoriya Voroshilova and Sergei Slavskii and Yury Pekov and Ekaterina Filippova and Tatiana Shashkova and Evgenii Levin and Dmitry Alexeev",
note = "Publisher Copyright: {\textcopyright} 2018 The Author(s).",
year = "2018",
month = nov,
day = "6",
doi = "10.1186/s13040-018-0187-3",
language = "English",
volume = "11",
pages = "25",
journal = "BioData Mining",
issn = "1756-0381",
publisher = "BioMed Central Ltd.",
number = "1",

}

RIS

TY - JOUR

T1 - Knomics-Biota - A system for exploratory analysis of human gut microbiota data

AU - Efimova, Daria

AU - Tyakht, Alexander

AU - Popenko, Anna

AU - Vasilyev, Anatoly

AU - Altukhov, Ilya

AU - Dovidchenko, Nikita

AU - Odintsova, Vera

AU - Klimenko, Natalya

AU - Loshkarev, Robert

AU - Pashkova, Maria

AU - Elizarova, Anna

AU - Voroshilova, Viktoriya

AU - Slavskii, Sergei

AU - Pekov, Yury

AU - Filippova, Ekaterina

AU - Shashkova, Tatiana

AU - Levin, Evgenii

AU - Alexeev, Dmitry

N1 - Publisher Copyright: © 2018 The Author(s).

PY - 2018/11/6

Y1 - 2018/11/6

N2 - Background: Metagenomic surveys of human microbiota are becoming increasingly widespread in academic research as well as in food and pharmaceutical industries and clinical context. Intuitive tools for investigating experimental data are of high interest to researchers. Results: Knomics-Biota is a web-based resource for exploratory analysis of human gut metagenomes. Users can generate and share analytical reports corresponding to common experimental schemes (like case-control study or paired comparison). Interactive visualizations and statistical analysis are provided in association with the external factors and in the context of thousands of publicly available datasets arranged into thematic collections. The web-service is available at https://biota.knomics.ru. Conclusions: Knomics-Biota web service is a comprehensive tool for interactive metagenomic data analysis.

AB - Background: Metagenomic surveys of human microbiota are becoming increasingly widespread in academic research as well as in food and pharmaceutical industries and clinical context. Intuitive tools for investigating experimental data are of high interest to researchers. Results: Knomics-Biota is a web-based resource for exploratory analysis of human gut metagenomes. Users can generate and share analytical reports corresponding to common experimental schemes (like case-control study or paired comparison). Interactive visualizations and statistical analysis are provided in association with the external factors and in the context of thousands of publicly available datasets arranged into thematic collections. The web-service is available at https://biota.knomics.ru. Conclusions: Knomics-Biota web service is a comprehensive tool for interactive metagenomic data analysis.

KW - Bioinformatic pipeline

KW - Metagenome

KW - Microbiome

KW - Web service

UR - http://www.scopus.com/inward/record.url?scp=85056128308&partnerID=8YFLogxK

U2 - 10.1186/s13040-018-0187-3

DO - 10.1186/s13040-018-0187-3

M3 - Article

C2 - 30450127

AN - SCOPUS:85056128308

VL - 11

SP - 25

JO - BioData Mining

JF - BioData Mining

SN - 1756-0381

IS - 1

M1 - 25

ER -

ID: 17411118