Результаты исследований: Публикации в книгах, отчётах, сборниках, трудах конференций › статья в сборнике материалов конференции › научная › Рецензирование
Advanced data curation in GTRD database : Hierarchical dictionaries of cell types and experimental factors. / Kulyashov, Mikhail A.; Kolmykov, Semyon K.; Yevshin, Ivan S. и др.
Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., 2020. стр. 23-27 9214681 (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).Результаты исследований: Публикации в книгах, отчётах, сборниках, трудах конференций › статья в сборнике материалов конференции › научная › Рецензирование
}
TY - GEN
T1 - Advanced data curation in GTRD database
T2 - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020
AU - Kulyashov, Mikhail A.
AU - Kolmykov, Semyon K.
AU - Yevshin, Ivan S.
AU - Kolpakov, Fedor A.
N1 - Funding Information: This work was supported by the Russian Science Foundation. (grant № 19-14-00295). Publisher Copyright: © 2020 IEEE. Copyright: Copyright 2020 Elsevier B.V., All rights reserved.
PY - 2020/7
Y1 - 2020/7
N2 - GEO database contains a lot of different experiments about transcription regulation. Most part of such experiments (ChIP-seq, DNase-seq and Histone-ChIP-seq) for 9 species (Homo sapiens, Mus musculus, Rattus norvegicus, Danio rerio, Caenorhabditis elegans, Drosophila melanogaster, Saccharomyces cerevisiae, Schizosaccharomyces pombe and Arabidopsis thaliana) were annotated and uniformly processed in GTRD database. Here we are describing the latest advances in these data annotations for GTRD database to formalize experimental data: hierarchical dictionaries of cell types and experimental factors. This approach helps us to integrate experimental data by cell lines (cell types and tissues) and experimental conditions as well as simplifies searching for relevant information for a user.
AB - GEO database contains a lot of different experiments about transcription regulation. Most part of such experiments (ChIP-seq, DNase-seq and Histone-ChIP-seq) for 9 species (Homo sapiens, Mus musculus, Rattus norvegicus, Danio rerio, Caenorhabditis elegans, Drosophila melanogaster, Saccharomyces cerevisiae, Schizosaccharomyces pombe and Arabidopsis thaliana) were annotated and uniformly processed in GTRD database. Here we are describing the latest advances in these data annotations for GTRD database to formalize experimental data: hierarchical dictionaries of cell types and experimental factors. This approach helps us to integrate experimental data by cell lines (cell types and tissues) and experimental conditions as well as simplifies searching for relevant information for a user.
KW - database structure
KW - experiments annotation
KW - experiments comparison
KW - GTRD
UR - http://www.scopus.com/inward/record.url?scp=85094819427&partnerID=8YFLogxK
UR - https://www.elibrary.ru/item.asp?id=45218761
U2 - 10.1109/CSGB51356.2020.9214681
DO - 10.1109/CSGB51356.2020.9214681
M3 - Conference contribution
AN - SCOPUS:85094819427
T3 - Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020
SP - 23
EP - 27
BT - Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020
PB - Institute of Electrical and Electronics Engineers Inc.
Y2 - 6 July 2020 through 10 July 2020
ER -
ID: 26006867