Exploring light scattering as a streamlined approach to cell system evaluation

Naumenko, M., Panfilov, M., Polivtsev, D., Laktionov, P., Kulemzin, S. & Moskalensky, A., Dec 2025, In: Journal of Quantitative Spectroscopy and Radiative Transfer. 347, 7 p., 109640.

Research output: Contribution to journal › Article › peer-review

Tissue distribution of OL9-116, a Tdp1 inhibitor based on usnic acid, is significantly altered in Lewis lung carcinoma-bearing mice compared to healthy animals

Okhina, A. A., Kornienko, T. E., Rogachev, A. D., Luzina, O. A., Popova, N. A., Nikolin, V. P., Zakharenko, A. L., Dyrkheeva, N. S., Pokrovsky, A. G., Salakhutdinov, N. F. & Lavrik, O. I., 15 Nov 2025, In: Journal of Pharmaceutical and Biomedical Analysis. 265, 8 p., 117054.

Research output: Contribution to journal › Article › peer-review

Direction and modality of transcription changes caused by TAD boundary disruption in Slc29a3/Unc5b locus depends on tissue-specific epigenetic context

Salnikov, P., Belokopytova, P., Yan, A., Viesná, E., Korablev, A., Serova, I., Lukyanchikova, V., Stepanchuk, Y., Torgunakov, N., Tikhomirov, S. & Fishman, V., 12 Aug 2025, In: Epigenetics & chromatin. 18, 1, 55.

Research output: Contribution to journal › Article › peer-review

DNA and Histone Modifications Identify a Putative Controlling Element (CE) on the X Chromosome of Sciara coprophila

Posukh, O. V., Shloma, V. V., Skrypnik, P. A., Maksimov, D. A., Antoshina, P. A., Kalashnikova, D. A., Nurislamov, A., Lukyanchikova, V. A., Torgunakov, N., Battulin, N. R., Fishman, V. S., Vyatkin, Y. V., Smelova, A. A., Romanov, S. E., Laktionov, P. P., Valishayev, D., Belyakin, S. N. & Singh, P. B., 12 Aug 2025, In: Cells. 14, 16, 16 p., 1243.

Research output: Contribution to journal › Article › peer-review

A genome-wide association study in 10,000 individuals links plasma N-glycome to liver disease and anti-inflammatory proteins

Sharapov, S., Timoshchuk, A., Zaytseva, O., Maslov, D. E., Soplenkova, A., Elgaeva, E. E., Tiys, E. S., Mangino, M., Wittenbecher, C., Karssen, L., Timofeeva, M., Nostaeva, A., Vuckovic, F., Trbojević-Akmačić, I., Štambuk, T., Feoktistova, S., Potapova, N. A., Voroshilova, V., Williams, F., Primorac, D., & 11 othersVan zundert, J., Georges, M., Suhre, K., Allegri, M., Chaturvedi, N., Dunlop, M., Schulze, M. B., Spector, T., Tsepilov, Y. A., Lauc, G. & Aulchenko, Y. S., 1 Jul 2025, In: Nature Communications. 16, 1, 17 p., 5525.

Research output: Contribution to journal › Article › peer-review

Correction: Kovner et al. Liver Fluke-Derived Molecules Accelerate Skin Repair Processes in a Mouse Model of Type 2 Diabetes Mellitus. Int. J. Mol. Sci. 2024, 25, 12002

Kovner, A., Kapushchak, Y., Zaparina, O., Ponomarev, D. V. & Pakharukova, M., 24 Jun 2025, In: International Journal of Molecular Sciences. 26, 13, 1 p., 6046.

Research output: Contribution to journal › Comment/debate › peer-review

Division of the Standard Set of Amino Acids into Groups According to Their Evolutionary Age

Efimov, V. M., Efimov, K. V. & Kovaleva, V. Y., 15 Jun 2025, In: Molecular Biology. 59, 2, p. 263-271 9 p.

Research output: Contribution to journal › Article › peer-review

Localization of Ribosomal DNA-Associated Retrotransposons Refines the Heterochromatin Map of the X Chromosome in Drosophila melanogaster

Kolesnikova, T. D., Veselova, O. V., Pokholkova, G. V., Schubert, V. & Klenov, M. S., 12 Jun 2025, (E-pub ahead of print) In: Cytogenetic and Genome Research. p. 1-17 17 p.

Research output: Contribution to journal › Article › peer-review

A comparison of approaches to studying relationships between lumbar spinal degeneration findings demonstrates advantages to interspace-level analyses over person-level analyses

Suri, P., Elgaeva, E., Jarvik, J., Rundell, S., Tsepilov, Y., Williams, F. & Heagerty, P., 10 Jun 2025, In: European Spine Journal.

Research output: Contribution to journal › Article › peer-review

Analysis by Minigene Assay of the Splicing Effect of a Novel Variant c.1545T>G in the SLC26A4 Gene Associated with Hearing Loss

Panina, E. A., Danilchenko, V. Y., Zytsar, M. V., Orishchenko, K. E. & Posukh, O. L., 10 Jun 2025, In: Russian Journal of Genetics. 61, 5, p. 602-607 6 p.

Research output: Contribution to journal › Article › peer-review

Author Correction: Wound healing approach based on excretory-secretory product and lysate of liver flukes (Scientific Reports, (2022), 12, 1, (21639), 10.1038/s41598-022-26275-y)

Kovner, A. V., Tarasenko, A. A., Zaparina, O., Tikhonova, O. V., Pakharukova, M. Y. & Mordvinov, V. A., 10 Jun 2025, In: Scientific Reports. 15, 1, p. 20041 3 p., 20041.

Research output: Contribution to journal › Article › peer-review

Corrigendum to “Characteristics of liver fibrosis associated with chronic Opisthorchis felineus infection in Syrian hamsters and humans” [Experimental and Molecular Pathology 110 (2019) 104274] (Experimental and Molecular Pathology (2019) 110, (S0014480018305781), (10.1016/j.yexmp.2019.104274))

Kovner, A. V., Пахарукова, М. Ю., Maksimova, G. A. & Mordvinov, V. A., 9 Jun 2025, In: Experimental and Molecular Pathology. p. 104975 104975.

Research output: Contribution to journal › Comment/debate › peer-review

Определяющая роль гетерохроматина в фенотипическом проявлении инверсии In(1)sc8, разрывающей achaete-scute комплекс Drosophila melanogaster: The key role of heterochromatin in the phenotypic manifestation of the In(1)sc8 inversion disrupting the achaete-scute complex in Drosophila melanogaster

Kolesnikova, T. D., Balantaeva, M. N., Pokholkova, G. V., Antonenko, O. V. & Zhimulev, I. F., Jun 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 3, p. 414-422 9 p.

Research output: Contribution to journal › Article › peer-review

От цитогенетики к протеогеномике: новые горизонты в исследовании анеуплодий

Zadesenets, K. S. & Rubtsov, N. B., Jun 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 3, p. 335-348 14 p.

Research output: Contribution to journal › Article › peer-review

A Novel Framework for the Design of Minimized Epigenetic Clocks Using the Analysis of DNA Methylation Heterogeneity

Romanov, S. E., Karetnikov, D. I., Kalashnikova, D. A., Polivcev, D. E., Osipov, Y. A., Maksimov, D. A., Antoshina, P. A., Shloma, V. V., Samoilova, E. M., Ivanova, A. A., Karimov, R. F., Tkalin, A. N., Shevchenko, A. A., Kalsin, V. A., Baklaushev, V. P. & Laktionov, P. P., 23 May 2025, In: International Journal of Molecular Sciences. 26, 11, 5051.

Research output: Contribution to journal › Article › peer-review

Analysis of SDC2 and SEPT9 promoters methylation in plasma cfDNA to detect colorectal and precancerous lesions

Borobova, V., Aksamentov, A., Sazonov, D., Baklaushev, V., Indinok, D., Valuyskikh, E., Valuiskikh, A., Oleynikova, N., Laktionov, P. & Kovalenko, S., 21 May 2025, In: Exploration of Medicine. 6, 1001322.

Research output: Contribution to journal › Article › peer-review

Combining chromosome conformation capture and exome sequencing for simultaneous detection of structural and single-nucleotide variants

Gridina, M., Lagunov, T., Belokopytova, P., Torgunakov, N., Nuriddinov, M., Nurislamov, A., Nazarenko, L. P., Kashevarova, A. A., Lopatkina, M. E., Vasilyev, S., Zuev, A., Belyaeva, E. O., Salyukova, O. A., Cheremnykh, A. D., Sukhanova, N. N., Minzhenkova, M. E., Markova, Z. G., Demina, N. A., Stepanchuk, Y., Khabarova, A., & 22 othersYan, A., Valeev, E., Koksharova, G., Grigor’eva, E. V., Kokh, N., Lukjanova, T., Maximova, Y., Musatova, E., Shabanova, E., Kechin, A., Khrapov, E., Boyarskih, U., Ryzhkova, O., Suntsova, M., Matrosova, A., Karoli, M., Manakhov, A., Filipenko, M., Rogaev, E., Shilova, N. V., Lebedev, I. N. & Fishman, V., 7 May 2025, In: Genome Medicine. 17, 1, p. 47 47.

Research output: Contribution to journal › Article › peer-review

The synergistic antitumor effect of Karanahan technology and in situ vaccination using anti-OX40 antibodies

Ruzanova, V., Proskurina, A., Ritter, G., Dolgova, E., Oshikhmina, S., Kirikovich, S., Levites, E., Efremov, Y., Taranov, O., Ostanin, A., Chernykh, E., Kolchanov, N. & Bogachev, S., 18 Apr 2025, In: Oncology research. 33, 5, p. 1229-1248 20 p.

Research output: Contribution to journal › Article › peer-review

Chromosomal polymorphism in natural populations of Chironomus borokensis Kerkis, Filippova, Shobanov, Gunderina et Kiknadze, 1988 (Diptera, Chironomidae)

Golygina, V. V., Broshkov, A. D. & Ermolaeva, O. V., 15 Apr 2025, In: Comparative Cytogenetics. 19, p. 51-74 24 p.

Research output: Contribution to journal › Article › peer-review

Decomposing the genetic background of chronic back pain

Elgaeva, E. E., Zorkoltseva, I. V., Nostaeva, A. V., Verzun, D. A., Tiys, E. S., Timoshchuk, A. N., Kirichenko, A. V., Svishcheva, G. R., Freidin, M. B., Williams, F. M. K., Suri, P., Aulchenko, Y. S., Axenovich, T. I. & Tsepilov, Y. A., 15 Apr 2025, In: Human Molecular Genetics. 34, 8, p. 711-725 15 p.

Research output: Contribution to journal › Article › peer-review

A Mendelian randomization study finds no evidence for causal effects of C-reactive protein on chronic pain conditions

Suri, P., Tsepilov, Y. A., Elgaeva, E. E., Williams, F. M. K., Freidin, M. B. & Stanaway, I. B., 1 Apr 2025, In: Pain medicine (Malden, Mass.). 26, 4, p. 222-224 3 p.

Research output: Contribution to journal › Article › peer-review

IgA nephropathy is associated with Opisthorchis felineus liver fluke infection: Retrospective 5-year analysis of human kidney samples

Kovner, A., Kapushchak, Y., Hadieva, E., Persidskij, M. & Pakharukova, M., 2 Feb 2025, In: Tropical Medicine and International Health. 30, 4, p. 292-302 11 p.

Research output: Contribution to journal › Article › peer-review

Transcriptome analysis reveals significant discrepancies between two in vitro models of host-trematode interaction

Lishai, E. A., Ponomarev, D. V., Zaparina, O. G. & Pakharukova, M. Y., 30 Jan 2025, In: Acta Tropica. 262, p. 107534 107534.

Research output: Contribution to journal › Article › peer-review

Ad6-Based GM-CSF Expressing Vector Displays Oncolytic and Immunostimulatory Effects in an Immunocompetent Syrian Hamster Model of Cholangiocarcinoma

Zabelina, D. S., Osipov, I. D., Maslov, D. E., Kovner, A. V., Vasikhovskaia, V. A., Demina, D. S., Romanov, S. E., Shishkina, E. V., Davydova, J., Netesov, S. V. & Romanenko, M. V., 24 Jan 2025, In: Viruses. 17, 2, 162.

Research output: Contribution to journal › Article › peer-review

Targeted correction of megabase-scale CNTN6 duplication in induced pluripotent stem cells and impacts on gene expression

Gridina, M., Orlova, P. & Serov, O., 20 Jan 2025, In: PeerJ. 13, 1, e18567.

Research output: Contribution to journal › Article › peer-review

Ultrastructural organization of the liver of rat pups in early postnatal ontogenesis when pregnant and lactating rats are kept on a low-protein diet

Pershina, E. G., Morozova, K. N. & Bgatova, N. P., 2 Jan 2025, In: Ultrastructural Pathology. 49, 1, p. 93-107 15 p.

Research output: Contribution to journal › Article › peer-review

The association of lumbar intervertebral disc degeneration with low back pain is modified by underlying genetic propensity to pain

Suri, P., Naeini, M. K., Heagerty, P. J., Freidin, M. B., Smith, I. G., Elgaeva, E. E., Compte, R., Tsepilov, Y. A. & Williams, F. M. K., Jan 2025, In: Spine Journal. 25, 1, p. 8-17 10 p.

Research output: Contribution to journal › Article › peer-review

Molecular phylogenetic analysis and taxonomy of the Palearctic Pamphagidae grasshoppers (Orthoptera, Acridoidea) based on DNA markers

Sukhikh, I., Bugrov, A., Chobanov, D., Fet, V., Biryukov, M. & Blinov, A., 2025, In: Insect Systematics and Evolution. 13 p.

Research output: Contribution to journal › Article › peer-review

Studying concatenation of the Cas9-cleaved transgenes using barcodes

Smirnov, A. V., Korablev, A. N., Serova, I. A., Yunusova, A. M., Muravyova, A. A., Valeev, E. S. & Battulin, N. R., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 1, p. 26-34 9 p., 3.

Research output: Contribution to journal › Article › peer-review

The EGFR Signaling Pathway Is Involved in the Biliary Intraepithelial Neoplasia Associated with Liver Fluke Infection

Ponomarev, D. V., Zaparina, O., Kovner, A., Hadieva, E., Persidskij, M. & Pakharukova, M., 2025, In: Pathogens. 14, 7, 16 p., 620.

Research output: Contribution to journal › Article › peer-review

Временные изменения уровня эмоциональных и поведенческих проблем детей по данным педагогов в 1999–2021 гг.

Slobodskaya, H. R., Kornienko, O. S., Petrenko, E. N., Varshal, A. V., Kozlova, E. A. & Safronova, M. V., 2025, In: Психиатрия. 23, 1, p. 18-27 10 p.

Research output: Contribution to journal › Article › peer-review

Направленное редактирование геномов индуцированных плюрипотентных стволовых клеток человека как инструмент функционального анализа генетических вариантов

Medvedev, S. P., Akhmerova, V. I., Nadtochy, J. A., Grigor’eva, E. V., Pavlova, S. V. & Zakian, S. M., 2025, In: Vestnik Tomskogo Gosudarstvennogo Universiteta, Biologiya. 69, p. 113-121 9 p.

Research output: Contribution to journal › Article › peer-review

Changes in the Phenotype and Metabolism of Peritoneal Macrophages in Mucin-2 Knockout Mice and Partial Restoration of Their Functions In Vitro After L-Fucose Treatment

Arzhanova, E. L., Makusheva, Y., Pershina, E. G., Medvedeva, S. S. & Litvinova, E. A., 24 Dec 2024, In: International Journal of Molecular Sciences. 26, 1, 113.

Research output: Contribution to journal › Article › peer-review

Thraustochytrids: Evolution, Ultrastructure, Biotechnology, and Modeling

Menzorov, A. G., Iukhtanov, D. A., Naumenko, L. G., Bobrovskikh, A. V., Zubairova, U. S., Morozova, K. N. & Doroshkov, A. V., 7 Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 13172.

Research output: Contribution to journal › Review article › peer-review

Comparative liver transcriptome analysis in hamsters infected with food-borne trematodes Opisthorchis felineus, Opisthorchis viverrini, or Clonorchis sinensis

Лишай, Е. А., Запарина, О. Г., Капущак, Я. К., Sripa, B., Hong, S-J., Cheng, G. & Пахарукова, М. Ю., 1 Dec 2024, In: PLoS neglected tropical diseases. 18, 12, p. e0012685 24 p., e0012685.

Research output: Contribution to journal › Article › peer-review

Accumulation of Anthocyanin in the Aleurone of Barley Grains by Targeted Restoration of the MYC2 Gene

Egorova, A. A., Zykova, T. E., Hertig, C. W., Hoffie, I., Morozov, S. V., Chernyak, E. I., Rogachev, A. D., Korotkova, A. M., Vikhorev, A. V., Vasiliev, G. V., Shoeva, O. Y., Kumlehn, J., Gerasimova, S. V. & Khlestkina, E. K., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12705.

Research output: Contribution to journal › Article › peer-review

Auxin Triggers AHR Pathway Activation in the Auxin-Inducible Degron System in Mammalian Cells

Yunusova, A., Zadorozhnyi, D. & Battulin, N., Dec 2024, In: Biochemistry (Moscow). 89, 12, p. 2214-2226 13 p., 10.

Research output: Contribution to journal › Article › peer-review

Species-specific renal and liver responses during infection with food-borne trematodes Opisthorchis felineus, Opisthorchis viverrini, or Clonorchis sinensis

Zaparina, O. G., Kapushchak, Y. K., Lishai, E. A., Hong, S. J., Sripa, B. & Pakharukova, M. Y., Dec 2024, In: PLoS ONE. 19, 12, 19 p., e0311481.

Research output: Contribution to journal › Article › peer-review

Structural Analysis of the LZTFL1 Protein by Principal Component Analysis (PCA-seq)

Khegai, I. I., Yu, X. & Efimov, V. M., Dec 2024, In: Russian Journal of Bioorganic Chemistry. 50, 6, p. 2611-2617 7 p.

Research output: Contribution to journal › Article › peer-review

Structural variants in the Epb41l4a locus: TAD disruption and Nrep gene misregulation as hypothetical drivers of neurodevelopmental outcomes

Salnikov, P., Korablev, A., Serova, I., Belokopytova, P., Yan, A., Stepanchuk, Y., Tikhomirov, S. & Fishman, V., Dec 2024, In: Scientific Reports. 14, 1, 8 p., 5288.

Research output: Contribution to journal › Article › peer-review

TAD border deletion at the Kit locus causes tissue-specific ectopic activation of a neighboring gene

Kabirova, E., Ryzhkova, A., Lukyanchikova, V., Khabarova, A., Korablev, A., Shnaider, T., Nuriddinov, M., Belokopytova, P., Smirnov, A., Khotskin, N. V., Kontsevaya, G., Serova, I. & Battulin, N., Dec 2024, In: Nature Communications. 15, 1, 16 p., 4521.

Research output: Contribution to journal › Article › peer-review

Loop Extrusion Machinery Impairments in Models and Disease

Ryzhkova, A., Maltseva, E., Battulin, N. & Kabirova, E., 17 Nov 2024, In: Cells. 13, 22, 1896.

Research output: Contribution to journal › Review article › peer-review

Liver Fluke-Derived Molecules Accelerate Skin Repair Processes in a Mouse Model of Type 2 Diabetes Mellitus

Kovner, A., Kapushchak, Y., Zaparina, O., Ponomarev, D. & Pakharukova, M., 8 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12002.

Research output: Contribution to journal › Article › peer-review