Standard

BioUML : an integrated environment for systems biology and collaborative analysis of biomedical data. / Kolpakov, Fedor; Akberdin, Ilya; Kashapov, Timur и др.

в: Nucleic Acids Research, Том 47, № W1, 01.07.2019, стр. W225-W233.

Результаты исследований: Научные публикации в периодических изданияхстатьяРецензирование

Harvard

Kolpakov, F, Akberdin, I, Kashapov, T, Kiselev, L, Kolmykov, S, Kondrakhin, Y, Kutumova, E, Mandrik, N, Pintus, S, Ryabova, A, Sharipov, R, Yevshin, I & Kel, A 2019, 'BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data', Nucleic Acids Research, Том. 47, № W1, стр. W225-W233. https://doi.org/10.1093/nar/gkz440

APA

Kolpakov, F., Akberdin, I., Kashapov, T., Kiselev, L., Kolmykov, S., Kondrakhin, Y., Kutumova, E., Mandrik, N., Pintus, S., Ryabova, A., Sharipov, R., Yevshin, I., & Kel, A. (2019). BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data. Nucleic Acids Research, 47(W1), W225-W233. https://doi.org/10.1093/nar/gkz440

Vancouver

Kolpakov F, Akberdin I, Kashapov T, Kiselev L, Kolmykov S, Kondrakhin Y и др. BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data. Nucleic Acids Research. 2019 июль 1;47(W1):W225-W233. doi: 10.1093/nar/gkz440

Author

Kolpakov, Fedor ; Akberdin, Ilya ; Kashapov, Timur и др. / BioUML : an integrated environment for systems biology and collaborative analysis of biomedical data. в: Nucleic Acids Research. 2019 ; Том 47, № W1. стр. W225-W233.

BibTeX

@article{9048516fce724b2080904ae1103e8db1,
title = "BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data",
abstract = "BioUML (homepage: http://www.biouml.org, main public server: https://ict.biouml.org) is a web-based integrated environment (platform) for systems biology and the analysis of biomedical data generated by omics technologies. The BioUML vision is to provide a computational platform to build virtual cell, virtual physiological human and virtual patient. BioUML spans a comprehensive range of capabilities, including access to biological databases, powerful tools for systems biology (visual modelling, simulation, parameters fitting and analyses), a genome browser, scripting (R, JavaScript) and a workflow engine. Due to integration with the Galaxy platform and R/Bioconductor, BioUML provides powerful possibilities for the analyses of omics data. The plug-in-based architecture allows the user to add new functionalities using plug-ins. To facilitate a user focus on a particular task or database, we have developed several predefined perspectives that display only those web interface elements that are needed for a specific task. To support collaborative work on scientific projects, there is a central authentication and authorization system (https://bio-store.org). The diagram editor enables several remote users to simultaneously edit diagrams.",
keywords = "FACTOR-BINDING SITES, STOCHASTIC SIMULATION, MODULAR MODEL, SOFTWARE, TOOL, CIRCULATION, GENENET",
author = "Fedor Kolpakov and Ilya Akberdin and Timur Kashapov and Llya Kiselev and Semyon Kolmykov and Yury Kondrakhin and Elena Kutumova and Nikita Mandrik and Sergey Pintus and Anna Ryabova and Ruslan Sharipov and Ivan Yevshin and Alexander Kel",
note = "{\textcopyright} The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.",
year = "2019",
month = jul,
day = "1",
doi = "10.1093/nar/gkz440",
language = "English",
volume = "47",
pages = "W225--W233",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "W1",

}

RIS

TY - JOUR

T1 - BioUML

T2 - an integrated environment for systems biology and collaborative analysis of biomedical data

AU - Kolpakov, Fedor

AU - Akberdin, Ilya

AU - Kashapov, Timur

AU - Kiselev, Llya

AU - Kolmykov, Semyon

AU - Kondrakhin, Yury

AU - Kutumova, Elena

AU - Mandrik, Nikita

AU - Pintus, Sergey

AU - Ryabova, Anna

AU - Sharipov, Ruslan

AU - Yevshin, Ivan

AU - Kel, Alexander

N1 - © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.

PY - 2019/7/1

Y1 - 2019/7/1

N2 - BioUML (homepage: http://www.biouml.org, main public server: https://ict.biouml.org) is a web-based integrated environment (platform) for systems biology and the analysis of biomedical data generated by omics technologies. The BioUML vision is to provide a computational platform to build virtual cell, virtual physiological human and virtual patient. BioUML spans a comprehensive range of capabilities, including access to biological databases, powerful tools for systems biology (visual modelling, simulation, parameters fitting and analyses), a genome browser, scripting (R, JavaScript) and a workflow engine. Due to integration with the Galaxy platform and R/Bioconductor, BioUML provides powerful possibilities for the analyses of omics data. The plug-in-based architecture allows the user to add new functionalities using plug-ins. To facilitate a user focus on a particular task or database, we have developed several predefined perspectives that display only those web interface elements that are needed for a specific task. To support collaborative work on scientific projects, there is a central authentication and authorization system (https://bio-store.org). The diagram editor enables several remote users to simultaneously edit diagrams.

AB - BioUML (homepage: http://www.biouml.org, main public server: https://ict.biouml.org) is a web-based integrated environment (platform) for systems biology and the analysis of biomedical data generated by omics technologies. The BioUML vision is to provide a computational platform to build virtual cell, virtual physiological human and virtual patient. BioUML spans a comprehensive range of capabilities, including access to biological databases, powerful tools for systems biology (visual modelling, simulation, parameters fitting and analyses), a genome browser, scripting (R, JavaScript) and a workflow engine. Due to integration with the Galaxy platform and R/Bioconductor, BioUML provides powerful possibilities for the analyses of omics data. The plug-in-based architecture allows the user to add new functionalities using plug-ins. To facilitate a user focus on a particular task or database, we have developed several predefined perspectives that display only those web interface elements that are needed for a specific task. To support collaborative work on scientific projects, there is a central authentication and authorization system (https://bio-store.org). The diagram editor enables several remote users to simultaneously edit diagrams.

KW - FACTOR-BINDING SITES

KW - STOCHASTIC SIMULATION

KW - MODULAR MODEL

KW - SOFTWARE

KW - TOOL

KW - CIRCULATION

KW - GENENET

UR - http://www.scopus.com/inward/record.url?scp=85069238519&partnerID=8YFLogxK

U2 - 10.1093/nar/gkz440

DO - 10.1093/nar/gkz440

M3 - Article

C2 - 31131402

AN - SCOPUS:85069238519

VL - 47

SP - W225-W233

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - W1

ER -

ID: 20879170