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Processing of High-Speed Imaging Data with Galaxy and Cwltool. / Baranov, Ilya; Gorodnichev, Maxim; Starinskiy, Sergey et al.

Lecture Notes in Computer Science. Vol. 16196 Springer, 2026. p. 48-63 4 (Lecture Notes in Computer Science; Vol. 16196 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

Harvard

Baranov, I, Gorodnichev, M, Starinskiy, S, Miskiv, N & Starinskaya, E 2026, Processing of High-Speed Imaging Data with Galaxy and Cwltool. in Lecture Notes in Computer Science. vol. 16196, 4, Lecture Notes in Computer Science, vol. 16196 LNCS, Springer, pp. 48-63, 11th Russian Supercomputing Days, Москва, Russian Federation, 29.09.2025. https://doi.org/10.1007/978-3-032-13127-0_4

APA

Baranov, I., Gorodnichev, M., Starinskiy, S., Miskiv, N., & Starinskaya, E. (2026). Processing of High-Speed Imaging Data with Galaxy and Cwltool. In Lecture Notes in Computer Science (Vol. 16196, pp. 48-63). [4] (Lecture Notes in Computer Science; Vol. 16196 LNCS). Springer. https://doi.org/10.1007/978-3-032-13127-0_4

Vancouver

Baranov I, Gorodnichev M, Starinskiy S, Miskiv N, Starinskaya E. Processing of High-Speed Imaging Data with Galaxy and Cwltool. In Lecture Notes in Computer Science. Vol. 16196. Springer. 2026. p. 48-63. 4. (Lecture Notes in Computer Science). doi: 10.1007/978-3-032-13127-0_4

Author

Baranov, Ilya ; Gorodnichev, Maxim ; Starinskiy, Sergey et al. / Processing of High-Speed Imaging Data with Galaxy and Cwltool. Lecture Notes in Computer Science. Vol. 16196 Springer, 2026. pp. 48-63 (Lecture Notes in Computer Science).

BibTeX

@inproceedings{ae5641ece41b4823ba391f9196b2dad3,
title = "Processing of High-Speed Imaging Data with Galaxy and Cwltool",
abstract = "A practical comparative analysis of two workflow management systems is presented: the Galaxy cloud platform and cwltool—a reference Common Workflow Language implementation. Using high-speed imaging of droplet dynamics as a benchmark application, we demonstrate that while both platforms successfully process large-scale image datasets (thousands of frames per experiment), they differ significantly in nonfunctional properties critical for platform selection. The Galaxy platform provides an integrated cloud-based collaborative environment with resource management and visual workflow composition, while cwltool demonstrates superior computational efficiency (2x faster average processing time) on identical hardware configuration.",
author = "Ilya Baranov and Maxim Gorodnichev and Sergey Starinskiy and Nikolay Miskiv and Elena Starinskaya",
note = "Baranov, I., Gorodnichev, M., Starinskiy, S., Miskiv, N., Starinskaya, E. (2026). Processing of High-Speed Imaging Data with Galaxy and Cwltool. In: Voevodin, V., Antonov, A., Nikitenko, D. (eds) Supercomputing. RuSCDays 2025. Lecture Notes in Computer Science, vol 16196. Springer, Cham. https://doi.org/10.1007/978-3-032-13127-0_4 The study of workflow management systems is carried out under the state assignment of ICM&GM SB RAS (FWNM-2025-0005). We thank IT SB RAS for providing the experimental data. The experimental study of droplet-surface interactions was carried out within the framework of the state assignment of the IT SB RAS (No. 121031800217-8). The surfaces were manufactured within the framework of the state assignment of the IT SB RAS (No. 121031800214-7).; 11th Russian Supercomputing Days, RuSCDays 2025 ; Conference date: 29-09-2025 Through 30-09-2025",
year = "2026",
month = jan,
day = "2",
doi = "10.1007/978-3-032-13127-0_4",
language = "English",
isbn = "978-3-032-13126-3",
volume = "16196",
series = "Lecture Notes in Computer Science",
publisher = "Springer",
pages = "48--63",
booktitle = "Lecture Notes in Computer Science",
address = "United States",

}

RIS

TY - GEN

T1 - Processing of High-Speed Imaging Data with Galaxy and Cwltool

AU - Baranov, Ilya

AU - Gorodnichev, Maxim

AU - Starinskiy, Sergey

AU - Miskiv, Nikolay

AU - Starinskaya, Elena

N1 - Conference code: 11

PY - 2026/1/2

Y1 - 2026/1/2

N2 - A practical comparative analysis of two workflow management systems is presented: the Galaxy cloud platform and cwltool—a reference Common Workflow Language implementation. Using high-speed imaging of droplet dynamics as a benchmark application, we demonstrate that while both platforms successfully process large-scale image datasets (thousands of frames per experiment), they differ significantly in nonfunctional properties critical for platform selection. The Galaxy platform provides an integrated cloud-based collaborative environment with resource management and visual workflow composition, while cwltool demonstrates superior computational efficiency (2x faster average processing time) on identical hardware configuration.

AB - A practical comparative analysis of two workflow management systems is presented: the Galaxy cloud platform and cwltool—a reference Common Workflow Language implementation. Using high-speed imaging of droplet dynamics as a benchmark application, we demonstrate that while both platforms successfully process large-scale image datasets (thousands of frames per experiment), they differ significantly in nonfunctional properties critical for platform selection. The Galaxy platform provides an integrated cloud-based collaborative environment with resource management and visual workflow composition, while cwltool demonstrates superior computational efficiency (2x faster average processing time) on identical hardware configuration.

UR - https://www.scopus.com/pages/publications/105028252233

UR - https://www.mendeley.com/catalogue/4bae70ff-99cd-39b5-b007-1908c71b8b0b/

U2 - 10.1007/978-3-032-13127-0_4

DO - 10.1007/978-3-032-13127-0_4

M3 - Conference contribution

SN - 978-3-032-13126-3

VL - 16196

T3 - Lecture Notes in Computer Science

SP - 48

EP - 63

BT - Lecture Notes in Computer Science

PB - Springer

T2 - 11th Russian Supercomputing Days

Y2 - 29 September 2025 through 30 September 2025

ER -

ID: 74289737