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  1. 2024

  2. Genomic background sequences systematically outperform synthetic ones in de novo motif discovery for ChIP-seq data

    Raditsa, V. V., Tsukanov, A. V., Bogomolov, A. G. & Levitsky, V. G., 1 Sept 2024, In: NAR Genomics and Bioinformatics. 6, 3, 15 p., qae090.

    Research output: Contribution to journal › Article › peer-review

  3. 2022

  4. CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

    Lavrekha, V. V., Levitsky, V. G., Tsukanov, A. V., Bogomolov, A. G., Grigorovich, D. A., Omelyanchuk, N., Ubogoeva, E. V., Zemlyanskaya, E. V. & Mironova, V., 18 Aug 2022, In: Frontiers in Plant Science. 13, 942710.

    Research output: Contribution to journal › Article › peer-review

  5. Web-MCOT Server for Motif Co-Occurrence Search in ChIP-Seq Data

    Levitsky, V. G., Mukhin, A. M., Oshchepkov, D. Y., Zemlyanskaya, E. V. & Lashin, S. A., 11 Aug 2022, In: International Journal of Molecular Sciences. 23, 16, 8981.

    Research output: Contribution to journal › Article › peer-review

  6. Motif models proposing independent and interdependent impacts of nucleotides are related to high and low affinity transcription factor binding sites in Arabidopsis

    Tsukanov, A. V., Mironova, V. V. & Levitsky, V. G., 28 Jul 2022, In: Frontiers in Plant Science. 13, 938545.

    Research output: Contribution to journal › Article › peer-review

  7. 2021

  8. Transcriptional regulation in plants: Using omics data to crack the cis-regulatory code

    Zemlyanskaya, E. V., Dolgikh, V. A., Levitsky, V. G. & Mironova, V., Oct 2021, In: Current Opinion in Plant Biology. 63, p. 102058 102058.

    Research output: Contribution to journal › Review article › peer-review

  9. Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures

    Shi, D., Jouannet, V., Agustí, J., Kaul, V., Levitsky, V., Sanchez, P., Mironova, V. V. & Greb, T., 17 Apr 2021, In: The Plant cell. 33, 2, p. 200-223 24 p.

    Research output: Contribution to journal › Article › peer-review

  10. Метод поиска структурной гетерогенности сайтов связывания транскрипционных факторов с использованием альтернативных de novo моделей на примере FOXA2

    Tsukanov, A. V., Levitsky, V. G. & Merkulova, T. I., Feb 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 7-17 11 p., 1.

    Research output: Contribution to journal › Article › peer-review

  11. 2020

  12. Nucleosome positioning around transcription start site correlates with gene expression only for active chromatin state in drosophila interphase chromosomes

    Levitsky, V. G., Zykova, T. Y., Moshkin, Y. M. & Zhimulev, I. F., 1 Dec 2020, In: International Journal of Molecular Sciences. 21, 23, p. 1-10 10 p., 9282.

    Research output: Contribution to journal › Article › peer-review

  13. Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis

    Freire-Rios, A., Tanaka, K., Crespo, I., Van der Wijk, E., Sizentsova, Y., Levitsky, V., Lindhoud, S., Fontana, M., Hohlbein, J., Roeland Boer, D., Mironova, V. & Weijers, D., 29 Sept 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 39, p. 24557-24566 10 p.

    Research output: Contribution to journal › Article › peer-review

  14. Asymmetric conservation within pairs of co-occurred motifs mediates weak direct binding of transcription factors in chip-seq data

    Levitsky, V., Oshchepkov, D., Zemlyanskaya, E. & Merkulova, T., 21 Aug 2020, In: International Journal of Molecular Sciences. 21, 17, p. 1-22 22 p., 6023.

    Research output: Contribution to journal › Article › peer-review

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