1. 2020
  2. Catalytically Competent Conformation of the Active Site of Human 8-Oxoguanine-DNA Glycosylase

    Popov, A. V., Yudkina, A. V., Vorobjev, Y. N. & Zharkov, D. O., 17 Feb 2020, In: Biochemistry (Moscow). 85, 2, p. 192-204 13 p.

    Research output: Contribution to journalArticlepeer-review

  3. Mechanistic insight into the role of Poly(ADP-ribosyl)ation in DNA topology modulation and response to DNA damage

    Matkarimov, B. T., Zharkov, D. O. & Saparbaev, M. K., 13 Feb 2020, In: Mutagenesis. 35, 1, p. 107-118 12 p.

    Research output: Contribution to journalReview articlepeer-review

  4. Preface

    Zharkov, D. O., 1 Jan 2020, In: Advances in experimental medicine and biology. 1241, p. v

    Research output: Contribution to journalEditorialpeer-review

  5. Requirements for DNA bubble structure for efficient cleavage by helix-two-turn-helix DNA glycosylases

    Makasheva, K. A., Endutkin, A. V. & Zharkov, D. O., Jan 2020, In: Mutagenesis. 35, 1, p. 119-128 10 p.

    Research output: Contribution to journalArticlepeer-review

  6. Activity of DNA glycosylases on non-canonical DNA substrates

    Дятлова, Е. А. & Жарков, Д. О., 2020, p. 568. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  7. Chapter 8: Substrate specificities of DNA glycosylases in vitro and in vivo: Substrate specificities of DNA glycosylases in vitro and in vivo

    Ендуткин, А. В. & Жарков, Д. О., 2020, DNA Damage, DNA Repair and Disease: Volume 1. Dizdaroglu, M. & Lloyd, R. S. (eds.). London: Royal Society of Chemistry, Vol. 1. p. 175-203 29 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

  8. Platinum polyoxoniobates have a potential as an anticancer agent

    Юдкина, А. В., Вохтанцев, И. П., Соколов, М. Н., Абрамов, П. А., Абрамов, П. А., Грин, И. Р. & Жарков, Д. О., 2020, BIOINFORMATICS OF GENOME REGULATION AND STRUCTURE/SYSTEMS BIOLOGY (BGRS/SB-2020): The Twelfth International Multiconference Abstracts. Новосибирск: Институт цитологии и генетики СО РАН, p. 604 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

  9. Preface

    Zharkov, D. O., 2020, MECHANISMS OF GENOME PROTECTION AND REPAIR. Zharkov, DO. (ed.). Springer International Publishing AG, p. V-V 1 p. (Advances in Experimental Medicine and Biology; vol. 1241).

    Research output: Chapter in Book/Report/Conference proceedingForeword/postscriptResearchpeer-review

  10. Методы редактирования генов и геномов

    Аббат, А. В., Александрушкина, Н. А., Андреенков, О. В., Артюхов, А. С., Байрамова, Э. М., Балацкий, А. В., Березиков, Е. В., Василенко, Ю. С., Васильев, А. В., Васильев, П. А., Волкова, Е. И., Воротеляк, Е. А., Вохтанцев, И. П., Вударски, Я., Вяткин, Ю. В., Георгиев, П. Г., Герасимова, С. В., Гершович, П. М., Гольцова, А. С., Гущин, Д. Ю., & 60 othersДавлетшина, Г. И., Дашинимаев, Э. Б., Дейнеко, Е. В., Демаков, С. А., Дианов, Г. Л., Дыйканов, Д. Т., Евсеева, М. Н., Егорова, А. А., Елисафенко, Е. А., Ендуткин, А. В., Жарков, Д. О., Живень, М. К., Журавлев, Е. С., Загорская, А. А., Закиян, С. М., Захарова, И. С., Зотова, А. А., Иванова, К. А., Карагуяр, М. Н., Карпов, В. Л., Коваленко, В. Р., Кулебякин, К. Ю., Кулишова, Л. М., Лактионов, П. П., Мазуров, Д. В., Макаревич, П. И., Максименко, О. Г., Маланханова, Т. Б., Малахова, А. А., Маренкова, Т. В., Матвеева, А. М., Медведев, С. П., Мещерякова, Н. В., Пермякова, Н. В., Прокофьев, А. В., Рождественский, Т. С., Романов, С. Е., Ростовцева, А. И., Рубцов, Ю. П., Рысенкова, К. Д., Семина, Е. В., Сидорчук, Ю. В., Скрябин, Б. В., Скрябина, М. Н., Смирнова, А. М., Сорокин, М. А., Степанов, Г. А., Стуканев, В. К., Торгашева, Н. А., Тюрин-Кузьмин, П. А., Устьянцева, Е. И., Устьянцев, К. В., Чичерин, И. В., Шарипова, Д. В., Шевченко, А. И., Шепелев, М. В., Шерстюк, В. В., Шмакова, А. А., Щепетов, Д. М. & Юрлова, Е. В., 2020, Новосибирск: ФГУП "Издательство СО РАН". 550 p.

    Research output: Book/ReportBookResearchpeer-review

  11. Получение модифицированных ДНК-субстратов для исследования механизма действия нуклеаз геномного редактирования

    Вохтанцев, И. П., Ендуткин, А. В., Кулишова, Л. М., Торгашева, Н. А., Дианов, Г. Л. & Жарков, Д. О., 2020, Методы редактирования генов и геномов. Закиян, С. М., Медведев, С. П., Дементьева, Е. В. & Власов, В. В. (eds.). Новосибирск: ФГУП "Издательство СО РАН", p. 485-493 9 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

  12. 2019
  13. Transient protein–protein complexes in base excision repair

    Endutkin, A. V., Yudkina, A. V., Sidorenko, V. S. & Zharkov, D. O., 22 Nov 2019, In: Journal of Biomolecular Structure and Dynamics. 37, 17, p. 4407-4418 12 p.

    Research output: Contribution to journalReview articlepeer-review

  14. Platinum Polyoxoniobates Form Adducts with DNA

    Yudkina, A. V., Sokolov, M. N., Abramov, P. A., Grin, I. R. & Zharkov, D. O., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 641-646 6 p.

    Research output: Contribution to journalArticlepeer-review

  15. Relative Efficiency of Recognition of 5-Methylcytosine and 5-Hydroxymethylcytosine by Methyl-Dependent DNA Endonuclease GlaI

    Petrova, D. V., Naumenko, M. B., Khantakova, D. V., Grin, I. R. & Zharkov, D. O., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 625-629 5 p.

    Research output: Contribution to journalArticlepeer-review

  16. Mechanism of stimulation of DNA binding of the transcription factors by human apurinic/apyrimidinic endonuclease 1, APE1

    Bazlekowa-Karaban, M., Prorok, P., Baconnais, S., Taipakova, S., Akishev, Z., Zembrzuska, D., Popov, A. V., Endutkin, A. V., Groisman, R., Ishchenko, A. A., Matkarimov, B. T., Bissenbaev, A., Le Cam, E., Zharkov, D. O., Tudek, B. & Saparbaev, M., 1 Oct 2019, In: DNA Repair. 82, p. 102698 18 p., 102698.

    Research output: Contribution to journalArticlepeer-review

  17. Isoforms of base excision repair enzymes produced by alternative splicing

    Boldinova, E. O., Khairullin, R. F., Makarova, A. V. & Zharkov, D. O., 3 Jul 2019, In: International Journal of Molecular Sciences. 20, 13, 22 p., 3279.

    Research output: Contribution to journalReview articlepeer-review

  18. DNA lesions against genome editing: how Cas9 cleaves the substrates with damages

    Vokhtantsev, I. P., Endutkin, A. V., Kulishova, L. M. & Zharkov, O., Jul 2019, In: FEBS Open Bio. 9, p. 397-397 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  19. Photocleavable guide RNAs for controllable genome editing with CRISPR/Cas9 system

    Novopashina, D., Khabardina, E., Vokhtantsev, I., Kim, D., Venyaminova, A. & Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 400-400 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  20. Structural and biochemical insights of new atypical Fpg/Nei DNA-glycosylases

    Yudkina, A., Garcia-Diaz, M. & Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 252-252 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  21. The role of transient protein-protein interactions in base excision repair

    Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 254-254 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  22. Critical Sites of DNA Backbone Integrity for Damaged Base Removal by Formamidopyrimidine-DNA Glycosylase

    Endutkin, A. V. & Zharkov, D. O., 18 Jun 2019, In: Biochemistry. 58, 24, p. 2740-2749 10 p.

    Research output: Contribution to journalArticlepeer-review

  23. Reading and misreading 8-oxoguanine, a paradigmatic ambiguous nucleobase

    Yudkina, A. V., Shilkin, E. S., Endutkin, A. V., Makarova, A. V. & Zharkov, D. O., 1 May 2019, In: Crystals. 9, 5, 31 p., 269.

    Research output: Contribution to journalArticlepeer-review

  24. Conformational Dynamics of Damage Processing by Human DNA Glycosylase NEIL1

    Kladova, O. A., Grin, I. R., Fedorova, O. S., Kuznetsov, N. A. & Zharkov, D. O., 15 Mar 2019, In: Journal of Molecular Biology. 431, 6, p. 1098-1112 15 p.

    Research output: Contribution to journalArticlepeer-review

  25. Base Excision DNA Repair Deficient Cells: From Disease Models to Genotoxicity Sensors

    Kim, D. V., Makarova, A. V., Miftakhova, R. R. & Zharkov, D. O., 1 Jan 2019, In: Current Pharmaceutical Design. 25, 3, p. 298-312 15 p.

    Research output: Contribution to journalReview articlepeer-review

  26. abstract OR-3: Fleeting ensembles: Transient protein-protein interactions in DNA repair

    Жарков, Д. О., 2019, In: International Journal of Biomedicine. 9, S1, p. 6-7 2 p.

    Research output: Contribution to journalConference articlepeer-review

  27. 2018
  28. Aberrant repair initiated by the adenine-DNA glycosylase does not play a role in UV-induced mutagenesis in Escherichia coli

    Zutterling, C., Mursalimov, A., Talhaoui, I., Koshenov, Z., Akishev, Z., Bissenbaev, A. K., Mazon, G., Geacintov, N. E., Gasparutto, D., Groisman, R., Zharkov, D. O., Matkarimov, B. T. & Saparbaev, M., 5 Dec 2018, In: PeerJ. 6, 12, p. e6029 23 p., 6029.

    Research output: Contribution to journalArticlepeer-review

  29. Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation

    Gruber, D. R., Toner, J. J., Miears, H. L., Shernyukov, A. V., Kiryutin, A. S., Lomzov, A. A., Endutkin, A. V., Grin, I. R., Petrova, D. V., Kupryushkin, M. S., Yurkovskaya, A. V., Johnson, E. C., Okon, M., Bagryanskaya, E. G., Zharkov, D. O. & Smirnov, S. L., 16 Nov 2018, In: Nucleic Acids Research. 46, 20, p. 10827-10839 13 p.

    Research output: Contribution to journalArticlepeer-review

  30. Residue coevolution reveals functionally important intramolecular interactions in formamidopyrimidine-DNA glycosylase

    Endutkin, A. V., Koptelov, S. S., Popov, A. V., Torgasheva, N. A., Lomzov, A. A., Tsygankova, A. R., Skiba, T. V., Afonnikov, D. A. & Zharkov, D. O., 1 Sept 2018, In: DNA Repair. 69, p. 24-33 10 p.

    Research output: Contribution to journalArticlepeer-review

  31. Characterization of biochemical properties of an apurinic/apyrimidinic endonuclease from Helicobacter pylori

    Turgimbayeva, A., Abeldenov, S., Zharkov, D. O., Ishchenko, A. A., Ramankulov, Y., Saparbaev, M. & Khassenov, B., 15 Aug 2018, In: PLoS ONE. 13, 8, p. e0202232 26 p., e0202232.

    Research output: Contribution to journalArticlepeer-review

  32. Not only the active site: importance of remote interactions in the recognition of oxidative DNA lesions

    Zharkov, D., Jul 2018, In: FEBS Open Bio. 8, p. 139-140 2 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  33. Variable termination sites of DNA polymerases encountering a DNA–protein cross-link

    Yudkina, A. V., Dvornikova, A. P. & Zharkov, D. O., 1 Jun 2018, In: PLoS ONE. 13, 6, p. e0198480 17 p., 0198480.

    Research output: Contribution to journalArticlepeer-review

  34. Альтернативные доноры генетической информации при генной коррекции: олигонуклеотиды и РНК

    Торгашева, Н. А. & Жарков, Д. О., 2018, Редактирование генов и геномов. Новосибирск: ФГУП "Издательство СО РАН", Vol. 1. p. 295-316 22 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

  35. Редактирование эпигенетических меток ДНК

    Петрова, Д. В., Жарков, Д. О. & Грин, И. Р., 2018, Редактирование генов и геномов. Новосибирск: ФГУП "Издательство СО РАН", Vol. 1. p. 317-353 37 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

  36. Структурные основы специфичности белка Cas9

    Вохтанцев, И. П., Ким, Д. В. & Жарков, Д. О., 2018, Редактирование генов и геномов. Новосибирск: ФГУП "Издательство СО РАН", Vol. 1. p. 177-198 22 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

  37. Узнавание и процессинг двуцепочечных разрывов в клетках бактерий и эукариот

    Мечетин, Г. В. & Жарков, Д. О., 2018, Редактирование генов и геномов. Новосибирск: ФГУП "Издательство СО РАН", Vol. 1. p. 267-293 27 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

  38. 2017
  39. Global DNA dynamics of 8-oxoguanine repair by human OGG1 revealed by stopped-flow kinetics and molecular dynamics simulation

    Lukina, M. V., Koval, V. V., Lomzov, A. A., Zharkov, D. O. & Fedorova, O. S., 1 Oct 2017, In: Molecular BioSystems. 13, 10, p. 1954-1966 13 p.

    Research output: Contribution to journalArticlepeer-review

  40. DNA repair in transcription intermediates by helix-two-turn-helix family DNA glycosylases

    Makasheva, K. & Zharkov, D., Sept 2017, In: FEBS Journal. 284, p. 114-114 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  41. Enzyme processivity as a drug target: The case of poxvirus uracil-DNA glycosylase

    Zharkov, D., Sept 2017, In: FEBS Journal. 284, p. 11-11 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  42. Dynamic recognition in protein-DNA complexes

    Simmerling, C., Grollman, A. & Zharkov, D., 20 Aug 2017, In: Abstracts of papers of the american chemical society. 254, 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  43. Influence of pyridine-like ligands on the structure, photochemical and biological properties of nitro-nitrosyl ruthenium complexes

    Kostin, G. A., Mikhailov, A. A., Kuratieva, N. V., Pischur, D. P., Zharkov, D. O. & Grin, I. R., 7 Aug 2017, In: New Journal of Chemistry. 41, 15, p. 7758-7765 8 p.

    Research output: Contribution to journalArticlepeer-review

  44. Aberrant base excision repair pathway of oxidatively damaged DNA: Implications for degenerative diseases

    Talhaoui, I., Matkarimov, B. T., Tchenio, T., Zharkov, D. O. & Saparbaev, M. K., 1 Jun 2017, In: Free Radical Biology and Medicine. 107, p. 266-277 12 p.

    Research output: Contribution to journalReview articlepeer-review

  45. Molecular dynamics simulation of the opposite-base preference and interactions in the active site of formamidopyrimidine-DNA glycosylase

    Popov, A. V., Endutkin, A. V., Vorobjev, Y. N. & Zharkov, D. O., 8 May 2017, In: BMC Structural Biology. 17, 1, p. 1-19 19 p., 5.

    Research output: Contribution to journalArticlepeer-review

  46. Recognition but no repair of abasic site in single-stranded DNA by human ribosomal uS3 protein residing within intact 40S subunit

    Grosheva, A. S., Zharkov, D. O., Stahl, J., Gopanenko, A. V., Tupikin, A. E., Kabilov, M. R., Graifer, D. M. & Karpova, G. G., 20 Apr 2017, In: Nucleic Acids Research. 45, 7, p. 3833-3843 11 p.

    Research output: Contribution to journalArticlepeer-review

  47. DNA Deformation-Coupled Recognition of 8-Oxoguanine: Conformational Kinetic Gating in Human DNA Glycosylase

    Li, H., Endutkin, A. V., Bergonzo, C., Fu, L., Grollman, A., Zharkov, D. O. & Simmerling, C., 22 Feb 2017, In: Journal of the American Chemical Society. 139, 7, p. 2682-2692 11 p.

    Research output: Contribution to journalArticlepeer-review

  48. Solid/gas biocatalysis

    Kulishova, L. M. & Zharkov, D. O., 1 Feb 2017, In: Biochemistry (Moscow). 82, 2, p. 95-105 11 p.

    Research output: Contribution to journalArticlepeer-review

  49. Correlated target search by uracil-DNA glycosylase in the presence of bulky adducts and DNA-binding ligands

    Mechetin, G. V., Dyatlova, E. A., Sinyakov, A. N., Ryabinin, V. A., Vorobjev, P. E. & Zharkov, D. O., 1 Jan 2017, In: Russian Journal of Bioorganic Chemistry. 43, 1, p. 23-28 6 p.

    Research output: Contribution to journalArticlepeer-review

  50. Dihydroartemisinin counteracts fibrotic portal hypertension via farnesoid X receptor-dependent inhibition of hepatic stellate cell contraction

    Endutkin, A., Popov, A., Yudkina, A., Makasheva, K., Afonnikov, D., Simmerling, C. & Zharkov, D., 1 Jan 2017, In: FEBS Journal. 284, 1, p. 114-133 20 p.

    Research output: Contribution to journalArticlepeer-review

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