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Diversity of Archaea in Bottom Sediments of the Discharge Areas With Oil- and Gas-Bearing Fluids in Lake Baikal. / Lomakina, Anna V.; Mamaeva, Elena V.; Galachyants, Yuri P. et al.

In: Geomicrobiology Journal, Vol. 35, No. 1, 02.01.2018, p. 50-63.

Research output: Contribution to journalArticlepeer-review

Harvard

Lomakina, AV, Mamaeva, EV, Galachyants, YP, Petrova, DP, Pogodaeva, TV, Shubenkova, OV, Khabuev, AV, Morozov, IV & Zemskaya, TI 2018, 'Diversity of Archaea in Bottom Sediments of the Discharge Areas With Oil- and Gas-Bearing Fluids in Lake Baikal', Geomicrobiology Journal, vol. 35, no. 1, pp. 50-63. https://doi.org/10.1080/01490451.2017.1315195

APA

Lomakina, A. V., Mamaeva, E. V., Galachyants, Y. P., Petrova, D. P., Pogodaeva, T. V., Shubenkova, O. V., Khabuev, A. V., Morozov, I. V., & Zemskaya, T. I. (2018). Diversity of Archaea in Bottom Sediments of the Discharge Areas With Oil- and Gas-Bearing Fluids in Lake Baikal. Geomicrobiology Journal, 35(1), 50-63. https://doi.org/10.1080/01490451.2017.1315195

Vancouver

Lomakina AV, Mamaeva EV, Galachyants YP, Petrova DP, Pogodaeva TV, Shubenkova OV et al. Diversity of Archaea in Bottom Sediments of the Discharge Areas With Oil- and Gas-Bearing Fluids in Lake Baikal. Geomicrobiology Journal. 2018 Jan 2;35(1):50-63. doi: 10.1080/01490451.2017.1315195

Author

Lomakina, Anna V. ; Mamaeva, Elena V. ; Galachyants, Yuri P. et al. / Diversity of Archaea in Bottom Sediments of the Discharge Areas With Oil- and Gas-Bearing Fluids in Lake Baikal. In: Geomicrobiology Journal. 2018 ; Vol. 35, No. 1. pp. 50-63.

BibTeX

@article{aa846f252d044af1b518d43db14823e4,
title = "Diversity of Archaea in Bottom Sediments of the Discharge Areas With Oil- and Gas-Bearing Fluids in Lake Baikal",
abstract = "Using massively parallel sequencing (the Roche 454 platform) we have studied the diversity of archaeal 16S rRNA gene sequences in oxic and anoxic sediments at six sites in Lake Baikal with oil- and gas-bearing fluids discharge. Archaeal communities appeared to be represented mainly by five phyla: Euryarchaeota, Crenarchaeota, Thaumarchaeota, Bathyarchaeota (miscellaneous Crenarchaeotic group), and Woesearchaeota (deep sea hydrothermal vent group 6). Among them we detected sequences of methanogens of the orders Methanomicrobiales, Methanosarsinales, Methanococcales, as well as representatives of the following uncultured archaeal lineages: Group C3, Marine Benthic Group D, and Terrestrial Miscellaneous Group. We have also identified sequences of ammonia-oxidizing archaea of the phyla Crenarchaeota and Thaumarchaeota. Phylogenetic analysis showed the presence ANME-2d-related sequences. However, the analysis of mcrA genes libraries has not revealed typical representatives of ANME groups. Comparison of amplicon libraries 16S rRNA gene fragments from different samples proved the widespread presence of previously detected Baikal archaeal lineages, which are members of the phylum Crenarchaeota and Thaumarchaeota (formerly Group C3 of Crenarchaeota).",
keywords = "Archaeal communities, Baikal archaeal lineages and ANME-2d, Lake Baikal, oil and methane seeps, pyrosequencing",
author = "Lomakina, {Anna V.} and Mamaeva, {Elena V.} and Galachyants, {Yuri P.} and Petrova, {Darya P.} and Pogodaeva, {Tatyana V.} and Shubenkova, {Olga V.} and Khabuev, {Andrey V.} and Morozov, {Igor V.} and Zemskaya, {Tamara I.}",
note = "Publisher Copyright: {\textcopyright} 2017 Taylor & Francis Group, LLC.",
year = "2018",
month = jan,
day = "2",
doi = "10.1080/01490451.2017.1315195",
language = "English",
volume = "35",
pages = "50--63",
journal = "Geomicrobiology Journal",
issn = "0149-0451",
publisher = "Taylor and Francis Ltd.",
number = "1",

}

RIS

TY - JOUR

T1 - Diversity of Archaea in Bottom Sediments of the Discharge Areas With Oil- and Gas-Bearing Fluids in Lake Baikal

AU - Lomakina, Anna V.

AU - Mamaeva, Elena V.

AU - Galachyants, Yuri P.

AU - Petrova, Darya P.

AU - Pogodaeva, Tatyana V.

AU - Shubenkova, Olga V.

AU - Khabuev, Andrey V.

AU - Morozov, Igor V.

AU - Zemskaya, Tamara I.

N1 - Publisher Copyright: © 2017 Taylor & Francis Group, LLC.

PY - 2018/1/2

Y1 - 2018/1/2

N2 - Using massively parallel sequencing (the Roche 454 platform) we have studied the diversity of archaeal 16S rRNA gene sequences in oxic and anoxic sediments at six sites in Lake Baikal with oil- and gas-bearing fluids discharge. Archaeal communities appeared to be represented mainly by five phyla: Euryarchaeota, Crenarchaeota, Thaumarchaeota, Bathyarchaeota (miscellaneous Crenarchaeotic group), and Woesearchaeota (deep sea hydrothermal vent group 6). Among them we detected sequences of methanogens of the orders Methanomicrobiales, Methanosarsinales, Methanococcales, as well as representatives of the following uncultured archaeal lineages: Group C3, Marine Benthic Group D, and Terrestrial Miscellaneous Group. We have also identified sequences of ammonia-oxidizing archaea of the phyla Crenarchaeota and Thaumarchaeota. Phylogenetic analysis showed the presence ANME-2d-related sequences. However, the analysis of mcrA genes libraries has not revealed typical representatives of ANME groups. Comparison of amplicon libraries 16S rRNA gene fragments from different samples proved the widespread presence of previously detected Baikal archaeal lineages, which are members of the phylum Crenarchaeota and Thaumarchaeota (formerly Group C3 of Crenarchaeota).

AB - Using massively parallel sequencing (the Roche 454 platform) we have studied the diversity of archaeal 16S rRNA gene sequences in oxic and anoxic sediments at six sites in Lake Baikal with oil- and gas-bearing fluids discharge. Archaeal communities appeared to be represented mainly by five phyla: Euryarchaeota, Crenarchaeota, Thaumarchaeota, Bathyarchaeota (miscellaneous Crenarchaeotic group), and Woesearchaeota (deep sea hydrothermal vent group 6). Among them we detected sequences of methanogens of the orders Methanomicrobiales, Methanosarsinales, Methanococcales, as well as representatives of the following uncultured archaeal lineages: Group C3, Marine Benthic Group D, and Terrestrial Miscellaneous Group. We have also identified sequences of ammonia-oxidizing archaea of the phyla Crenarchaeota and Thaumarchaeota. Phylogenetic analysis showed the presence ANME-2d-related sequences. However, the analysis of mcrA genes libraries has not revealed typical representatives of ANME groups. Comparison of amplicon libraries 16S rRNA gene fragments from different samples proved the widespread presence of previously detected Baikal archaeal lineages, which are members of the phylum Crenarchaeota and Thaumarchaeota (formerly Group C3 of Crenarchaeota).

KW - Archaeal communities

KW - Baikal archaeal lineages and ANME-2d

KW - Lake Baikal

KW - oil and methane seeps

KW - pyrosequencing

UR - http://www.scopus.com/inward/record.url?scp=85019252057&partnerID=8YFLogxK

U2 - 10.1080/01490451.2017.1315195

DO - 10.1080/01490451.2017.1315195

M3 - Article

AN - SCOPUS:85019252057

VL - 35

SP - 50

EP - 63

JO - Geomicrobiology Journal

JF - Geomicrobiology Journal

SN - 0149-0451

IS - 1

ER -

ID: 9444799