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  1. 2025

  2. Физиологическая химия. Химические аспекты физиологических процессов. Часть 7. Молекулярные механизмы межклеточной химической сигнализации

    Новопашина, Д. С., Кудряшова, Н. В., Лавриненко, В. А. & Мызина, С. Д., 2025, Новосибирск: ИПЦ НГУ. 74 p.

    Research output: Book/Report › Teaching manual › peer-review

  3. 2024

  4. CRISPR/Cas System Photocontrolled at the Guide RNA Level

    Sakovina, L. V., Gorlenko, E. S. & Novopashina, D. S., 20 Dec 2024, In: Biophysics (Russian Federation). 69, 3, p. 349-358 10 p.

    Research output: Contribution to journal › Article › peer-review

  5. Photocleavable Guide crRNAs for a Light-Controllable CRISPR/Cas9 System

    Sakovina, L., Vokhtantsev, I., Akhmetova, E., Vorobyeva, M., Vorobjev, P., Zharkov, D. O. & Novopashina, D., 19 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12392.

    Research output: Contribution to journal › Article › peer-review

  6. Kinetic Features of Degradation of R-Loops by RNase H1 from Escherichia coli

    Kuznetsova, A. A., Kosarev, I. A., Timofeyeva, N. A., Novopashina, D. S. & Kuznetsov, N. A., 15 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12263.

    Research output: Contribution to journal › Article › peer-review

  7. Role of R-Loop Structure in Efficacy of RNA Elongation Synthesis by RNA Polymerase from Escherichia coli

    Timofeyeva, N. A., Tsoi, E. I., Novopashina, D. S., Kuznetsova, A. A. & Kuznetsov, N. A., 14 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12190.

    Research output: Contribution to journal › Article › peer-review

  8. An Approach to the Synthesis of Cyclic Photocleavable RNA for Photoactivatable CRISPR/Cas9 System

    Ivanskaya, E. V., Meschaninova, M. I., Vorobyeva, M. A., Zharkov, D. O. & Novopashina, D. S., Oct 2024, In: Russian Journal of Bioorganic Chemistry. 50, 5, p. 1807-1821 15 p.

    Research output: Contribution to journal › Article › peer-review

  9. Photocleavable Guide RNA for Photocontrolled CRISPR/Cas9 System

    Akhmetova, E. A., Vokhtantsev, I. P., Meschaninova, M. I., Vorobyeva, M. A., Zharkov, D. O. & Novopashina, D. S., Aug 2024, In: Russian Journal of Bioorganic Chemistry. 50, 4, p. 1314-1324 11 p., 12.

    Research output: Contribution to journal › Article › peer-review

  10. SNP-Associated Substitutions of Amino Acid Residues in the dNTP Selection Subdomain Decrease Polβ Polymerase Activity

    Kladova, O. A., Tyugashev, T. E., Miroshnikov, A. A., Novopashina, D. S., Kuznetsov, N. A. & Kuznetsova, A. A., 2 May 2024, In: Biomolecules. 14, 5, 19 p., 547.

    Research output: Contribution to journal › Article › peer-review

  11. The Impact of SNP-Induced Amino Acid Substitutions L19P and G66R in the dRP-Lyase Domain of Human DNA Polymerase β on Enzyme Activities

    Kladova, O. A., Tyugashev, T. E., Yakimov, D. V., Mikushina, E. S., Novopashina, D. S., Kuznetsov, N. A. & Kuznetsova, A. A., 10 Apr 2024, In: International Journal of Molecular Sciences. 25, 8, 4182.

    Research output: Contribution to journal › Article › peer-review

  12. The approaches for CRISPR/Cas9 regulation on the guide RNA level

    Новопашина, Д. С., Саковина, Л. В., Горленко, Е. С., Должикова, О. А. & Мещанинова, М. И., 2024, BIOINFORMATICS OF GENOME REGULATION AND STRUCTURE / SYSTEMS BIOLOGY: Abstracts of the Fourteenth International Multiconference. Новосибирск: Институт цитологии и генетики СО РАН, p. 1724 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research

  13. Механизмы узнавания 5-метилцитозина ферментами системы активного эпигенетического деметилирования

    Петрова, Д. В., Новопашина, Д. С., Кузнецова, А. А., Кузнецов, Н. А., Пермякова, Н. В., Грин, И. Р. & Жарков, Д. О., 2024, ФИЗИКО-ХИМИЧЕСКАЯ БИОЛОГИЯ: Материалы V всероссийской конференции, приуроченной к 40-летию ИХБФМ СО РАН. Новосибирск: ООО "Офсет ТМ", p. 25

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research

  14. Модифицированные фоторасщепляемые направляющие РНК для создания регулируемой системы CRISPR/Cas9

    Саковина, Л. В., Горленко, Е. С., Жарков, Д. О. & Новопашина, Д. С., 2024, p. 68-69. 2 p.

    Research output: Contribution to conference › Abstract

  15. Регуляция активности систем CRISPR/Cas9 на уровне направляющих РНК

    Новопашина, Д. С., Горленко, Е. С., Должикова, О. А., Саковина, Л. В. & Мещанинова, М. И., 2024, ФИЗИКО-ХИМИЧЕСКАЯ БИОЛОГИЯ: Материалы V всероссийской конференции, приуроченной к 40-летию ИХБФМ СО РАН. Новосибирск: ООО "Офсет ТМ", p. 70

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research

  16. Фоторегулируемые на уровне направляющей РНК системы CRISPR/Cas

    Саковина, Л. В., Горленко, Е. С. & Новопашина, Д. С., 2024, In: Биофизика. 69, 3, p. 421-431 11 p.

    Research output: Contribution to journal › Article › peer-review

  17. Фоторегулируемые системы CRISPR/Cas9 с использованием фоточувствительных направляющих РНК

    Горленко, Е. С., Саковина, Л. В. & Новопашина, Д. С., 2024, ФИЗИКО-ХИМИЧЕСКАЯ БИОЛОГИЯ: Материалы V всероссийской конференции, приуроченной к 40-летию ИХБФМ СО РАН. Новосибирск: ООО "Офсет ТМ", p. 87

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research

  18. 2023

  19. Inner Amino Acid Contacts Are Key Factors of Multistage Structural Rearrangements of DNA and Affect Substrate Specificity of Apurinic/Apyrimidinic Endonuclease APE1

    Bulygin, A. A., Syryamina, V. N., Kuznetsova, A. A., Novopashina, D. S., Dzuba, S. A. & Kuznetsov, N. A., 14 Jul 2023, In: International Journal of Molecular Sciences. 24, 14, 11474.

    Research output: Contribution to journal › Article › peer-review

  20. The Activity of Natural Polymorphic Variants of Human DNA Polymerase β Having an Amino Acid Substitution in the Transferase Domain

    Kladova, O. A., Tyugashev, T. E., Mikushina, E. S., Kuznetsov, N. A., Novopashina, D. S. & Kuznetsova, A. A., 2 May 2023, In: Cells. 12, 9, 1300.

    Research output: Contribution to journal › Article › peer-review

  21. Aptamers for Addressed Boron Delivery in BNCT: Effect of Boron Cluster Attachment Site on Functional Activity

    Novopashina, D. S., Dymova, M. A., Davydova, A. S., Meschaninova, M. I., Malysheva, D. O., Kuligina, E. V., Richter, V. A., Kolesnikov, I. A., Taskaev, S. Y. & Vorobyeva, M. A., Jan 2023, In: International Journal of Molecular Sciences. 24, 1, 306.

    Research output: Contribution to journal › Article › peer-review

  22. 2022

  23. Improving Stability and Specificity of CRISPR/Cas9 System by Selective Modification of Guide RNAs with 2'-fluoro and Locked Nucleic Acid Nucleotides

    Sakovina, L., Vokhtantsev, I., Vorobyeva, M., Vorobyev, P. & Novopashina, D., 3 Nov 2022, In: International Journal of Molecular Sciences. 23, 21, 13460.

    Research output: Contribution to journal › Article › peer-review

  24. The mechanism of damage recognition by apurinic/apyrimidinic endonuclease Nfo from Escherichia coli

    Senchurova, S. I., Syryamina, V. N., Kuznetsova, A. A., Novopashina, D. S., Ishchenko, A. A., Saparbaev, M., Dzuba, S. A., Fedorova, O. S. & Kuznetsov, N. A., Nov 2022, In: Biochimica et Biophysica Acta - General Subjects. 1866, 11, 130216.

    Research output: Contribution to journal › Article › peer-review

  25. Photocaged Small Interfering RNA

    Akhmetova, E. A., Kim, D. V., Dome, A. S., Meschaninova, M. I. & Novopashina, D. S., Oct 2022, In: Russian Journal of Bioorganic Chemistry. 48, 5, p. 1036-1042 7 p.

    Research output: Contribution to journal › Article › peer-review

  26. Comparative Analysis of Exo-and Endonuclease Activities of APE1-like Enzymes

    Davletgildeeva, A. T., Kuznetsova, A. A., Novopashina, D. S., Ishchenko, A. A., Saparbaev, M., Fedorova, O. S. & Kuznetsov, N. A., 1 Mar 2022, In: International Journal of Molecular Sciences. 23, 5, 2869.

    Research output: Contribution to journal › Article › peer-review

  27. Модифицированные направляющие РНК для создания специфичной и регулируемой системы CRISPR/Cas9

    Саковина, Л. В., Вохтанцев, И. П. & Новопашина, Д. С., 2022, p. 656. 1 p.

    Research output: Contribution to conference › Abstract

  28. Циклические направляющие РНК для создания фотоактивируемой системы CRISPR/Cas9

    Иванская, Е. В., Саковина, Л. В., Горленко, Е. С., Вохтанцев, И. П. & Новопашина, Д. С., 2022, p. 160. 1 p.

    Research output: Contribution to conference › Abstract

  29. Циклические направляющие РНК как компоненты фоторегулируемой системы геномного редактирования CRISPR/Cas9

    Иванская, Е. В., Саковина, Л. В., Горленко, Е. С., Вохтанцев, И. П. & Новопашина, Д. С., 2022, p. 182. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  30. 2021

  31. Photoactivatable nanocrispr/cas9 system based on crrna reversibly immobilized on carbon nanoparticles

    Semikolenova, O., Sakovina, L., Akhmetova, E., Kim, D., Vokhtantsev, I., Golyshev, V., Vorobyeva, M., Novopashin, S. & Novopashina, D., 1 Oct 2021, In: International Journal of Molecular Sciences. 22, 20, 10919.

    Research output: Contribution to journal › Article › peer-review

  32. 2’-Модифицированные направляющие РНК как компоненты системы геномного редактирования CRISPR/Cas9

    Саковина, Л. В., Вохтанцев, И. П. & Новопашина, Д. С., Oct 2021, p. 332. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  33. Tumor cell‐specific 2′‐fluoro rna aptamer conjugated with closo‐dodecaborate as a potential agent for boron neutron capture therapy

    Vorobyeva, M. A., Dymova, M. A., Novopashina, D. S., Kuligina, E. V., Timoshenko, V. V., Kolesnikov, I. A., Taskaev, S. Y., Richter, V. A. & Venyaminova, A. G., 2 Jul 2021, In: International Journal of Molecular Sciences. 22, 14, 7326.

    Research output: Contribution to journal › Article › peer-review

  34. Comparative study of PyA-cluster system and excimer forming oligonucleotide probes for the detection of miRNA

    Semikolenova, O., Lee, H. J., Kim, B. H., Venyaminova, A. & Novopashina, D., Jul 2021, In: FEBS Open Bio. 11, p. 241-241 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  35. Novel approach to the delivery into the cells and light-activation of the guide RNA for the genome editing CRISPR/Cas9 system

    Яковлев, А., Ахметова, Е., Данилин, Н. А., Семиколенова, О. А., Вохтанцев, И. П., Ким, Д. В., Жарков, Д. О., Веньяминова, А. Г. & Новопашина, Д. С., Jul 2021, p. 122. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  36. The prospective antibacterial conjugates of modified oligonucleotides

    Danilin, N., Novopashina, D., Matveyev, A., Bardasheva, A., Tikunova, N., Kupryushkin, M., Pyshnyi, D. & Venyaminova, A., Jul 2021, In: FEBS Open Bio. 11, p. 307-307 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  37. Мутационный и кинетический анализ эндорибонуклеазной активности АРЕ1

    Kuznetsova, A. A., Gavrilova, A. A., Novopashina, D. S., Fedorova, O. S. & Kuznetsov, N. A., 20 Apr 2021, In: Molekuliarnaia biologiia. 55, 2, p. 243-257 15 p., 6.

    Research output: Contribution to journal › Article › peer-review

  38. Conjugates of RNase P-Guiding Oligonucleotides with Oligo(N-Methylpyrrole) as Prospective Antibacterial Agents

    Danilin, N. A., Matveev, A. L., Tikunova, N. V., Venyaminova, A. G. & Novopashina, D. S., Mar 2021, In: Russian Journal of Bioorganic Chemistry. 47, 2, p. 469-477 9 p.

    Research output: Contribution to journal › Article › peer-review

  39. Mutational and Kinetic Analysis of APE1 Endoribonuclease Activity

    Kuznetsova, A. A., Gavrilova, A. A., Novopashina, D. S., Fedorova, O. S. & Kuznetsov, N. A., Mar 2021, In: Molecular Biology. 55, 2, p. 211-224 14 p., 5.

    Research output: Contribution to journal › Article › peer-review

  40. New Two-Component Pyrene Probes Based on Oligo(2'-O-Methylribonucleotides) for microRNA Detection

    Semikolenova, O. A., Golyshev, V. M., Kim, B. H., Venyaminova, A. G. & Novopashina, D. S., Mar 2021, In: Russian Journal of Bioorganic Chemistry. 47, 2, p. 432-440 9 p.

    Research output: Contribution to journal › Article › peer-review

  41. Photoactivatable CRISPR/Cas9 System

    Akhmetova, E. A., Golyshev, V. M., Vokhtantcev, I. P., Meschaninova, M. I., Venyaminova, A. G. & Novopashina, D. S., Mar 2021, In: Russian Journal of Bioorganic Chemistry. 47, 2, p. 496-504 9 p.

    Research output: Contribution to journal › Article › peer-review

  42. 2020

  43. 5′-Monopyrene and 5′-Bispyrene 2′-O-methyl RNA Probes for Detection of RNA Mismatches

    Novopashina, D. S., Semikolenova, O. A. & Venyaminova, A. G., 1 Jan 2020, Nucleic Acid Detection and Structural Investigations. Astakhova, K. & Bukhari, S. A. (eds.). Humana Press, Vol. 2063. p. 45-56 12 p. (Methods in Molecular Biology; vol. 2063).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  44. 2019

  45. Novel Convenient Approach to the Solid-Phase Synthesis of Oligonucleotide Conjugates

    Meschaninova, M. I., Novopashina, D. S., Semikolenova, O. A., Silnikov, V. N. & Venyaminova, A. G., 22 Nov 2019, In: Molecules (Basel, Switzerland). 24, 23, 14 p., 4266.

    Research output: Contribution to journal › Article › peer-review

  46. RNase P-Guiding Peptide Conjugates of Oligo(2'-O-methylribonucleotides) as Prospective Antibacterial Agents

    Danilin, N. A., Koroleva, L. S., Novopashina, D. S. & Venyaminova, A. G., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 825-832 8 p.

    Research output: Contribution to journal › Article › peer-review

  47. Novel peptide conjugates of modified oligonucleotides for inhibition of bacterial RNase P

    Novopashina, D., Vorobyeva, M., Nazarov, A., Davydova, A., Danilin, N., Koroleva, L., Matveev, A., Bardasheva, A., Tikunova, N., Kupryushkin, M., Pyshnyi, D., Altman, S. & Venyaminova, A., 19 Jul 2019, In: Frontiers in Pharmacology. 10, 8 p., 813.

    Research output: Contribution to journal › Article › peer-review

  48. Photocleavable guide RNAs for controllable genome editing with CRISPR/Cas9 system

    Novopashina, D., Khabardina, E., Vokhtantsev, I., Kim, D., Venyaminova, A. & Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 400-400 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  49. 2018

  50. Modified Oligonucleotides for Guiding RNA Cleavage Using Bacterial RNase P

    Novopashina, D. S., Nazarov, A. S., Vorobjeva, M. A., Kuprushkin, M. S., Davydova, A. S., Lomzov, A. A., Pyshnyi, D. V., Altman, S. & Venyaminova, A. G., 1 Nov 2018, In: Molecular Biology. 52, 6, p. 905-912 8 p.

    Research output: Contribution to journal › Article › peer-review

  51. Modified Oligonucleotides for Guiding RNA Cleavage Using Bacterial RNase P

    Novopashina, D. S., Nazarov, A. S., Vorobjeva, M. A., Kuprushkin, M. S., Davydova, A. S., Lomzov, A. A., Pyshnyi, D. V., Altman, S. & Venyaminova, A. G., 1 Nov 2018, In: Molekuliarnaia biologiia. 52, 6, p. 1045-1054 10 p.

    Research output: Contribution to journal › Article › peer-review

  52. 2017

  53. Rational design and studies of excimer forming novel dual probes to target RNA

    Krasheninina, O. A., Lomzov, A. A., Fishman, V. S., Novopashina, D. S. & Venyaminova, A. G., 1 Apr 2017, In: Bioorganic and Medicinal Chemistry. 25, 7, p. 2244-2250 7 p.

    Research output: Contribution to journal › Article › peer-review

  54. Non-covalent anchoring of oligonucleotides on single-walled carbon nanotubes via short bioreducible linker

    Permyakova, E. S., Novopashina, D. S., Venyaminova, A. G. & Apartsin, E. K., 1 Jan 2017, In: RSC Advances. 7, 46, p. 29212-29217 6 p.

    Research output: Contribution to journal › Article › peer-review

ID: 3441026