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Fourth Report on Chicken Genes and Chromosomes 2022. / Smith, Jacqueline; Alfieri, James M; Anthony, Nick и др.
в:
Cytogenetic and Genome Research, Том 162, № 8-9, 2023, стр. 405-528.
Результаты исследований: Научные публикации в периодических изданиях › обзорная статья › Рецензирование
Harvard
Smith, J, Alfieri, JM, Anthony, N, Arensburger, P, Athrey, GN, Balacco, J, Balic, A, Bardou, P, Barela, P, Bigot, Y, Blackmon, H
, Borodin, PM, Carroll, R, Casono, MC, Charles, M, Cheng, H, Chiodi, M, Cigan, L, Coghill, LM, Crooijmans, R, Das, N, Davey, S, Davidian, A, Degalez, F, Dekkers, JM, Derks, M, Diack, AB, Djikeng, A, Drechsler, Y, Dyomin, A, Fedrigo, O, Fiddaman, SR, Formenti, G, Frantz, LAF, Fulton, JE, Gaginskaya, E, Galkina, S, Gallardo, RA, Geibel, J, Gheyas, AA, Godinez, CJP, Goodell, A, Graves, JAM, Griffin, DK, Haase, B, Han, J-L, Hanotte, O, Henderson, LJ, Hou, Z-C, Howe, K, Huynh, L, Ilatsia, E, Jarvis, ED, Johnson, SM, Kaufman, J, Kelly, T, Kemp, S, Kern, C, Keroack, JH, Klopp, C, Lagarrigue, S, Lamont, SJ, Lange, M, Lanke, A, Larkin, DM, Larson, G, Layos, JKN, Lebrasseur, O
, Malinovskaya, LP, Martin, RJ, Martin Cerezo, ML, Mason, AS, McCarthy, FM, McGrew, MJ, Mountcastle, J, Muhonja, CK, Muir, W, Muret, K, Murphy, TD, Ng'ang'a, I, Nishibori, M, O'Connor, RE, Ogugo, M, Okimoto, R, Ouko, O, Patel, HR, Perini, F, Pigozzi, MI, Potter, KC, Price, PD, Reimer, C, Rice, ES, Rocos, N, Rogers, TF, Saelao, P, Schauer, J, Schnabel, RD, Schneider, VA, Simianer, H, Smith, A, Stevens, MP, Stiers, K, Tiambo, CK, Tixier-Boichard, M, Torgasheva, AA, Tracey, A, Tregaskes, CA, Vervelde, L, Wang, Y, Warren, WC, Waters, PD, Webb, D, Weigend, S, Wolc, A, Wright, AE, Wright, D, Wu, Z, Yamagata, M, Yang, C, Yin, Z-T, Young, MC, Zhang, G, Zhao, B & Zhou, H 2023, '
Fourth Report on Chicken Genes and Chromosomes 2022',
Cytogenetic and Genome Research, Том. 162, № 8-9, стр. 405-528.
https://doi.org/10.1159/000529376APA
Smith, J., Alfieri, J. M., Anthony, N., Arensburger, P., Athrey, G. N., Balacco, J., Balic, A., Bardou, P., Barela, P., Bigot, Y., Blackmon, H.
, Borodin, P. M., Carroll, R., Casono, M. C., Charles, M., Cheng, H., Chiodi, M., Cigan, L., Coghill, L. M., ... Zhou, H. (2023).
Fourth Report on Chicken Genes and Chromosomes 2022.
Cytogenetic and Genome Research,
162(8-9), 405-528.
https://doi.org/10.1159/000529376Vancouver
Author
BibTeX
@article{4e4c0da4ada14da0843cb99963cb50d1,
title = "Fourth Report on Chicken Genes and Chromosomes 2022",
author = "Jacqueline Smith and Alfieri, {James M} and Nick Anthony and Peter Arensburger and Athrey, {Giridhar N} and Jennifer Balacco and Adam Balic and Philippe Bardou and Paul Barela and Yves Bigot and Heath Blackmon and Borodin, {Pavel M} and Rachel Carroll and Casono, {Meya C} and Mathieu Charles and Hans Cheng and Maddie Chiodi and Lacey Cigan and Coghill, {Lyndon M} and Richard Crooijmans and Neelabja Das and Sean Davey and Asya Davidian and Fabien Degalez and Dekkers, {Jack M} and Martijn Derks and Diack, {Abigail B} and Appolinaire Djikeng and Yvonne Drechsler and Alexander Dyomin and Olivier Fedrigo and Fiddaman, {Steven R} and Giulio Formenti and Frantz, {Laurent A F} and Fulton, {Janet E} and Elena Gaginskaya and Svetlana Galkina and Gallardo, {Rodrigo A} and Johannes Geibel and Gheyas, {Almas A} and Godinez, {Cyrill John P} and Ashton Goodell and Graves, {Jennifer A M} and Griffin, {Darren K} and Bettina Haase and Jian-Lin Han and Olivier Hanotte and Henderson, {Lindsay J} and Zhuo-Cheng Hou and Kerstin Howe and Lan Huynh and Evans Ilatsia and Jarvis, {Erich D} and Johnson, {Sarah M} and Jim Kaufman and Terra Kelly and Steve Kemp and Colin Kern and Keroack, {Jacob H} and Christophe Klopp and Sandrine Lagarrigue and Lamont, {Susan J} and Margaret Lange and Anika Lanke and Larkin, {Denis M} and Greger Larson and Layos, {John King N} and Oph{\'e}lie Lebrasseur and Malinovskaya, {Lyubov P} and Martin, {Rebecca J} and {Martin Cerezo}, {Maria Luisa} and Mason, {Andrew S} and McCarthy, {Fiona M} and McGrew, {Michael J} and Jacquelyn Mountcastle and Muhonja, {Christine Kamidi} and William Muir and K{\'e}vin Muret and Murphy, {Terence D} and Ismael Ng'ang'a and Masahide Nishibori and O'Connor, {Rebecca E} and Moses Ogugo and Ron Okimoto and Ochieng Ouko and Patel, {Hardip R} and Francesco Perini and Pigozzi, {Mar{\'i}a Ines} and Potter, {Krista C} and Price, {Peter D} and Christian Reimer and Rice, {Edward S} and Nicolas Rocos and Rogers, {Thea F} and Perot Saelao and Jens Schauer and Schnabel, {Robert D} and Schneider, {Valerie A} and Henner Simianer and Adrian Smith and Stevens, {Mark P} and Kyle Stiers and Tiambo, {Christian Keambou} and Michele Tixier-Boichard and Torgasheva, {Anna A} and Alan Tracey and Tregaskes, {Clive A} and Lonneke Vervelde and Ying Wang and Warren, {Wesley C} and Waters, {Paul D} and David Webb and Steffen Weigend and Anna Wolc and Wright, {Alison E} and Dominic Wright and Zhou Wu and Masahito Yamagata and Chentao Yang and Zhong-Tao Yin and Young, {Michelle C} and Guojie Zhang and Bingru Zhao and Huaijun Zhou",
note = "This study was funded by the Bill and Melinda Gates Foundation (BMGF) and with UK aid from the UK Government{\textquoteright}s Department for International Development (Grant Agreement OPP1127286) under the auspices of the Centre for Tropical Livestock Genetics and Health (CTLGH), established jointly by the University of Edinburgh, Scotland{\textquoteright}s Rural College (SRUC), and the International Livestock Research Institute (ILRI). The Chinese Government{\textquoteright}s contribution to CAAS-ILRI Joint Laboratory on Livestock and Forage Genetic Resources in Beijing (2018-GJHZ-01) is appreciated. The findings and conclusions contained within this article are those of the authors and do not necessarily reflect positions or policies of the BMGF nor the UK and Chinese Governments. A.S.M. is supported by a Research Fellowship in Cancer Informatics by York Against Cancer. This work was supported by a Biotechnology and Biological Sciences Research Council pump priming award (BB/W510737/1) and a researcher mobility award from The Houghton Trust (HT/RMG/22/01). The authors thank the Wellcome Trust (Investigator Award 110106/A/15/Z to J.K.), the BBSRC (DTP PhD in Biological Sciences at the University of Cambridge to R.J.M.), and the University of Edinburgh for support. This research was funded by the Biotechnology and Biological Sciences Research Council (BB/K008226/1 and BB/J010170/1 to D.M.L, and BB/K008161/1 to D.K.G). This work was supported by USDA NIFA 2020-67015-31574 to Y.D. at the Western University of Health Sciences, and USDA NIFA 2022-67015-36218 to W.C.W., at the University of Missouri. The work of T.D.M. and V.A.S. was supported by the National Center for Biotechnology Information of the National Library of Medicine (NLM), National Institutes of Health. This study was funded by the US Agency for International Development Feed the Future Innovation Lab for Genomics to Improve Poultry AID-OAAA-13-00080. Partial support was provided by the United States Department of Agriculture, National Institute of Food and Agriculture, Multistate Research Project NRSP8 and NE1834 (H.Z. and S.L.) and the California Agricultural Experimental Station (H.Z.). The computational part of the project was funded by SuperMUC grant ID: 23826 awarded by The Leibniz Supercomputing Centre (LRZ), of the Bavarian Academy of Sciences and Humanities. The authors were supported by European Research Council grants (ERC-2013-StG-337574-UNDEAD and ERC-2019-StG-853272-PALAEOFARM) and by the Wellcome Trust (210119/Z/18/Z). The authors would like to acknowledge the Edinburgh Genomics Facility (Edinburgh, UK) for generation of the sequence data. This study was funded by the Bill and Melinda Gates Foundation (BMGF) and with UK aid from the UK Government{\textquoteright}s Department for International Development (Grant Agreement OPP1127286) under the auspices of the Centre for Tropical Livestock Genetics and Health (CTLGH), established jointly by the University of Edinburgh, SRUC (Scotland{\textquoteright}s Rural College), and the International Livestock Research Institute. The findings and conclusions contained within are those of the authors and do not necessarily reflect positions or policies of the BMGF nor the UK Government. We thank the CGIAR livestock program (CRP) for supporting the sampling component of the research. Sequencing data provided by INRAE teams were produced with public sources of funding, coming from INRAE, the French National Research Agency (ANR), the European Commission (SABRE project) and its HORIZON 2020 program (FEED-A-GENE, IMAGE projects). Data funded by INRAE and ANR were previously described by Tixier-Boichard et al. [2020]. https://doi.org/10.20870/productions-animales.2020.33.3.4564. Sampling of data provided by FLI was funded by the German Federal Ministry of Education and Research (BMBF) via the SYNBREED project (FKZ 0315528E; www.synbreed.tum.de) and sequenced within the project IMAGE - Innovative Management of Animal Genetic Resources (www.imageh2020.eu, funded by the EU Horizon, 2020 research and innovation program No. 677353). Sequencing of the ancient genomes was funded by the Arts and Humanities Research Council (grant AH/L006979/1). O.L. is supported by the European Union{\textquoteright}s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement no. 895107. We are sincerely grateful to Alissa Gousseva for her kind help in English. The analytical facilities were provided by “Chromas” Resource Center of the Saint Petersburg State University Scientific Park. The study was supported by Russian Science Foundation grant #22-24-00538. The National Avian Research Facility (NARF) provides a range of resources and expertise for the avian research community in the UK and internationally. Areas of research supported by the NARF include avian immunology, host-pathogen interactions, physiology and behaviour, developmental biology, and genetics. The NARF was founded in 2013, and is based at The Roslin Institute, on the University of Edinburgh{\textquoteright}s Easter Bush Campus, UK. The NARF was established via capital support from The Roslin Foundation and the University of Edinburgh, in addition to funding from the Biotechnology and Biological Sciences Research Council (BBSRC) and the Wellcome Trust. The facility continues to be supported by the University of Edinburgh and the BBSRC. Current research at the author's laboratory is supported by ANPCyT, FONCYT BID-PICT 2016 #2302. The work was supported by the Ministry of Science and Higher Education of the Russian Federation, grant numbers FWNR-2022-2015 and 2019-0546 (FSUS-2020-0040). The research leading to this document has received funding from the Center of Tropical Livestock Genetics and Health (CTLGH) program and the Kenya Agricultural and Livestock Research Organization (KALRO). P.D.W. is supported by Australian Research Council Discovery Projects (DP180100931, DP210103512, and DP220101429). J.M.G. is supported by Australian Research Council Discovery Projects (DP210103512 and DP220101429). H.R.P. is supported by the Australian National University and NHMRC Synergy Grant (APP2011277). The authors acknowledge the provision of computing resources provided by the Australian BioCommons Leadership Share (ABLeS) program. This program is co-funded by Bioplatforms Australia (enabled by NCRIS), the National Computational Infrastructure and Pawsey Supercomputing Centre.",
year = "2023",
doi = "10.1159/000529376",
language = "English",
volume = "162",
pages = "405--528",
journal = "Cytogenetic and Genome Research",
issn = "1424-8581",
publisher = "S. Karger AG",
number = "8-9",
}
RIS
TY - JOUR
T1 - Fourth Report on Chicken Genes and Chromosomes 2022
AU - Smith, Jacqueline
AU - Alfieri, James M
AU - Anthony, Nick
AU - Arensburger, Peter
AU - Athrey, Giridhar N
AU - Balacco, Jennifer
AU - Balic, Adam
AU - Bardou, Philippe
AU - Barela, Paul
AU - Bigot, Yves
AU - Blackmon, Heath
AU - Borodin, Pavel M
AU - Carroll, Rachel
AU - Casono, Meya C
AU - Charles, Mathieu
AU - Cheng, Hans
AU - Chiodi, Maddie
AU - Cigan, Lacey
AU - Coghill, Lyndon M
AU - Crooijmans, Richard
AU - Das, Neelabja
AU - Davey, Sean
AU - Davidian, Asya
AU - Degalez, Fabien
AU - Dekkers, Jack M
AU - Derks, Martijn
AU - Diack, Abigail B
AU - Djikeng, Appolinaire
AU - Drechsler, Yvonne
AU - Dyomin, Alexander
AU - Fedrigo, Olivier
AU - Fiddaman, Steven R
AU - Formenti, Giulio
AU - Frantz, Laurent A F
AU - Fulton, Janet E
AU - Gaginskaya, Elena
AU - Galkina, Svetlana
AU - Gallardo, Rodrigo A
AU - Geibel, Johannes
AU - Gheyas, Almas A
AU - Godinez, Cyrill John P
AU - Goodell, Ashton
AU - Graves, Jennifer A M
AU - Griffin, Darren K
AU - Haase, Bettina
AU - Han, Jian-Lin
AU - Hanotte, Olivier
AU - Henderson, Lindsay J
AU - Hou, Zhuo-Cheng
AU - Howe, Kerstin
AU - Huynh, Lan
AU - Ilatsia, Evans
AU - Jarvis, Erich D
AU - Johnson, Sarah M
AU - Kaufman, Jim
AU - Kelly, Terra
AU - Kemp, Steve
AU - Kern, Colin
AU - Keroack, Jacob H
AU - Klopp, Christophe
AU - Lagarrigue, Sandrine
AU - Lamont, Susan J
AU - Lange, Margaret
AU - Lanke, Anika
AU - Larkin, Denis M
AU - Larson, Greger
AU - Layos, John King N
AU - Lebrasseur, Ophélie
AU - Malinovskaya, Lyubov P
AU - Martin, Rebecca J
AU - Martin Cerezo, Maria Luisa
AU - Mason, Andrew S
AU - McCarthy, Fiona M
AU - McGrew, Michael J
AU - Mountcastle, Jacquelyn
AU - Muhonja, Christine Kamidi
AU - Muir, William
AU - Muret, Kévin
AU - Murphy, Terence D
AU - Ng'ang'a, Ismael
AU - Nishibori, Masahide
AU - O'Connor, Rebecca E
AU - Ogugo, Moses
AU - Okimoto, Ron
AU - Ouko, Ochieng
AU - Patel, Hardip R
AU - Perini, Francesco
AU - Pigozzi, María Ines
AU - Potter, Krista C
AU - Price, Peter D
AU - Reimer, Christian
AU - Rice, Edward S
AU - Rocos, Nicolas
AU - Rogers, Thea F
AU - Saelao, Perot
AU - Schauer, Jens
AU - Schnabel, Robert D
AU - Schneider, Valerie A
AU - Simianer, Henner
AU - Smith, Adrian
AU - Stevens, Mark P
AU - Stiers, Kyle
AU - Tiambo, Christian Keambou
AU - Tixier-Boichard, Michele
AU - Torgasheva, Anna A
AU - Tracey, Alan
AU - Tregaskes, Clive A
AU - Vervelde, Lonneke
AU - Wang, Ying
AU - Warren, Wesley C
AU - Waters, Paul D
AU - Webb, David
AU - Weigend, Steffen
AU - Wolc, Anna
AU - Wright, Alison E
AU - Wright, Dominic
AU - Wu, Zhou
AU - Yamagata, Masahito
AU - Yang, Chentao
AU - Yin, Zhong-Tao
AU - Young, Michelle C
AU - Zhang, Guojie
AU - Zhao, Bingru
AU - Zhou, Huaijun
N1 - This study was funded by the Bill and Melinda Gates Foundation (BMGF) and with UK aid from the UK Government’s Department for International Development (Grant Agreement OPP1127286) under the auspices of the Centre for Tropical Livestock Genetics and Health (CTLGH), established jointly by the University of Edinburgh, Scotland’s Rural College (SRUC), and the International Livestock Research Institute (ILRI). The Chinese Government’s contribution to CAAS-ILRI Joint Laboratory on Livestock and Forage Genetic Resources in Beijing (2018-GJHZ-01) is appreciated. The findings and conclusions contained within this article are those of the authors and do not necessarily reflect positions or policies of the BMGF nor the UK and Chinese Governments.
A.S.M. is supported by a Research Fellowship in Cancer Informatics by York Against Cancer. This work was supported by a Biotechnology and Biological Sciences Research Council pump priming award (BB/W510737/1) and a researcher mobility award from The Houghton Trust (HT/RMG/22/01).
The authors thank the Wellcome Trust (Investigator Award 110106/A/15/Z to J.K.), the BBSRC (DTP PhD in Biological Sciences at the University of Cambridge to R.J.M.), and the University of Edinburgh for support.
This research was funded by the Biotechnology and Biological Sciences Research Council (BB/K008226/1 and BB/J010170/1 to D.M.L, and BB/K008161/1 to D.K.G).
This work was supported by USDA NIFA 2020-67015-31574 to Y.D. at the Western University of Health Sciences, and USDA NIFA 2022-67015-36218 to W.C.W., at the University of Missouri. The work of T.D.M. and V.A.S. was supported by the National Center for Biotechnology Information of the National Library of Medicine (NLM), National Institutes of Health.
This study was funded by the US Agency for International Development Feed the Future Innovation Lab for Genomics to Improve Poultry AID-OAAA-13-00080. Partial support was provided by the United States Department of Agriculture, National Institute of Food and Agriculture, Multistate Research Project NRSP8 and NE1834 (H.Z. and S.L.) and the California Agricultural Experimental Station (H.Z.).
The computational part of the project was funded by SuperMUC grant ID: 23826 awarded by The Leibniz Supercomputing Centre (LRZ), of the Bavarian Academy of Sciences and Humanities. The authors were supported by European Research Council grants (ERC-2013-StG-337574-UNDEAD and ERC-2019-StG-853272-PALAEOFARM) and by the Wellcome Trust (210119/Z/18/Z). The authors would like to acknowledge the Edinburgh Genomics Facility (Edinburgh, UK) for generation of the sequence data. This study was funded by the Bill and Melinda Gates Foundation (BMGF) and with UK aid from the UK Government’s Department for International Development (Grant Agreement OPP1127286) under the auspices of the Centre for Tropical Livestock Genetics and Health (CTLGH), established jointly by the University of Edinburgh, SRUC (Scotland’s Rural College), and the International Livestock Research Institute. The findings and conclusions contained within are those of the authors and do not necessarily reflect positions or policies of the BMGF nor the UK Government. We thank the CGIAR livestock program (CRP) for supporting the sampling component of the research. Sequencing data provided by INRAE teams were produced with public sources of funding, coming from INRAE, the French National Research Agency (ANR), the European Commission (SABRE project) and its HORIZON 2020 program (FEED-A-GENE, IMAGE projects). Data funded by INRAE and ANR were previously described by Tixier-Boichard et al. [2020]. https://doi.org/10.20870/productions-animales.2020.33.3.4564. Sampling of data provided by FLI was funded by the German Federal Ministry of Education and Research (BMBF) via the SYNBREED project (FKZ 0315528E; www.synbreed.tum.de) and sequenced within the project IMAGE - Innovative Management of Animal Genetic Resources (www.imageh2020.eu, funded by the EU Horizon, 2020 research and innovation program No. 677353). Sequencing of the ancient genomes was funded by the Arts and Humanities Research Council (grant AH/L006979/1). O.L. is supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement no. 895107.
We are sincerely grateful to Alissa Gousseva for her kind help in English. The analytical facilities were provided by “Chromas” Resource Center of the Saint Petersburg State University Scientific Park. The study was supported by Russian Science Foundation grant #22-24-00538.
The National Avian Research Facility (NARF) provides a range of resources and expertise for the avian research community in the UK and internationally. Areas of research supported by the NARF include avian immunology, host-pathogen interactions, physiology and behaviour, developmental biology, and genetics. The NARF was founded in 2013, and is based at The Roslin Institute, on the University of Edinburgh’s Easter Bush Campus, UK. The NARF was established via capital support from The Roslin Foundation and the University of Edinburgh, in addition to funding from the Biotechnology and Biological Sciences Research Council (BBSRC) and the Wellcome Trust. The facility continues to be supported by the University of Edinburgh and the BBSRC.
Current research at the author's laboratory is supported by ANPCyT, FONCYT BID-PICT 2016 #2302.
The work was supported by the Ministry of Science and Higher Education of the Russian Federation, grant numbers FWNR-2022-2015 and 2019-0546 (FSUS-2020-0040).
The research leading to this document has received funding from the Center of Tropical Livestock Genetics and Health (CTLGH) program and the Kenya Agricultural and Livestock Research Organization (KALRO).
P.D.W. is supported by Australian Research Council Discovery Projects (DP180100931, DP210103512, and DP220101429). J.M.G. is supported by Australian Research Council Discovery Projects (DP210103512 and DP220101429). H.R.P. is supported by the Australian National University and NHMRC Synergy Grant (APP2011277). The authors acknowledge the provision of computing resources provided by the Australian BioCommons Leadership Share (ABLeS) program. This program is co-funded by Bioplatforms Australia (enabled by NCRIS), the National Computational Infrastructure and Pawsey Supercomputing Centre.
PY - 2023
Y1 - 2023
UR - https://www.scopus.com/record/display.uri?eid=2-s2.0-85164392995&origin=inward&txGid=cf5ff90d617ff2c518fcdb9bb9699638
UR - https://www.mendeley.com/catalogue/8a0c23a1-5b92-3311-957b-4e304fb93f53/
U2 - 10.1159/000529376
DO - 10.1159/000529376
M3 - Review article
C2 - 36716736
VL - 162
SP - 405
EP - 528
JO - Cytogenetic and Genome Research
JF - Cytogenetic and Genome Research
SN - 1424-8581
IS - 8-9
ER -
