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An Analysis of IS630/Tc1/mariner Transposons in the Genome of a Pacific Oyster, Crassostrea gigas. / Puzakov, M. V.; Puzakova, L. V.; Cheresiz, S. V.

в: Journal of Molecular Evolution, Том 86, № 8, 01.10.2018, стр. 566-580.

Результаты исследований: Научные публикации в периодических изданияхстатьяРецензирование

Harvard

Puzakov, MV, Puzakova, LV & Cheresiz, SV 2018, 'An Analysis of IS630/Tc1/mariner Transposons in the Genome of a Pacific Oyster, Crassostrea gigas', Journal of Molecular Evolution, Том. 86, № 8, стр. 566-580. https://doi.org/10.1007/s00239-018-9868-2

APA

Vancouver

Puzakov MV, Puzakova LV, Cheresiz SV. An Analysis of IS630/Tc1/mariner Transposons in the Genome of a Pacific Oyster, Crassostrea gigas. Journal of Molecular Evolution. 2018 окт. 1;86(8):566-580. doi: 10.1007/s00239-018-9868-2

Author

Puzakov, M. V. ; Puzakova, L. V. ; Cheresiz, S. V. / An Analysis of IS630/Tc1/mariner Transposons in the Genome of a Pacific Oyster, Crassostrea gigas. в: Journal of Molecular Evolution. 2018 ; Том 86, № 8. стр. 566-580.

BibTeX

@article{d804ada874a74deaac4a85df65857df2,
title = "An Analysis of IS630/Tc1/mariner Transposons in the Genome of a Pacific Oyster, Crassostrea gigas",
abstract = "Transposable elements represent the DNA fragments capable of increasing their copy number and moving within the genome. Class II mobile elements represents the DNA transposons, which transpose via excision and the subsequent reinsertion at random genomic loci. The increase of their copy number occurs only when the transposition event is coupled with the replication. IS630/Tc1/mariner DNA transposon superfamily is one of the largest and widely distributed among the Class II elements. In this work, we provide a detailed analysis of IS630/Tc1/mariner DNA transposons from the Pacific oyster, Crassostrea gigas. IS630/Tc1/mariner transposons represented in the genome of the Pacific oyster belong to four families, Tc1 (DD34E), mariner (DD34D), pogo (DDxD), and rosa (DD41D). More than a half of IS630/Tc1/mariner elements from C. gigas belong to Tc1 family. Furthermore, Mariner-31_CGi element was shown to represent a new and previously unknown family with DD37E signature. We also discovered the full-size transcripts of eight elements from Tc1, mariner, and pogo families, three of which can, presumably, retain their transposition activity.",
keywords = "IS630/Tc1/mariner, Mollusca, Pacific oyster, Transposable elements, Transposon activity, HORIZONTAL TRANSFER, POGO-LIKE TRANSPOSASES, TC1-MARINER SUPERFAMILY, DROSOPHILA-MELANOGASTER, MARINER-FAMILY, ELEMENT, CAENORHABDITIS-ELEGANS, EVOLUTION, COMMON ANCESTOR, VERTEBRATE",
author = "Puzakov, {M. V.} and Puzakova, {L. V.} and Cheresiz, {S. V.}",
note = "Publisher Copyright: {\textcopyright} 2018, Springer Science+Business Media, LLC, part of Springer Nature.",
year = "2018",
month = oct,
day = "1",
doi = "10.1007/s00239-018-9868-2",
language = "English",
volume = "86",
pages = "566--580",
journal = "Journal of Molecular Evolution",
issn = "0022-2844",
publisher = "Springer New York",
number = "8",

}

RIS

TY - JOUR

T1 - An Analysis of IS630/Tc1/mariner Transposons in the Genome of a Pacific Oyster, Crassostrea gigas

AU - Puzakov, M. V.

AU - Puzakova, L. V.

AU - Cheresiz, S. V.

N1 - Publisher Copyright: © 2018, Springer Science+Business Media, LLC, part of Springer Nature.

PY - 2018/10/1

Y1 - 2018/10/1

N2 - Transposable elements represent the DNA fragments capable of increasing their copy number and moving within the genome. Class II mobile elements represents the DNA transposons, which transpose via excision and the subsequent reinsertion at random genomic loci. The increase of their copy number occurs only when the transposition event is coupled with the replication. IS630/Tc1/mariner DNA transposon superfamily is one of the largest and widely distributed among the Class II elements. In this work, we provide a detailed analysis of IS630/Tc1/mariner DNA transposons from the Pacific oyster, Crassostrea gigas. IS630/Tc1/mariner transposons represented in the genome of the Pacific oyster belong to four families, Tc1 (DD34E), mariner (DD34D), pogo (DDxD), and rosa (DD41D). More than a half of IS630/Tc1/mariner elements from C. gigas belong to Tc1 family. Furthermore, Mariner-31_CGi element was shown to represent a new and previously unknown family with DD37E signature. We also discovered the full-size transcripts of eight elements from Tc1, mariner, and pogo families, three of which can, presumably, retain their transposition activity.

AB - Transposable elements represent the DNA fragments capable of increasing their copy number and moving within the genome. Class II mobile elements represents the DNA transposons, which transpose via excision and the subsequent reinsertion at random genomic loci. The increase of their copy number occurs only when the transposition event is coupled with the replication. IS630/Tc1/mariner DNA transposon superfamily is one of the largest and widely distributed among the Class II elements. In this work, we provide a detailed analysis of IS630/Tc1/mariner DNA transposons from the Pacific oyster, Crassostrea gigas. IS630/Tc1/mariner transposons represented in the genome of the Pacific oyster belong to four families, Tc1 (DD34E), mariner (DD34D), pogo (DDxD), and rosa (DD41D). More than a half of IS630/Tc1/mariner elements from C. gigas belong to Tc1 family. Furthermore, Mariner-31_CGi element was shown to represent a new and previously unknown family with DD37E signature. We also discovered the full-size transcripts of eight elements from Tc1, mariner, and pogo families, three of which can, presumably, retain their transposition activity.

KW - IS630/Tc1/mariner

KW - Mollusca

KW - Pacific oyster

KW - Transposable elements

KW - Transposon activity

KW - HORIZONTAL TRANSFER

KW - POGO-LIKE TRANSPOSASES

KW - TC1-MARINER SUPERFAMILY

KW - DROSOPHILA-MELANOGASTER

KW - MARINER-FAMILY

KW - ELEMENT

KW - CAENORHABDITIS-ELEGANS

KW - EVOLUTION

KW - COMMON ANCESTOR

KW - VERTEBRATE

UR - http://www.scopus.com/inward/record.url?scp=85054547018&partnerID=8YFLogxK

U2 - 10.1007/s00239-018-9868-2

DO - 10.1007/s00239-018-9868-2

M3 - Article

C2 - 30283979

AN - SCOPUS:85054547018

VL - 86

SP - 566

EP - 580

JO - Journal of Molecular Evolution

JF - Journal of Molecular Evolution

SN - 0022-2844

IS - 8

ER -

ID: 17039270