Research output: Contribution to journal › Review article › peer-review
The plastid and mitochondrial genomes of Vavilovia formosa (Stev.) Fed. And the phylogeny of related legume genera. / Shatskaya, N. V.; Bogdanova, V. S.; Kosterin, O. E. et al.
In: Вавиловский журнал генетики и селекции, Vol. 23, No. 8, 01.08.2019, p. 972-980.Research output: Contribution to journal › Review article › peer-review
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TY - JOUR
T1 - The plastid and mitochondrial genomes of Vavilovia formosa (Stev.) Fed. And the phylogeny of related legume genera
AU - Shatskaya, N. V.
AU - Bogdanova, V. S.
AU - Kosterin, O. E.
AU - Vasiliev, G. V.
AU - Kimeklis, A. K.
AU - Andronov, E. E.
AU - Provorov, N. A.
PY - 2019/8/1
Y1 - 2019/8/1
N2 - The plastid and mitochondrial genomes of Vavilovia formosa (Stev.) Fed. were assembled on the base of the data of high-throughput sequencing of DNA isolated from a sample from North Osetia, Russia, using Illumina and PacBio platforms. The long PacBio reads were sufficient for reliable assembling organellar genomes while the short Illumina reads obtained from total DNA were unacceptable for this purpose because of substantial contamination by nuclear sequences. The organellar genomes were circular DNA molecules; the genome of mitochondria was represented by two circular chromosomes. A phylogenetic analysis on the basis of plastid genomes available in public databases was performed for some representatives of the tribes Fabeae, Trifolieae and Cicereae. As was expected, the V. formosa branch proved to be sister to the Pisum branch, and the tribe Fabeae was monophyletic. The position of Trifolium L. appeared sensitive to the phylogeny reconstruction method, either clustering with Fabeae or with the genera Medicago L., Trigonella L. and Melilotus Mill., but the internodes between successive divergences were short in all cases, suggesting that the radiation of Trifolium, other Trifolieae and Fabeae was fast, occurring within a small time interval as compared to further evolution of these lineages. The data on the relatedness of the plastid genomes of Trifolium and Fabeae correlate with the similarity of N2-fixing symbionts in these legumes represented by Rhizobium leguminosarum biovars trifolii and viciae, while the symbionts of Medicago, Melilotus and Trigonella belong to the Sinorhizobium meliloti and S. medicae species, which are distant from Rhizobium.
AB - The plastid and mitochondrial genomes of Vavilovia formosa (Stev.) Fed. were assembled on the base of the data of high-throughput sequencing of DNA isolated from a sample from North Osetia, Russia, using Illumina and PacBio platforms. The long PacBio reads were sufficient for reliable assembling organellar genomes while the short Illumina reads obtained from total DNA were unacceptable for this purpose because of substantial contamination by nuclear sequences. The organellar genomes were circular DNA molecules; the genome of mitochondria was represented by two circular chromosomes. A phylogenetic analysis on the basis of plastid genomes available in public databases was performed for some representatives of the tribes Fabeae, Trifolieae and Cicereae. As was expected, the V. formosa branch proved to be sister to the Pisum branch, and the tribe Fabeae was monophyletic. The position of Trifolium L. appeared sensitive to the phylogeny reconstruction method, either clustering with Fabeae or with the genera Medicago L., Trigonella L. and Melilotus Mill., but the internodes between successive divergences were short in all cases, suggesting that the radiation of Trifolium, other Trifolieae and Fabeae was fast, occurring within a small time interval as compared to further evolution of these lineages. The data on the relatedness of the plastid genomes of Trifolium and Fabeae correlate with the similarity of N2-fixing symbionts in these legumes represented by Rhizobium leguminosarum biovars trifolii and viciae, while the symbionts of Medicago, Melilotus and Trigonella belong to the Sinorhizobium meliloti and S. medicae species, which are distant from Rhizobium.
KW - Cicer L.
KW - Cicereae
KW - Crop wild relatives
KW - Fabeae
KW - Lathyrus L.
KW - Lens L.
KW - Medicago L.
KW - Melilotus Mill.
KW - Monophyly
KW - Paraphyly
KW - Pea
KW - Phylogeny
KW - Pisum L.
KW - Plastid genome
KW - Trifolieae
KW - Trifolium L.
KW - Trigonella L.
KW - Vavilovia A. Fedorov
KW - Vavilovia formosa (Stev.) Fed.
KW - Vicia L.
KW - paraphyly
KW - pea
KW - Pisum L
KW - plastid genome
KW - NODULES
KW - monophyly
KW - crop wild relatives
KW - phylogeny
UR - http://www.scopus.com/inward/record.url?scp=85081983169&partnerID=8YFLogxK
U2 - 10.18699/VJ19.574
DO - 10.18699/VJ19.574
M3 - Review article
AN - SCOPUS:85081983169
VL - 23
SP - 972
EP - 980
JO - Вавиловский журнал генетики и селекции
JF - Вавиловский журнал генетики и селекции
SN - 2500-0462
IS - 8
ER -
ID: 23877936