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  1. 2024

  2. Relevance of integration of cytogenetics data and chromosome-length genome assemblies at the example of various vertebrates' groups

    Романенко, С. А., Беклемишева, В. Р., Перельман, П. Л., Андреюшкова, Д. А., Марченко, С. А., Lemskaya, N. A., Biltueva, L. S., Kliver, S. & Трифонов, В. А., Aug 2024, Bioinformatics of Genome Regulation and Structure Systems Biology (BGRS/SB-2024): The 14th International Multiconference (05-10 August 2024, Novosibirsk, Russia). Новосибирск: Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, p. 25-28 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  3. Combined Approach to the Calibration of a Single-Crystal Diffractometer. Studying the CsLiMo3O10 Structure in the Region from 90 K to 450 K

    Serebrennikova, P. S., Komarov, V. Y., Trifonov, V. A., Panchenko, A. V. & Gromilov, S. A., Jan 2024, In: Journal of Structural Chemistry. 65, 1, p. 169-185 17 p.

    Research output: Contribution to journal › Article › peer-review

  4. 2023

  5. Integration of fluorescence in situ hybridization and chromosome-length genome assemblies revealed synteny map for guinea pig, naked mole-rat, and human

    Romanenko, S. A., Kliver, S. F., Serdyukova, N. A., Perelman, P. L., Trifonov, V. A., Seluanov, A., Gorbunova, V., Azpurua, J., Pereira, J. C., Ferguson-Smith, M. A. & Graphodatsky, A. S., 29 Nov 2023, In: Scientific Reports. 13, 1, 12 p., 21055.

    Research output: Contribution to journal › Article › peer-review

  6. Robertsonian fusion triggers recombination suppression on sex chromosomes in Coleonyx geckos

    Lisachov, A., Tishakova, K., Romanenko, S., Lisachova, L., Davletshina, G., Prokopov, D., Kratochvíl, L., O Brien, P., Ferguson-Smith, M., Borodin, P. & Trifonov, V., 19 Sept 2023, In: Scientific Reports. 13, 1, 10 p., 15502.

    Research output: Contribution to journal › Article › peer-review

  7. 2022

  8. The Precise Breakpoint Mapping in Paracentric Inversion 10q22.2q23.3 by Comprehensive Cytogenomic Analysis, Multicolor Banding, and Single-Copy Chromosome Sequencing

    Карамышева, Т. В., Татьяна, Г., Елисафенко, Е. А., Трифонов, В. А., Закирова, Э. Г., Орищенко, К. Е., Мария, П. А., Лопаткина, М. Е., Скрябин, Н. А., Лебедев, И. Н. & Рубцов, Н. Б., 14 Dec 2022, In: Biomedicines. 10, 12, 3255.

    Research output: Contribution to journal › Article › peer-review

  9. Identification of Iguania Ancestral Syntenic Blocks and Putative Sex Chromosomes in the Veiled Chameleon (Chamaeleo calyptratus, Chamaeleonidae, Iguania)

    Tishakova, K. V., Prokopov, D. Y., Davletshina, G. I., Rumyantsev, A. V., O'Brien, P. C. M., Ferguson-Smith, M. A., Giovannotti, M., Lisachov, A. P. & Trifonov, V. A., 13 Dec 2022, In: International Journal of Molecular Sciences. 23, 24, 15838.

    Research output: Contribution to journal › Article › peer-review

  10. The Cytogenetic Map of the Nile Crocodile (Crocodylus niloticus, Crocodylidae, Reptilia) with Fluorescence In Situ Localization of Major Repetitive DNAs

    Romanenko, S. A., Prokopov, D. Y., Proskuryakova, A. A., Davletshina, G. I., Tupikin, A. E., Kasai, F., Ferguson-Smith, M. A. & Trifonov, V. A., Nov 2022, In: International Journal of Molecular Sciences. 23, 21, 13063.

    Research output: Contribution to journal › Article › peer-review

  11. 2021

  12. Whole-chromosome fusions in the karyotype evolution of Sceloporus (Iguania, Reptilia) are more frequent in sex chromosomes than autosomes

    Lisachov, A. P., Tishakova, K. V., Romanenko, S. A., Molodtseva, A. S., Prokopov, D. Y., Pereira, J. C., Ferguson-Smith, M. A., Borodin, P. M. & Trifonov, V. A., 13 Sept 2021, In: Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 376, 1833, 1 p., 20200099.

    Research output: Contribution to journal › Article › peer-review

  13. New Data on Organization and Spatial Localization of B-Chromosomes in Cell Nuclei of the Yellow-Necked Mouse Apodemus flavicollis

    Karamysheva, T., Romanenko, S., Makunin, A., Rajičić, M., Bogdanov, A., Trifonov, V., Blagojević, J., Vujošević, M., Orishchenko, K. & Rubtsov, N., 19 Jul 2021, In: Cells. 10, 7, 1819.

    Research output: Contribution to journal › Article › peer-review

  14. New data on comparative cytogenetics of the mouse-like hamsters (Calomyscus thomas, 1905) from iran and turkmenistan

    Romanenko, S. A., Malikov, V. G., Mahmoudi, A., Golenishchev, F. N., Lemskaya, N. A., Pereira, J. C., Trifonov, V. A., Serdyukova, N. A., Ferguson-Smith, M. A., Aliabadian, M. & Graphodatsky, A. S., Jun 2021, In: Genes. 12, 7, 964.

    Research output: Contribution to journal › Article › peer-review

  15. Amplified fragments of an autosome-borne gene constitute a significant component of the w sex chromosome of eremias velox (Reptilia, lacertidae)

    Lisachov, A., Andreyushkova, D., Davletshina, G., Prokopov, D., Romanenko, S., Galkina, S., Saifitdinova, A., Simonov, E., Borodin, P. & Trifonov, V., 20 May 2021, In: Genes. 12, 5, p. NA 779.

    Research output: Contribution to journal › Article › peer-review

  16. Evolution of tandemly arranged repetitive DNAs in three species of Cyprinoidei with different ploidy levels

    Bishani, A., Prokopov, D. Y., Romanenko, S. A., Molodtseva, A. S., Perelman, P. L., Interesova, E. A., Beklemisheva, V. R., Graphodatsky, A. S. & Trifonov, V. A., May 2021, In: Cytogenetic and Genome Research. 161, 1-2, p. 32-42 11 p.

    Research output: Contribution to journal › Article › peer-review

  17. Genetic Diversity of the Prussian Carp Carassius gibelio (Cyprinidae) in the Middle Ob Basin

    Pobedintseva, M. A., Reshetnikova, S. N., Serdyukova, N. A., Bishani, A., Trifonov, V. A. & Interesova, E. A., Apr 2021, In: Russian Journal of Genetics. 57, 4, p. 446-452 7 p.

    Research output: Contribution to journal › Article › peer-review

  18. The rise and fall of the ancient northern pike master sex determining gene

    Pan, Q., Feron, R., Jouanno, E., Darras, H., Herpin, A., Koop, B., Rondeau, E., Goetz, F. W., Larson, W. A., Bernatchez, L., Tringali, M., Curran, S. S., Saillant, E., Denys, G. P. J., von Hippel, F. A., Chen, S., López, J. A., Verreycken, H., Ocalewicz, K., Guyomard, R., & 15 othersEche, C., Lluch, J., Roques, C., Hu, H., Tabor, R., Dehaan, P., Nichols, K. M., Journot, L., Parrinello, H., Klopp, C., Interesova, E. A., Trifonov, V., Schartl, M., Postlethwait, J. & Guiguen, Y., Jan 2021, In: eLife. 10, p. 1-50 50 p.

    Research output: Contribution to journal › Article › peer-review

  19. 2020

  20. Evolution of microRNA biogenesis genes in the sterlet (Acipenser ruthenus) and other polyploid vertebrates

    Fofanov, M. V., Prokopov, D. Y., Kuhl, H., Schartl, M. & Trifonov, V. A., 2 Dec 2020, In: International Journal of Molecular Sciences. 21, 24, p. 1-25 25 p., 9562.

    Research output: Contribution to journal › Article › peer-review

  21. Chromosome distribution of highly conserved tandemly arranged repetitive dnas in the siberian sturgeon (Acipenser baerii)

    Biltueva, L. S., Prokopov, D. Y., Romanenko, S. A., Interesova, E. A., Schartl, M. & Trifonov, V. A., Nov 2020, In: Genes. 11, 11, p. 1-18 18 p., 1375.

    Research output: Contribution to journal › Article › peer-review

  22. High genetic diversity of ancient horses from the Ukok Plateau

    Vorobieva, N. V., Makunin, A. I., Druzhkova, A. S., Kusliy, M. A., Trifonov, V. A., Popova, K. O., Polosmak, N. V., Molodin, V. I., Vasiliev, S. K., Shunkov, M. V. & Graphodatsky, A. S., Nov 2020, In: PLoS ONE. 15, 11, 14 p., e0241997.

    Research output: Contribution to journal › Article › peer-review

  23. Bioinformatic methods applied to the analysis of the genes retained after the whole genome duplication events in the sterlet genome (Acipenser ruthenus)

    Fofanov, M., Sheglova, T., Trifonov, V. & Schartl, M., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 53-56 4 p. 9214587. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  24. The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

    Du, K., Stöck, M., Kneitz, S., Klopp, C., Woltering, J. M., Adolfi, M. C., Feron, R., Prokopov, D., Makunin, A., Kichigin, I., Schmidt, C., Fischer, P., Kuhl, H., Wuertz, S., Gessner, J., Kloas, W., Cabau, C., Iampietro, C., Parrinello, H., Tomlinson, C., & 8 othersJournot, L., Postlethwait, J. H., Braasch, I., Trifonov, V., Warren, W. C., Meyer, A., Guiguen, Y. & Schartl, M., 1 Jun 2020, In: Nature Ecology and Evolution. 4, 6, p. 841-852 12 p.

    Research output: Contribution to journal › Article › peer-review

  25. Chromosome painting does not support a sex chromosome turnover in lacerta agilis linnaeus, 1758

    Lisachov, A. P., Giovannotti, M., Pereira, J. C., Andreyushkova, D. A., Romanenko, S. A., Ferguson-Smith, M. A., Borodin, P. M. & Trifonov, V. A., 1 Apr 2020, In: Cytogenetic and Genome Research. 160, 3, p. 134-140 7 p.

    Research output: Contribution to journal › Article › peer-review

  26. Complex Structure of Lasiopodomys mandarinus vinogradovi Sex Chromosomes, Sex Determination, and Intraspecific Autosomal Polymorphism

    Romanenko, S. A., Smorkatcheva, A. V., Kovalskaya, Y. M., Prokopov, D. Y., Lemskaya, N. A., Gladkikh, O. L., Polikarpov, I. A., Serdyukova, N. A., Trifonov, V. A., Molodtseva, A. S., O'Brien, P. C. M., Golenishchev, F. N., Ferguson-Smith, M. A. & Graphodatsky, A. S., Apr 2020, In: Genes. 11, 4, 17 p., 374.

    Research output: Contribution to journal › Article › peer-review

  27. 2019

  28. Poly(ADP-ribosyl)ation and DNA repair synthesis in the extracts of naked mole rat, mouse, and human cells

    Kosova, A. A., Kutuzov, M. M., Evdokimov, A. N., Ilina, E. S., Belousova, E. A., Romanenko, S. A., Trifonov, V. A., Khodyreva, S. N. & Lavrik, O. I., 15 May 2019, In: Aging. 11, 9, p. 2852-2873 22 p.

    Research output: Contribution to journal › Article › peer-review

  29. Identification of sex chromosomes in Eremias velox (Lacertidae, Reptilia) using lampbrush chromosome analysis

    Lisachov, A. P., Galkina, S. A., Saifitdinova, A. F., Romanenko, S. A., Andreyushkova, D. A., Trifonov, V. A. & Borodin, P. M., 14 May 2019, In: Comparative Cytogenetics. 13, 2, p. 121-132 12 p.

    Research output: Contribution to journal › Article › peer-review

  30. Genetic content of the neo-sex chromosomes in ctenonotus and norops (squamata, dactyloidae) and degeneration of the y chromosome as revealed by high-throughput sequencing of individual chromosomes

    Lisachov, A. P., Makunin, A. I., Giovannotti, M., Pereira, J. C., Druzhkova, A. S., Caputo Barucchi, V., Ferguson-Smith, M. A. & Trifonov, V. A., 1 Apr 2019, In: Cytogenetic and Genome Research. 157, 1-2, p. 115-122 8 p.

    Research output: Contribution to journal › Article › peer-review

  31. First report on B chromosome content in a reptilian species: the case of Anolis carolinensis

    Kichigin, I. G., Lisachov, A. P., Giovannotti, M., Makunin, A. I., Kabilov, M. R., O’Brien, P. C. M., Ferguson-Smith, M. A., Graphodatsky, A. S. & Trifonov, V. A., 11 Feb 2019, In: Molecular Genetics and Genomics. 294, 1, p. 13-21 9 p.

    Research output: Contribution to journal › Article › peer-review

  32. Population genetic structure and phylogeography of sterlet (Acipenser ruthenus, Acipenseridae) in the Ob and Yenisei river basins

    Pobedintseva, M. A., Makunin, A. I., Kichigin, I. G., Kulemzina, A. I., Serdyukova, N. A., Romanenko, S. A., Vorobieva, N. V., Interesova, E. A., Korentovich, M. A., Zaytsev, V. F., Mischenko, A. V., Zadelenov, V. A., Yurchenko, A. A., Sherbakov, D. Y., Graphodatsky, A. S. & Trifonov, V. A., 2 Jan 2019, In: Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis. 30, 1, p. 156-164 9 p.

    Research output: Contribution to journal › Article › peer-review

  33. 2018

  34. Multiple intrasyntenic rearrangements and rapid speciation in voles

    Romanenko, S. A., Serdyukova, N. A., Perelman, P. L., Trifonov, V. A., Golenishchev, F. N., Bulatova, N. S., Stanyon, R. & Graphodatsky, A. S., 8 Oct 2018, In: Scientific Reports. 8, 1, p. 14980 9 p., 14980.

    Research output: Contribution to journal › Article › peer-review

  35. B chromosomes of the asian seabass (Lates calcarifer) contribute to genome variations at the level of individuals and populations

    Komissarov, A., Vij, S., Yurchenko, A., Trifonov, V., Thevasagayam, N., Saju, J., Sridatta, P. S. R., Purushothaman, K., Graphodatsky, A., Orbán, L. & Kuznetsova, I., 20 Sept 2018, In: Genes. 9, 10, p. 1.-15 15 p., 464.

    Research output: Contribution to journal › Article › peer-review

  36. Low-pass single-chromosome sequencing of human small supernumerary marker chromosomes (sSMCs) and Apodemus B chromosomes

    Makunin, A. I., Rajičić, M., Karamysheva, T. V., Romanenko, S. A., Druzhkova, A. S., Blagojević, J., Vujošević, M., Rubtsov, N. B., Graphodatsky, A. S. & Trifonov, V. A., 1 Sept 2018, In: Chromosoma. 127, 3, p. 301-311 11 p.

    Research output: Contribution to journal › Article › peer-review

  37. Evolutionary sex chromosome translocations in amniotes

    Trifonov, V. A., Lisachov, A. P., Kichigin, I. G., Makunin, A. I., Pereira, J. C., Druzhkova, A. S., Ferguson-Smith, M. A. & Giovannotti, M., 16 Aug 2018, In: Comparative Cytogenetics. 12, 3, p. 304-305 2 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  38. Sequencing of supernumerary chromosomes of red fox and raccoon dog confirms a non-random gene acquisition by B chromosomes

    Makunin, A. I., Romanenko, S. A., Beklemisheva, V. R., Perelman, P. L., Druzhkova, A. S., Petrova, K. O., Prokopov, D. Y., Chernyaeva, E. N., Johnson, J. L., Kukekova, A. V., Yang, F., Ferguson-Smith, M. A., Graphodatsky, A. S. & Trifonov, V. A., 10 Aug 2018, In: Genes. 9, 8, 14 p., 405.

    Research output: Contribution to journal › Article › peer-review

  39. Diversity of immunoglobulin light chain genes in non-teleost ray-finned fish uncovers IgL subdivision into five ancient isotypes

    Guselnikov, S. V., Baranov, K. O., Najakshin, A. M., Mechetina, L. V., Chikaev, N. A., Makunin, A. I., Kulemzin, S. V., Andreyushkova, D. A., Stöck, M., Wuertz, S., Gessner, J., Warren, W. C., Schartl, M., Trifonov, V. A. & Taranin, A. V., 28 May 2018, In: Frontiers in Immunology. 9, MAY, p. 1079 15 p., 1079.

    Research output: Contribution to journal › Article › peer-review

  40. 2017

  41. Next generation sequencing of chromosome-specific libraries sheds light on genome evolution in paleotetraploid sterlet (Acipenser ruthenus)

    Andreyushkova, D. A., Makunin, A. I., Beklemisheva, V. R., Romanenko, S. A., Druzhkova, A. S., Biltueva, L. S., Serdyukova, N. A., Graphodatsky, A. S. & Trifonov, V. A., 10 Nov 2017, In: Genes. 8, 11, 12 p., 318.

    Research output: Contribution to journal › Article › peer-review

  42. Genomic organization and physical mapping of tandemly arranged repetitive DNAs in Sterlet (Acipenser ruthenus)

    Biltueva, L. S., Prokopov, D. Y., Makunin, A. I., Komissarov, A. S., Kudryavtseva, A. V., Lemskaya, N. A., Vorobieva, N. V., Serdyukova, N. A., Romanenko, S. A., Gladkikh, O. L., Graphodatsky, A. S. & Trifonov, V. A., 1 Oct 2017, In: Cytogenetic and Genome Research. 152, 3, p. 148-157 10 p.

    Research output: Contribution to journal › Article › peer-review

  43. Mitochondrial DNA analysis of ancient sheep from Altai

    Dymova, M. A., Zadorozhny, A. V., Mishukova, O. V., Khrapov, E. A., Druzhkova, A. S., Trifonov, V. A., Kichigin, I. G., Tishkin, A. A., Grushin, S. P. & Filipenko, M. L., 1 Oct 2017, In: BMC Genetics. 48, 5, p. 615-618 4 p.

    Research output: Contribution to journal › Article › peer-review

  44. Karyotype Evolution and Phylogenetic Relationships of Cricetulus sokolovi Orlov et Malygin 1988 (Cricetidae, Rodentia) Inferred from Chromosomal Painting and Molecular Data

    Poplavskaya, N. S., Romanenko, S. A., Serdyukova, N. A., Trifonov, V. A., Yang, F., Nie, W., Wang, J., Bannikova, A. A., Surov, A. V. & Lebedev, V. S., 1 Aug 2017, In: Cytogenetic and Genome Research. 152, 2, p. 65-72 8 p.

    Research output: Contribution to journal › Article › peer-review

  45. Whole Genome Duplications in Vertebrate Evolution

    Trifonov, V. A., Makunin, A. I., Romanenko, S. A., Biltueva, L. S., Beklemisheva, V. R., Pobedintseva, M. A., Prokopov, D. Y., Andreyushkova, D. A. & Graphodatsky, A. S., 29 Jun 2017, In: Molecular Cytogenetics. 10, 2 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  46. Heteromorphism of "homomorphic" sex chromosomes in two anole species (Squamata, Dactyloidae) revealed by synaptonemal complex analysis

    Lisachov, A. P., Trifonov, V. A., Giovannotti, M., Ferguson-Smith, M. A. & Borodin, P. M., Jun 2017, In: Cytogenetic and Genome Research. 151, 2, p. 89-95 7 p.

    Research output: Contribution to journal › Article › peer-review

  47. Immunocytological analysis of meiotic recombination in two anole lizards (Squamata, Dactyloidae)

    Lisachov, A. P., Trifonov, V. A., Giovannotti, M., Ferguson-Smith, M. A. & Borodin, P. M., 6 Mar 2017, In: Comparative Cytogenetics. 11, 1, p. 129-141 13 p.

    Research output: Contribution to journal › Article › peer-review

  48. New insights into sex chromosome evolution in anole lizards (Reptilia, Dactyloidae)

    Giovannotti, M., Trifonov, V. A., Paoletti, A., Kichigin, I. G., O’Brien, P. C. M., Kasai, F., Giovagnoli, G., Ng, B. L., Ruggeri, P., Cerioni, P. N., Splendiani, A., Pereira, J. C., Olmo, E., Rens, W., Caputo Barucchi, V. & Ferguson-Smith, M. A., 1 Mar 2017, In: Chromosoma. 126, 2, p. 245-260 16 p.

    Research output: Contribution to journal › Article › peer-review

  49. Complete mitochondrial genome of an extinct Equus (Sussemionus) ovodovi specimen from Denisova cave (Altai, Russia)

    Druzhkova, A. S., Makunin, A. I., Vorobieva, N. V., Vasiliev, S. K., Ovodov, N. D., Shunkov, M. V., Trifonov, V. A. & Graphodatsky, A. S., 1 Jan 2017, In: Mitochondrial DNA Part B: Resources. 2, 1, p. 79-81 3 p.

    Research output: Contribution to journal › Article › peer-review

ID: 3455679