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  1. 2025

  2. New Sights into Bioinformatics of Gene Regulations and Structure

    Anashkina, A. A., Orlova, N. G., Kolchanov, N. A. & Orlov, Y. L., 4 Jul 2025, In: International Journal of Molecular Sciences. 26, 13

    Research output: Contribution to journal › Article › peer-review

  3. Special Issue “25 Anniversary of Bioinformatics of Genome Regulation and Structure Conference Series”

    Orlov, Y. L., Orlova, N. G., Chen, M. & Kolchanov, N. A., 4 Jul 2025, In: International Journal of Molecular Sciences. 26, 13

    Research output: Contribution to journal › Article › peer-review

  4. 2024

  5. Computational identification of promising genetic markers associated with molecular mechanisms of reduced rice resistance to Rhizoctonia solani under excess nitrogen fertilization using gene network reconstruction and analysis methods

    Antropova, E. A., Volyanskaya, A. R., Adamovskaya, A. V., Demenkov, P. S., Yatsyk, I. V., Ivanisenko, T. V., Orlov, Y. L., Haoyu, C., Chen, M. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 960-973 14 p.

    Research output: Contribution to journal › Article › peer-review

  6. Mutation in of palindromic sequences of coronavirus genome

    Mitić, N. S., Kapunac, S., Beljanski, M. V., Дергилев, А. И. & Орлов, Ю. Л., Aug 2024, Bioinformatics of Genome Regulation and Structure Systems Biology (BGRS/SB-2024): The 14th International Multiconference (05-10 August 2024, Novosibirsk, Russia). Новосибирск: Институт цитологии и генетики СО РАН, p. 2196-2197 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  7. SmartCrop cognitive platform: modules for automatic knowledge extraction from scientific publications, patents and factual databases for reconstruction and analysis of gene networks of stress response in rice and wheat

    Иванисенко, В. А., Деменков, П. С., Иванисенко, Т. В., Антропова, Е. А., Волянская, А. Р., Зубаирова, У. С., Макарова, А-Л. А., Орлов, Ю. Л. & Chen, M., Aug 2024, Bioinformatics of Genome Regulation and Structure Systems Biology (BGRS/SB-2024): The 14th International Multiconference (05-10 August 2024, Novosibirsk, Russia). Новосибирск: Институт цитологии и генетики СО РАН, p. 2188-2190 3 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  8. A Principal Components Analysis and Functional Annotation of Differentially Expressed Genes in Brain Regions of Gray Rats Selected for Tame or Aggressive Behavior

    Chadaeva, I., Kozhemyakina, R., Shikhevich, S., Bogomolov, A., Kondratyuk, E., Ощепков, Д. Ю., Orlov, Y. L. & Markel, A. L., May 2024, In: International Journal of Molecular Sciences. 25, 9, 16 p., 4613.

    Research output: Contribution to journal › Article › peer-review

  9. Unveiling the methionine cycle: a key metabolic signature and NR4A2 as a methionine-responsive oncogene in esophageal squamous cell carcinoma

    Jin, X., Liu, L., Liu, D., Wu, J., Wang, C., Wang, S., Wang, F., Yu, G., Jin, X., Xue, Y. W., Jiang, D., Ni, Y., Yang, X., Wang, M. S., Wang, Z. W., Orlov, Y. L., Jia, W., Melino, G., Liu, J. B. & Chen, W. L., May 2024, In: Cell Death and Differentiation. 31, 5, p. 558-573 16 p.

    Research output: Contribution to journal › Article › peer-review

  10. 2023

  11. Reconstruction and analysis of the gene regulatory network for cell wall function in Arabidopsis thaliana L. leaves in response to water deficit

    Volyanskaya, A. R., Antropova, E. A., Zubairova, U. S., Demenkov, P. S., Venzel, A. S., Orlov, Y. L., Makarova, A. A., Ivanisenko, T. V., Gorshkova, T. A., Aglyamova, A. R., Kolchanov, N. A., Chen, M. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1031-1041 11 p.

    Research output: Contribution to journal › Article › peer-review

  12. BGRS: bioinformatics of genome regulation and data integration

    Orlov, Y. L., Chen, M., Kolchanov, N. A. & Hofestädt, R., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 20230032.

    Research output: Contribution to journal › Article › peer-review

  13. Research Topics of the Bioinformatics of Gene Regulation

    Orlov, Y. L., Anashkina, A. A., Kumeiko, V. V., Chen, M. & Kolchanov, N. A., 15 May 2023, In: International Journal of Molecular Sciences. 24, 10, 8774.

    Research output: Contribution to journal › Article › peer-review

  14. 2022

  15. Editorial: High-Throughput Sequencing-Based Investigation of Chronic Disease Markers and Mechanisms

    Orlov, Y. L., Chen, W. L., Sekacheva, M. I., Cai, G. & Li, H., 21 Jun 2022, In: Frontiers in Genetics. 13, 922206.

    Research output: Contribution to journal › Editorial › peer-review

  16. Editorial: Association Between Individuals’ Genomic Ancestry and Variation in Disease Susceptibility

    Das, R., Tatarinova, T. V., Galieva, E. R. & Orlov, Y. L., 2 Feb 2022, In: Frontiers in Genetics. 13, 831320.

    Research output: Contribution to journal › Editorial › peer-review

  17. 2021

  18. Statistical estimates of multiple transcription factors binding in the model plant genomes based on ChIP-seq data

    Dergilev, A. I., Orlova, N. G., Dobrovolskaya, O. B. & Orlov, Y. L., 21 Dec 2021, In: Journal of integrative bioinformatics. 19, 1, 12 p.

    Research output: Contribution to journal › Article › peer-review

  19. Editorial: Bioinformatics of Genome Regulation, Volume I

    Orlov, Y. L., Tatarinova, T. V., Oparina, N. Y., Galieva, E. R. & Baranova, A. V., 6 Dec 2021, In: Frontiers in Genetics. 12, 803273.

    Research output: Contribution to journal › Editorial › peer-review

  20. Glioblastoma gene network reconstruction and ontology analysis by online bioinformatics tools

    Gubanova, N. V., Orlova, N. G., Dergilev, A. I., Oparina, N. Y. & Orlov, Y. L., 16 Nov 2021, In: Journal of integrative bioinformatics. 18, 4

    Research output: Contribution to journal › Article › peer-review

  21. Recent trends in cancer genomics and bioinformatics tools development

    Anashkina, A. A., Leberfarb, E. Y. & Orlov, Y. L., 10 Nov 2021, In: International Journal of Molecular Sciences. 22, 22, 12146.

    Research output: Contribution to journal › Editorial › peer-review

  22. Bioinformatics applications to reveal molecular mechanisms of gene expression regulation in model organisms

    Orlov, Y. L., Tatarinova, T. V. & Anashkina, A. A., 1 Nov 2021, In: International Journal of Molecular Sciences. 22, 21, 11973.

    Research output: Contribution to journal › Editorial › peer-review

  23. Life: Computational genomics applications in life sciences

    Orlov, Y. L. & Anashkina, A. A., Nov 2021, In: Life. 11, 11, 1211.

    Research output: Contribution to journal › Editorial › peer-review

  24. Autophagy genes expression profiling in secondary glioblastoma cells transcriptome

    Gubanova, N., Bragin, A., Vasiliev, G., Babenko, V., Ponomarenko, M. & Orlov, Y., Sept 2021, In: Cell death discovery. 7, SUPPL 1, p. 5-5 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  25. Novel ChIP-seq simulating program with superior versatility: isChIP

    Subkhankulova, T., Naumenko, F., Tolmachov, O. E. & Orlov, Y. L., 20 Jul 2021, In: Briefings in Bioinformatics. 22, 4, bbaa352.

    Research output: Contribution to journal › Review article › peer-review

  26. Biodistribution of10 b in glioma orthotopic xenograft mouse model after injection of l-para-boronophenylalanine and sodium borocaptate

    Gubanova, N. V., Tsygankova, A. R., Zavjalov, E. L., Romashchenko, A. V. & Orlov, Y. L., Jul 2021, In: Biomedicines. 9, 7, 722.

    Research output: Contribution to journal › Article › peer-review

  27. Полиморфизм вариантов гена N-ацетилтрансферазы 2 (NAT2) и анализ генной сети

    Tiis, R. P., Osipova, L. P., Galieva, E. R., Lichman, D. V., Voronina, E. N., Melikhova, A. V., Orlov, Y. L. & Filipenko, M. L., May 2021, In: Biomeditsinskaya Khimiya. 67, 3, p. 213-221 9 p., 4.

    Research output: Contribution to journal › Article › peer-review

  28. Реконструкция генной сети болезни Паркинсона для поиска генов-мишеней

    Orlov, Y. L., Galieva, A. G., Orlova, N. G., Ivanova, E. N., Mozyleva, Y. A. & Anashkina, A. A., May 2021, In: Biomeditsinskaya Khimiya. 67, 3, p. 222-230 9 p., 5.

    Research output: Contribution to journal › Article › peer-review

  29. Molecular characteristic of treatment failure clinical isolates of Leishmania major

    Eslami, G., Hatefi, S., Ramezani, V., Tohidfar, M., Churkina, T. V., Orlov, Y. L., Hosseini, S. S., Boozhmehrani, M. J. & Vakili, M., 11 Mar 2021, In: PeerJ. 9, 10969.

    Research output: Contribution to journal › Article › peer-review

  30. Erratum: Correction to: Analyzing a putative enhancer of optic disc morphology (BMC genomic data (2020) 21 Suppl 1 (73))

    Babenko, V. N., Babenko, R. O. & Orlov, Y. N., 4 Feb 2021, In: BMC genomic data. 22, 1, p. 5 1 p.

    Research output: Contribution to journal › Comment/debate › peer-review

  31. In situ dissecting the evolution of gene duplication with different histone modification patterns based on high-throughput data analysis in Arabidopsis thaliana

    Wang, J., Orlov, Y. L., Li, X., Zhou, Y., Liu, Y., Yuan, C. & Chen, M., 5 Jan 2021, In: PeerJ. 9, 19 p., e10426.

    Research output: Contribution to journal › Article › peer-review

  32. Bioinformatics of genome regulation and structure - 2020 papers collection

    Orlov, Y. L., Dobrovolskaya, O. B., Chen, M. & Hofestaedt, R., 2021, In: Journal of integrative bioinformatics. 17, 4, 3 p., 20200038.

    Research output: Contribution to journal › Editorial › peer-review

  33. 2020

  34. Microbiology research at the systems biology and bioinformatics - 2019 (SBB-2019) school

    Orlov, Y. L., Ignatov, A. N., Galieva, E. R. & Dobrovolskaya, O. B., 24 Nov 2020, In: BMC Microbiology. 20, Suppl 2, p. 348 3 p., 348.

    Research output: Contribution to journal › Editorial › peer-review

  35. The rs78378222 prevalence and the copy loss of the protective allele A in the tumor tissue of diffuse large B-cell lymphoma

    Voropaeva, E. N., Orlov, Y. L., Pospelova, T. I., Gurageva, A. A., Voevoda, M. I., Maksimov, V. N., Seregina, O. B. & Churkina, M. I., 12 Nov 2020, In: PeerJ. 8, 14 p., e10335.

    Research output: Contribution to journal › Article › peer-review

  36. Analyzing a putative enhancer of optic disc morphology

    Babenko, V., Babenko, R. & Orlov, Y., 1 Oct 2020, In: BMC Genetics. 21, Suppl 1, 10 p., 73.

    Research output: Contribution to journal › Article › peer-review

  37. Genetics research at the "Centenary of human population genetics" conference and SBB-2019

    Tatarinova, T. V., Tabikhanova, L. E., Eslami, G., Bai, H. & Orlov, Y. L., 1 Oct 2020, In: BMC Genetics. 21, Suppl 1, 4 p., 109.

    Research output: Contribution to journal › Article › peer-review

  38. Medical genetics studies at the SBB-2019 and MGNGS-2019 conferences

    Baranova, A. V., Leberfarb, E. Y., Lebedev, G. S. & Orlov, Y. L., 1 Oct 2020, In: BMC Medical Genetics. 21, Suppl 1, 3 p., 186.

    Research output: Contribution to journal › Article › peer-review

  39. Medical genomics at the Systems Biology and Bioinformatics (SBB-2019) school

    Orlov, Y. L., Voropaeva, E. N., Chen, M. & Baranova, A. V., 18 Sept 2020, In: BMC Medical Genomics. 13, Suppl 8, p. 127 3 p., 127.

    Research output: Contribution to journal › Editorial › peer-review

  40. Bioinformatics research at SBB-2019

    Orlov, Y. L., Galieva, E. R. & Tatarinova, T. V., 14 Sept 2020, In: BMC Bioinformatics. 21, Suppl 11, p. 366 6 p., 366.

    Research output: Contribution to journal › Editorial › peer-review

  41. Genomics and systems biology at the "century of human population genetics" conference

    Tatarinova, T. V., Baranova, A. V., Anashkina, A. A. & Orlov, Y. L., 10 Sept 2020, In: BMC Genomics. 21, Suppl 7, p. 592 3 p., 592.

    Research output: Contribution to journal › Review article › peer-review

  42. Bioinformatics Methods in Medical Genetics and Genomics

    Orlov, Y. L., Baranova, A. V. & Tatarinova, T. V., 1 Sept 2020, In: International Journal of Molecular Sciences. 21, 17, p. 1-5 5 p., 6224.

    Research output: Contribution to journal › Editorial › peer-review

  43. Physiological, biochemical and genetic responses of Caucasian tea (Camellia sinensis (L.) Kuntze) genotypes under cold and frost stress

    Samarina, L. S., Malyukova, L. S., Efremov, A. M., Simonyan, T. A., Matskiv, A. O., Koninskaya, N. G., Rakhmangulov, R. S., Gvasaliya, M. V., Malyarovskaya, V. I., Ryndin, A. V., Orlov, Y. L., Tong, W. & Hanke, M. V., 28 Aug 2020, In: PeerJ. 8, 23 p., e9787.

    Research output: Contribution to journal › Article › peer-review

  44. Editorial: Bioinformatics of Genome Regulation and Systems Biology

    Orlov, Y. L. & Baranova, A. V., 28 Jul 2020, In: Frontiers in Genetics. 11, p. 625 3 p., 625.

    Research output: Contribution to journal › Editorial › peer-review

  45. Consideration of pathogenicity of nsSNVs in CDKN2A gene, as a new tumor marker for leukemia, using bioinformatics methods

    Ghasemi, F., Heidari, M. M., Orlov, Y. L., Khatami, M. & Tabikhanova, L. E., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 85-87 3 p. 9214605. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  46. Reconstruction of Dementia Gene Network Using Online Bioinformatics Tools

    Kovalev, S. S., Dergilev, A. I., Orlov, Y. L., Fateev, O. D. & Kavai-Ool, U. N., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 215-219 5 p. 9214618. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  47. Statistical problems of clusters of transcription factor binding sites in plant genomes

    Dergilev, A. & Orlov, Y. L., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 233-235 3 p. 9214705. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  48. Integrated Computer Analysis of Genomic Sequencing Data Based on ICGenomics Tool

    Orlov, Y. L., Bragin, A. O., Babenko, R. O., Dresvyannikova, A. E., Kovalev, S. S., Shaderkin, I. A., Orlova, N. G. & Naumenko, F. M., 24 Jan 2020, Advances in Intelligent Systems, Computer Science and Digital Economics, CSDEIS 2019. Hu, Z., Petoukhov, S. & He, M. (eds.). Springer Gabler, p. 154-164 11 p. (Advances in Intelligent Systems and Computing; vol. 1127 AISC).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  49. 2019

  50. Triple Haplotypes of the TP53 Gene in Patients with Diffuse Small B-Cell Lymphoma

    Voropaeva, E. N., Cherdyntseva, N. V., Voevoda, M. I., Pospelova, T. I., Maximov, V. N., Orlov, Y. L. & Ageeva, T. A., 1 Dec 2019, In: Russian Journal of Genetics. 55, 12, p. 1564-1568 5 p.

    Research output: Contribution to journal › Article › peer-review

  51. Computer genomics research at the bioinformatics conference series in Novosibirsk

    Orlov, Y. L., Galieva, E. R. & Melerzanov, A. V., 11 Jul 2019, In: BMC Genomics. 20, Suppl 7, p. 537 4 p., 537.

    Research output: Contribution to journal › Article › peer-review

  52. Genomics research at Bioinformatics of Genome Regulation and Structure\ Systems Biology (BGRS\SB) conferences in Novosibirsk

    Orlov, Y. L., Kochetov, A. V., Li, G. & Kolchanov, N. A., 8 May 2019, In: BMC Genomics. 20, Suppl 3, 5 p., 322.

    Research output: Contribution to journal › Article › peer-review

  53. The differences in brain stem transcriptional profiling in hypertensive ISIAH and normotensive WAG rats

    Fedoseeva, L. A., Klimov, L. O., Ershov, N. I., Efimov, V. M., Markel, A. L., Orlov, Y. L. & Redina, O. E., 8 May 2019, In: BMC Genomics. 20, Suppl 3, 16 p., 297.

    Research output: Contribution to journal › Article › peer-review

  54. Medical genetics studies at BGRS conference series

    Baranova, A. V., Skoblov, M. Y., Voropaeva, E. N., Shanmughavel, P. & Orlov, Y. L., 9 Apr 2019, In: BMC Medical Genetics. 20, Suppl 1, p. 50 3 p., 50.

    Research output: Contribution to journal › Article › peer-review

  55. Computational models in genetics at BGRS-2018

    Orlov, Y. L., Tatarinova, T. V. & Kochetov, A. V., 18 Mar 2019, In: BMC Genetics. 20, Suppl 1, p. 28 3 p., 28.

    Research output: Contribution to journal › Article › peer-review

  56. Clinical aspects of TP53 gene inactivation in diffuse large B-cell lymphoma

    Voropaeva, E. N., Pospelova, T. I., Voevoda, M. I., Maksimov, V. N., Orlov, Y. L. & Seregina, O. B., 13 Mar 2019, In: BMC Medical Genomics. 12, Suppl 2, p. 35 10 p., 35.

    Research output: Contribution to journal › Article › peer-review

  57. Medical genomics research at BGRS-2018

    Baranova, A. V., Klimontov, V. V., Letyagin, A. Y. & Orlov, Y. L., 13 Mar 2019, In: BMC Medical Genomics. 12, Suppl 2, p. 36 4 p., 36.

    Research output: Contribution to journal › Article › peer-review

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