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  1. 2025

  2. Asymmetry of Motif Conservation Within Their Homotypic Pairs Distinguishes DNA-Binding Domains of Target Transcription Factors in ChIP-Seq Data

    Levitsky, V. G., Raditsa, V. V., Tsukanov, A. V., Mukhin, A. M., Zhimulev, I. F. & Merkulova, T. I., 4 Jan 2025, In: International Journal of Molecular Sciences. 26, 1, 386.

    Research output: Contribution to journal › Article › peer-review

  3. 2024

  4. Genomic background sequences systematically outperform synthetic ones in de novo motif discovery for ChIP-seq data

    Raditsa, V. V., Tsukanov, A. V., Bogomolov, A. G. & Levitsky, V. G., 1 Sept 2024, In: NAR Genomics and Bioinformatics. 6, 3, 15 p., qae090.

    Research output: Contribution to journal › Article › peer-review

  5. MetArea: a software package for analysis of the mutually exclusive occurrence in pairs of motifs of transcription factor binding sites based on ChIP-seq data

    Levitsky, V. G., Tsukanov, A. V. & Merkulova, T. I., 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 822-833 12 p.

    Research output: Contribution to journal › Article › peer-review

  6. 2022

  7. CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

    Lavrekha, V. V., Levitsky, V. G., Tsukanov, A. V., Bogomolov, A. G., Grigorovich, D. A., Omelyanchuk, N., Ubogoeva, E. V., Zemlyanskaya, E. V. & Mironova, V., 18 Aug 2022, In: Frontiers in Plant Science. 13, 942710.

    Research output: Contribution to journal › Article › peer-review

  8. Web-MCOT Server for Motif Co-Occurrence Search in ChIP-Seq Data

    Levitsky, V. G., Mukhin, A. M., Oshchepkov, D. Y., Zemlyanskaya, E. V. & Lashin, S. A., 11 Aug 2022, In: International Journal of Molecular Sciences. 23, 16, 8981.

    Research output: Contribution to journal › Article › peer-review

  9. Motif models proposing independent and interdependent impacts of nucleotides are related to high and low affinity transcription factor binding sites in Arabidopsis

    Tsukanov, A. V., Mironova, V. V. & Levitsky, V. G., 28 Jul 2022, In: Frontiers in Plant Science. 13, 938545.

    Research output: Contribution to journal › Article › peer-review

  10. 2021

  11. Transcriptional regulation in plants: Using omics data to crack the cis-regulatory code

    Zemlyanskaya, E. V., Dolgikh, V. A., Levitsky, V. G. & Mironova, V., Oct 2021, In: Current Opinion in Plant Biology. 63, p. 102058 102058.

    Research output: Contribution to journal › Review article › peer-review

  12. Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures

    Shi, D., Jouannet, V., Agustí, J., Kaul, V., Levitsky, V., Sanchez, P., Mironova, V. V. & Greb, T., 17 Apr 2021, In: The Plant cell. 33, 2, p. 200-223 24 p.

    Research output: Contribution to journal › Article › peer-review

  13. Метод поиска структурной гетерогенности сайтов связывания транскрипционных факторов с использованием альтернативных de novo моделей на примере FOXA2

    Tsukanov, A. V., Levitsky, V. G. & Merkulova, T. I., Feb 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 7-17 11 p., 1.

    Research output: Contribution to journal › Article › peer-review

  14. 2020

  15. Nucleosome positioning around transcription start site correlates with gene expression only for active chromatin state in drosophila interphase chromosomes

    Levitsky, V. G., Zykova, T. Y., Moshkin, Y. M. & Zhimulev, I. F., 1 Dec 2020, In: International Journal of Molecular Sciences. 21, 23, p. 1-10 10 p., 9282.

    Research output: Contribution to journal › Article › peer-review

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