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  1. 2013

  2. СПОСОБ СТИМУЛЯЦИИ ЭНДОГЕННОЙ ПРОДУКЦИИ ЦИТОКИНОВ И ГЕМОПОЭТИЧЕСКИХ ФАКТОРОВ

    Гвоздева, Т. С., Долгова, Е. В., Алямкина, Е. А., Орищенко, К. Е., Проскурина, А. С., Рогачев, В. А., Николин, В. П., Попова, Н. А., Ефремов, Я. Р., Леплина, О. Ю., Останин, А. А., Черных, Е. Р., Вараксин, Н. А., Рябичева, Т. Г., Загребельный, С. Н., Пономаренко, Д. М., Дворниченко, В. В., Сидоров, С. В., Богачев, С. С. & Шурдов, М. А., 20 Nov 2013, IPC No. A61K48/00, A61P43/00, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2498821, Priority date 10 Apr 2012, Priority No. 2012114023

    Research output: Patent › Patent for invention

  3. 2016

  4. Mechanical behavior of cells within a cell-based model of wheat leaf growth

    Zubairova, U., Nikolaev, S., Penenko, A., Podkolodnyy, N., Golushko, S., Afonnikov, D. & Kolchanov, N., 15 Dec 2016, In: Frontiers in Plant Science. 7, DECEMBER2016, 15 p., 1878.

    Research output: Contribution to journal › Article › peer-review

  5. 2017

  6. Achievements and prospects of applying high-throughput sequencing techniques to potato genetics and breeding

    Bykova, I. V., Shmakov, N. A., Afonnikov, D. A., Kochetov, A. V. & Khlestkina, E. K., 1 Jan 2017, In: Вавиловский журнал генетики и селекции. 21, 1, p. 96-103 8 p.

    Research output: Contribution to journal › Article › peer-review

  7. Dihydroartemisinin counteracts fibrotic portal hypertension via farnesoid X receptor-dependent inhibition of hepatic stellate cell contraction

    Endutkin, A., Popov, A., Yudkina, A., Makasheva, K., Afonnikov, D., Simmerling, C. & Zharkov, D., 1 Jan 2017, In: FEBS Journal. 284, 1, p. 114-133 20 p.

    Research output: Contribution to journal › Article › peer-review

  8. Modern opportunities for improving quality of bakery products via realizing the bread wheat genetic potential-by-environment interactions (review)

    Khlestkina, E. K., Zhuravleva, E. V., Pshenichnikova, T. A., Usenko, N. I., Morozova, E. V., Osipova, S. V., Permyakova, M. D., Afonnikov, D. A. & Otmakhova, Y. S., 1 Jan 2017, In: Sel'skokhozyaistvennaya Biologiya. 52, 3, p. 501-514 14 p.

    Research output: Contribution to journal › Article › peer-review

  9. Online resources on gene networks containing human and animal data

    Ignatieva, E. V., Afonnikov, D. A. & Kolchanov, N. A., 1 Jan 2017, In: Вавиловский журнал генетики и селекции. 21, 8, p. 895-902 8 p.

    Research output: Contribution to journal › Article › peer-review

  10. Evaluation of the SeedCounter, a mobile application for grain phenotyping

    Komyshev, E., Genaev, M. & Afonnikov, D., 4 Jan 2017, In: Frontiers in Plant Science. 7, p. 1990 9 p., 1990.

    Research output: Contribution to journal › Article › peer-review

  11. The interplay of chromatin landscape and DNA-binding context suggests distinct modes of EIN3 regulation in Arabidopsis thaliana

    Zemlyanskaya, E. V., Levitsky, V. G., Oshchepkov, D. Y., Grosse, I. & Mironova, V. V., 9 Jan 2017, In: Frontiers in Plant Science. 7, 9 p., 2044.

    Research output: Contribution to journal › Article › peer-review

  12. Orthoscape: A cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles

    Mustafin, Z. S., Lashin, S. A., Matushkin, Y. G., Gunbin, K. V. & Afonnikov, D. A., 27 Jan 2017, In: Bioinformatics. 18, Suppl 1, p. 1-9 9 p., 28.

    Research output: Contribution to journal › Article › peer-review

  13. Genome editing system CRISPR/CAS9 and peculiarities of its application in monocots

    Gerasimova, S. V., Khlestkina, E. K., Kochetov, A. V. & Shumny, V. K., 1 Mar 2017, In: Russian Journal of Plant Physiology. 64, 2, p. 141-155 15 p.

    Research output: Contribution to journal › Review article › peer-review

  14. Status and prospects of marker-assisted and genomic plant breeding

    Kolchanov, N. A., Kochetov, A. V., Salina, E. A., Pershina, L. A., Khlestkina, E. K. & Shumny, V. K., 1 Mar 2017, In: Herald of the Russian Academy of Sciences. 87, 2, p. 125-131 7 p.

    Research output: Contribution to journal › Article › peer-review

  15. The Systems Biology of Auxin in Developing Embryos

    Mironova, V., Teale, W., Shahriari, M., Dawson, J. & Palme, K., 1 Mar 2017, In: Trends in Plant Science. 22, 3, p. 225-235 11 p.

    Research output: Contribution to journal › Review article › peer-review

  16. AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs

    Kochetov, A. V., Allmer, J., Klimenko, A. I., Zuraev, B. S., Matushkin, Y. G., Lashin, S. A. & Hancock, J., 15 Mar 2017, In: Bioinformatics. 33, 6, p. 923-925 3 p.

    Research output: Contribution to journal › Article › peer-review

  17. Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions

    Medvedev, K. E., Kolchanov, N. A. & Afonnikov, D. A., 1 Apr 2017, In: Journal of Bioinformatics and Computational Biology. 15, 2, p. 1650036 18 p., 1650036.

    Research output: Contribution to journal › Article › peer-review

  18. Protein and genetic composition of four chromatin types in Drosophila melanogaster cell lines

    Boldyreva, L. V., Goncharov, F. P., Demakova, O. V., Zykova, T. Y., Levitsky, V. G., Kolesnikov, N. N., Pindyurin, A. V., Semeshin, V. F. & Zhimulev, I. F., 1 Apr 2017, In: Current Genomics. 18, 2, p. 214-226 13 p.

    Research output: Contribution to journal › Article › peer-review

  19. Mechanisms regulating ethylene signal transduction in plants

    Zemlyanskaya, E. V., Omelyanchuk, N. A., Ermakov, A. A. & Mironova, V. V., 1 May 2017, In: Russian Journal of Genetics: Applied Research. 7, 3, p. 335-344 10 p.

    Research output: Contribution to journal › Article › peer-review

  20. Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots

    Omelyanchuk, N. A., Wiebe, D. S., Novikova, D. D., Levitsky, V. G., Klimova, N., Gorelova, V., Weinholdt, C., Vasiliev, G. V., Zemlyanskaya, E. V., Kolchanov, N. A., Kochetov, A. V., Grosse, I. & Mironova, V. V., 30 May 2017, In: Scientific Reports. 7, 1, p. 2489 11 p., 2489.

    Research output: Contribution to journal › Article › peer-review

  21. Mutational signatures and mutable motifs in cancer genomes

    Rogozin, I. B., Pavlov, Y. I., Goncearenco, A., De, S., Lada, A. G., Poliakov, E., Panchenko, A. R. & Cooper, D. N., 30 May 2017, In: Briefings in Bioinformatics. 19, 6, p. 1085-1101 17 p.

    Research output: Contribution to journal › Article › peer-review

  22. Systems biology analysis of the WOX5 gene and its functions in the root stem cell niche

    Oshchepkova, E. A., Omelyanchuk, N. A., Savina, M. S., Pasternak, T., Kolchanov, N. A. & Zemlyanskaya, E. V., 1 Jun 2017, In: Russian Journal of Genetics: Applied Research. 7, 4, p. 404-420 17 p.

    Research output: Contribution to journal › Article › peer-review

  23. A Sacrifice-for-Survival Mechanism Protects Root Stem Cell Niche from Chilling Stress

    Hong, J. H., Savina, M., Du, J., Devendran, A., Kannivadi Ramakanth, K., Tian, X., Sim, W. S., Mironova, V. V. & Xu, J., 29 Jun 2017, In: Cell. 170, 1, p. 102-113.e14 11 p.

    Research output: Contribution to journal › Article › peer-review

  24. Diversity of leaf pubescence in bread wheat and relative species

    Pshenichnikova, T. A., Doroshkov, A. V., Simonov, A. V., Afonnikov, D. A. & Börner, A., 1 Oct 2017, In: Genetic Resources and Crop Evolution. 64, 7, p. 1761-1773 13 p.

    Research output: Contribution to journal › Article › peer-review

  25. Achievements and prospects of applying high-throughput sequencing techniques to potato genetics and breeding

    Bykova, I. V., Shmakov, N. A., Afonnikov, D. A., Kochetov, A. V. & Khlestkina, E. K., 1 Nov 2017, In: Russian Journal of Genetics: Applied Research. 7, 7, p. 736-743 8 p.

    Research output: Contribution to journal › Article › peer-review

  26. Metabolic pathways and genes identified by RNA-seq analysis of barley near-isogenic lines differing by allelic state of the Black lemma and pericarp (Blp) gene

    Glagoleva, A. Y., Shmakov, N. A., Shoeva, O. Y., Vasiliev, G. V., Shatskaya, N. V., Börner, A., Afonnikov, D. A. & Khlestkina, E. K., 14 Nov 2017, In: BMC Plant Biology. 17, Suppl 1, p. 182 9 p., 182.

    Research output: Contribution to journal › Article › peer-review

  27. 3D analysis of mitosis distribution highlights the longitudinal zonation and diarch symmetry in proliferation activity of the Arabidopsis thaliana root meristem

    Lavrekha, V. V., Pasternak, T., Ivanov, V. B., Palme, K. & Mironova, V. V., 1 Dec 2017, In: Plant Journal. 92, 5, p. 834-845 12 p.

    Research output: Contribution to journal › Article › peer-review

  28. A database on genes increasing the resistance of wheat and its related species against pathogenic fungi

    Smirnova, O. G. & Kochetov, A. V., 1 Dec 2017, In: Russian Journal of Genetics: Applied Research. 7, 8, p. 816-821 6 p.

    Research output: Contribution to journal › Article › peer-review

  29. Differential expression of NBS-LRR-encoding genes in the root transcriptomes of two Solanum phureja genotypes with contrasting resistance to Globodera rostochiensis

    Kochetov, A. V., Glagoleva, A. Y., Strygina, K. V., Khlestkina, E. K., Gerasimova, S. V., Ibragimova, S. M., Shatskaya, N. V., Vasilyev, G. V., Afonnikov, D. A., Shmakov, N. A., Antonova, O. Y., Gavrilenko, T. A., Alpatyeva, N. V., Khiutti, A. & Afanasenko, O. S., 28 Dec 2017, In: BMC Plant Biology. 17, Suppl 2, p. 251 10 p., 251.

    Research output: Contribution to journal › Article › peer-review

  30. 2018

  31. An integrated information system on bioresource collections of the FASO of Russia

    Lashin, S. A., Afonnikov, D. A., Genaev, M. A., Kazantsev, F. V., Komyshev, E. G., Oschepkova, E. A., Petrov, A. V., Rasskazov, D. A., Smirnova, A. A. & Kolchanov, N. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 3, p. 386-393 8 p.

    Research output: Contribution to journal › Article › peer-review

  32. Informational resources on potato germplasm collections

    Afonnikov, D. A., Totsky, I. V. & Stasevski, Z., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 115-121 7 p.

    Research output: Contribution to journal › Review article › peer-review

  33. Information system on microbial collections as a part of bioresource collections portal for Russia’s FASO organizations: A working protocol

    Kazantsev, F. V., Smirnova, A. A., Rozanov, A. S., Uvarova, Y. E., Afonnikov, D. A., Peltek, S. E. & Lashin, S. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 2, p. 279-284 6 p.

    Research output: Contribution to journal › Article › peer-review

  34. Leaf hairiness in potato Solanum tuberosum: Morphology, function and methods of analysis

    Doroshkov, A. V. & Afonnikov, D. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 46-53 8 p.

    Research output: Contribution to journal › Review article › peer-review

  35. SpikeDroidDB: An information system for annotation of morphometric characteristics of wheat spike

    Genaev, M. A., Komyshev, E. G., Hao, F., Koval, V. S., Goncharov, N. P. & Afonnikov, D. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 132-140 9 p.

    Research output: Contribution to journal › Article › peer-review

  36. The morphogenic potential of Siberian potato cultivars in tissue cultures

    Ibragimova, S. M., Romanova, A. V., Myzgina, G. K. & Kochetov, A. V., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 3, p. 316-320 5 p.

    Research output: Contribution to journal › Article › peer-review

  37. High temperature and pressure influence the interdomain orientation of Nip7 proteins from P. abyssi and P. furiosus: MD simulations

    Medvedev, K. E., Kolchanov, N. A. & Afonnikov, D. A., 2 Jan 2018, In: Journal of Biomolecular Structure and Dynamics. 36, 1, p. 68-82 15 p.

    Research output: Contribution to journal › Article › peer-review

  38. MAMMOTh: A new database for curated mathematical models of biomolecular systems

    Kazantsev, F., Akberdin, I., Lashin, S., Ree, N., Timonov, V., Ratushny, A., Khlebodarova, T. & Likhoshvai, V., 1 Feb 2018, In: Journal of Bioinformatics and Computational Biology. 16, 1, 16 p., 1740010.

    Research output: Contribution to journal › Article › peer-review

  39. Spatial specificity of auxin responses coordinates wood formation

    Brackmann, K., Qi, J., Gebert, M., Jouannet, V., Schlamp, T., Grünwald, K., Wallner, E. S., Novikova, D. D., Levitsky, V. G., Agustí, J., Sanchez, P., Lohmann, J. U. & Greb, T., 28 Feb 2018, In: Nature Communications. 9, 1, p. 875 15 p., 875.

    Research output: Contribution to journal › Article › peer-review

  40. Pluripotency gene network dynamics: System views from parametric analysis

    Akberdin, I. R., Omelyanchuk, N. A., Fadeev, S. I., Leskova, N. E., Oschepkova, E. A., Kazantsev, F. V., Matushkin, Y. G., Afonnikov, D. A. & Kolchanov, N. A., 29 Mar 2018, In: PLoS ONE. 13, 3, p. e0194464 24 p., 0194464.

    Research output: Contribution to journal › Article › peer-review

  41. Polytene chromosomes – A portrait of functional organization of drosophila genome

    Zykova, T. Y., Levitsky, V. G., Belyaeva, E. S. & Zhimulev, I. F., Apr 2018, In: Current Genomics. 19, 3, p. 179-191 13 p.

    Research output: Contribution to journal › Review article › peer-review

  42. Haplotype analysis of APOE intragenic SNPs

    Babenko, V. N., Afonnikov, D. A., Ignatieva, E. V., Klimov, A. V., Gusev, F. E. & Rogaev, E. I., 19 Apr 2018, In: BMC Neuroscience. 19, Suppl 1, p. 16 12 p., 16.

    Research output: Contribution to journal › Article › peer-review

  43. Marital Structure, Genetic Fitness, and the GJB2 Gene Mutations among Deaf People in Yakutia (Eastern Siberia, Russia)

    Romanov, G. P., Barashkov, N. A., Teryutin, F. M., Lashin, S. A., Solovyev, A. V., Pshennikova, V. G., Bondar, A. A., Morozov, I. V., Sazonov, N. N., Tomsky, M. I., Dzhemileva, L. U., Khusnutdinova, E. K., Posukh, O. L. & Fedorova, S. A., 1 May 2018, In: Russian Journal of Genetics. 54, 5, p. 554-561 8 p.

    Research output: Contribution to journal › Article › peer-review

  44. Converting Hulled into Naked Barley through Targeted Knock-Out of the Nud1 Gene

    Gerasimova, S., Hertig, C., Korotkova, A., Otto, I., Hiekel, S., Kochetov, A., Kumlehn, J. & Khlestkina, E., Aug 2018, In: In Vitro Cellular and Developmental Biology - Plant. 54, p. S101-S101 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  45. Residue coevolution reveals functionally important intramolecular interactions in formamidopyrimidine-DNA glycosylase

    Endutkin, A. V., Koptelov, S. S., Popov, A. V., Torgasheva, N. A., Lomzov, A. A., Tsygankova, A. R., Skiba, T. V., Afonnikov, D. A. & Zharkov, D. O., 1 Sept 2018, In: DNA Repair. 69, p. 24-33 10 p.

    Research output: Contribution to journal › Article › peer-review

  46. Genetic Organization of Open Chromatin Domains Situated in Polytene Chromosome Interbands in Drosophila

    Zykova, T. Y., Popova, O. O., Khoroshko, V. A., Levitsky, V. G., Lavrov, S. A. & Zhimulev, I. F., 1 Nov 2018, In: Doklady Biochemistry and Biophysics. 483, 1, p. 297-301 5 p.

    Research output: Contribution to journal › Article › peer-review

  47. Функциональная аннотация дифференциально экспрессирующихся генов с учетом степени изменения экспрессии (FoldGO)

    Вибе, Д. С., Омельянчук, Н. А. & Миронова, В. В., 6 Dec 2018, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2018665628, Priority date 19 Nov 2018, Priority No. 2018663038

    Research output: Patent › Software registration

  48. Deciphering auxin-ethylene crosstalk at a systems level

    Zemlyanskaya, E. V., Omelyanchuk, N. A., Ubogoeva, E. V. & Mironova, V. V., 14 Dec 2018, In: International Journal of Molecular Sciences. 19, 12, 15 p., 4060.

    Research output: Contribution to journal › Review article › peer-review

  49. 2019

  50. A system approach to the modeling of fungal infections of the wheat leaf

    Nikolaev, S. V., Zubairova, U. S., Skolotneva, E. S., Orlova, E. A. & Afonnikov, D. A., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 1, p. 100-109 10 p.

    Research output: Contribution to journal › Article › peer-review

  51. Image-based analysis of quantitative morphological characteristics of wild potato tubers using the desktop application SeedСounter

    Ivanova, K. A., Komyshev, E. G., Genaev, M. A., Egorova, A. A., Koloshina, K. A., Chalaya, N. A., Afonnikov, D. A., Kochetov, A. V., Rogozina, E. V. & Gerasimova, S. V., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 5, p. 519-526 8 p.

    Research output: Contribution to journal › Article › peer-review

  52. Progress in plant genome sequencing: Research directions

    Bragina, M. K., Afonnikov, D. A. & Salina, E. A., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 1, p. 38-48 11 p.

    Research output: Contribution to journal › Article › peer-review

  53. Web-Based Computational Tools for the Prediction and Analysis of Posttranslational Modifications of Proteins

    Ivanisenko, V. A., Ivanisenko, T. V., Saik, O. V., Demenkov, P. S., Afonnikov, D. A. & Kolchanov, N. A., 1 Jan 2019, Methods in Molecular Biology. Humana Press Inc., Vol. 1934. p. 1-20 20 p. (Methods in Molecular Biology; vol. 1934).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  54. MIGREW: Database on molecular identification of genes for resistance in wheat

    Kazantsev, F. V., Skolotneva, E. S., Kelbin, V. N., Salina, E. A. & Lashin, S. A., 5 Feb 2019, In: BMC Bioinformatics. 20, Suppl 1, 8 p., 36.

    Research output: Contribution to journal › Article › peer-review

  55. The evolution of gene regulatory networks controlling Arabidopsis thaliana L. trichome development

    Doroshkov, A. V., Konstantinov, D. K., Afonnikov, D. A. & Gunbin, K. V., 15 Feb 2019, In: BMC Plant Biology. 19, Suppl 1, 15 p., 53.

    Research output: Contribution to journal › Article › peer-review

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