TY - GEN

T1 - Statistical problems of clusters of transcription factor binding sites in plant genomes

AU - Dergilev, Arthur

AU - Orlov, Yuriy L.

PY - 2020/7

Y1 - 2020/7

N2 - This work presents the results of using computer scripts to analyze ChIP-seq data, calculate clusters, and visualize them in the form of heat maps. In the work, ChIP-seq peaks were used to study the stem cell niche of three plants, among which the well-known Talus (Arabidopsis Thailana), Physcomitrella patens, Chlamydomonas reinhardti. What about the tendency of co-localization of transcription factors in plant genomes? What are the features of this co-localization?.

AB - This work presents the results of using computer scripts to analyze ChIP-seq data, calculate clusters, and visualize them in the form of heat maps. In the work, ChIP-seq peaks were used to study the stem cell niche of three plants, among which the well-known Talus (Arabidopsis Thailana), Physcomitrella patens, Chlamydomonas reinhardti. What about the tendency of co-localization of transcription factors in plant genomes? What are the features of this co-localization?.

KW - binding sites

KW - ChIP-seq

KW - gene expression

KW - heatmaps

KW - pattern search

KW - stem cells

KW - transcription

UR - http://www.scopus.com/inward/record.url?scp=85094822419&partnerID=8YFLogxK

UR - https://elibrary.ru/item.asp?id=45180449

U2 - 10.1109/CSGB51356.2020.9214705

DO - 10.1109/CSGB51356.2020.9214705

M3 - Conference contribution

AN - SCOPUS:85094822419

T3 - Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020

SP - 233

EP - 235

BT - Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020

PB - Institute of Electrical and Electronics Engineers Inc.

T2 - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020

Y2 - 6 July 2020 through 10 July 2020

ER -