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  1. 2025

  2. Off-target interactions in the CRISPR-Cas9 Machinery: mechanisms and outcomes

    Kanazhevskaya, L. Y., Zhdanova, P. V., Chernonosov, A. A. & Koval, V. V., Sept 2025, In: Biochemistry and Biophysics Reports. 43, 102134.

    Research output: Contribution to journal › Article › peer-review

  3. Key thermodynamic characteristics of Cas9 and Cas12a endonucleases’ cleavage of a DNA substrate containing a nucleotide mismatch in the region complementary to RNA

    Baranova, S. V., Zhdanova, P. V., Pestryakov, P. E., Chernonosov, A. A. & Koval, V. V., 1 Jul 2025, In: Biochemical and Biophysical Research Communications. 768, p. 151892 151892.

    Research output: Contribution to journal › Article › peer-review

  4. Thermodynamic parameters obtained for the formation of the Cas12a-RNA/DNA complex

    Baranova, S. V., Zhdanova, P. V., Golyshev, V. M., Lomzov, A. A., Pestryakov, P. E., Chernonosov, A. A. & Koval, V. V., Jan 2025, In: Biochemical and Biophysical Research Communications. 743, p. 151176 151176.

    Research output: Contribution to journal › Article › peer-review

  5. 2024

  6. Gene networks and metabolomic screening analysis revealed specific pathways of amino acid and acylcarnitine profile alterations in blood plasma of patients with Parkinson’s disease and vascular parkinsonism

    Makarova, A. A., Melnikova, P. M., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Predtechenskaya, E. V., Karmanov, S. Y., Koval, V. V., Pokrovsky, A. G., Lavrik, I. N., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 927-939 13 p.

    Research output: Contribution to journal › Article › peer-review

  7. Cleavage of DNA Substrate Containing Nucleotide Mismatch in the Complementary Region to sgRNA by Cas9 Endonuclease: Thermodynamic and Structural Features

    Baranova, S. V., Zhdanova, P. V., Koveshnikova, A. D., Pestryakov, P. E., Vokhtantsev, I. P., Chernonosov, A. A. & Koval, V. V., 9 Oct 2024, In: International Journal of Molecular Sciences. 25, 19, 10862.

    Research output: Contribution to journal › Article › peer-review

  8. Redox Transformations of the OX063 Radical in Biological Media: Oxidative Decay of Initial Trityl with Further Formation of Structurally‐Modified TAM

    Ovcherenko, S. S., Raizvich, A. E., Rogozhnikova, O. Y., Tormyshev, V. M., Trukhin, D. V., Koval, V. V., Salnikov, G. E., Genaev, A. M., Shernyukov, A. V. & Bagryanskaya, E. G., 16 Sept 2024, In: Chemistry - A European Journal. 30, 52, 8 p., e202400718.

    Research output: Contribution to journal › Article › peer-review

  9. Structural and Dynamic Features of the Recognition of 8-oxoguanosine Paired with an 8-oxoG-clamp by Human 8-oxoguanine-DNA Glycosylase

    Lukina, M. V., Zhdanova, P. V. & Koval, V. V., May 2024, In: Current issues in molecular biology. 46, 5, p. 4119-4132 14 p.

    Research output: Contribution to journal › Article › peer-review

  10. Сборник задач и упражнений по молекулярной биологии

    Грин, И. Р., Воробьев, П. Е., Вохтанцев, И. П., Коваль, В. В., Коваль, О. А. & Жарков, Д. О., 2024, 72 p.

    Research output: Book/Report › Teaching manual

  11. 2023

  12. A New Human Uveal Melanoma Cell Line: Melanin Production and Molecular Markers for Targeted Therapy

    Zhilnikova, M. V., Novak, D. D., Troitskaya, O. S., Nushtaeva, A. A., Biryukov, M. M., Zvereva, S. P., Varlamov, M. E., Koval, V. V., Stanishevskaya, O. M., Chernikh, D. V., Kononova, N. V., Atamanov, V. V. & Koval, O. A., Dec 2023, In: Biochemistry (Moscow) Supplement Series B: Biomedical Chemistry. 17, 4, p. 165-171 7 p.

    Research output: Contribution to journal › Article › peer-review

  13. Structure of an Ice-Binding Protein from Myoxocephalus octodecemspinosus Determined by Molecular Dynamics and Based on Circular Dichroism Spectra

    Oleinik, G. A., Zhdanova, P., Koval, V. V., Chernonosov, A. A. & Baranova, S. V., Aug 2023, In: Biophysics (Russian Federation). 68, 4, p. 513-518 6 p., 2.

    Research output: Contribution to journal › Article › peer-review

  14. Dataset for Spectroscopic, Structural and Dynamic Analysis of Human Fe(II)/2OG-Dependent Dioxygenase ALKBH3

    Kanazhevskaya, L. Y., Gorbunov, A. A., Zhdanova, P. V. & Koval, V. V., Mar 2023, In: Data. 8, 3, 57.

    Research output: Contribution to journal › Article › peer-review

  15. 2022

  16. Structure- and Content-Dependent Efficiency of Cas9-Assisted DNA Cleavage in Genome-Editing Systems

    Baranova, S. V., Zhdanova, P. V., Lomzov, A. A., Koval, V. V. & Chernonosov, A. A., Nov 2022, In: International Journal of Molecular Sciences. 23, 22, 13889.

    Research output: Contribution to journal › Article › peer-review

  17. Thermodynamic Swings: How Ideal Complex of Cas9-RNA/DNA Forms

    Zhdanova, P. V., Lomzov, A. A., Prokhorova, D. V., Stepanov, G. A., Chernonosov, A. A. & Koval, V. V., 10 Aug 2022, In: International Journal of Molecular Sciences. 23, 16, 8891.

    Research output: Contribution to journal › Article › peer-review

  18. Structural features of DNA polymerases β and λ in complex with benzo[a]pyrene-adducted DNA cause a difference in lesion tolerance

    Rechkunova, N. I., Zhdanova, P. V., Lebedeva, N. A., Maltseva, E. A., Koval, V. V. & Lavrik, O. I., Aug 2022, In: DNA Repair. 116, 103353.

    Research output: Contribution to journal › Article › peer-review

  19. Application of Parallel Reaction Monitoring to the Development and Validation of a Quantitative Assay for ST-246 in Human Plasma

    Chernonosov, A. A., Oleinik, G. A. & Koval, V. V., 21 Jul 2022, In: International Journal of Molecular Sciences. 23, 14, 8021.

    Research output: Contribution to journal › Article › peer-review

  20. Parallel Reaction Monitoring Mode for Atenolol Quantification in Dried Plasma Spots by Liquid Chromatography Coupled with High-Resolution Mass Spectrometry

    Aksenova, L. V., Koval, V. V. & Chernonosov, A. A., Jul 2022, In: Processes. 10, 7, 1240.

    Research output: Contribution to journal › Article › peer-review

  21. Development and Validation of a Method of Liquid Chromatography Coupled with Tandem Mass Spectrometry for Quantification of ST-246 (Tecovirimat) in Human Plasma

    Oleinik, G. A., Koval, V. V., Usova, S. V., Shishkina, L. N. & Chernonosov, A. A., 1 Jun 2022, In: Molecules. 27, 11, 3577.

    Research output: Contribution to journal › Article › peer-review

  22. Probing the Dynamics of Streptococcus pyogenes Cas9 Endonuclease Bound to the sgRNA Complex Using Hydrogen‐Deuterium Exchange Mass Spectrometry

    Zhdanova, P. V., Chernonosov, A. A., Prokhorova, D. V., Stepanov, G. A., Kanazhevskaya, L. Y. & Koval, V. V., 1 Feb 2022, In: International Journal of Molecular Sciences. 23, 3, 1129.

    Research output: Contribution to journal › Article › peer-review

  23. Dataset for dynamics and conformational changes in human NEIL2 protein analyzed by integrative structural biology approach

    Zhdanova, P. V., Ishchenko, A. A., Chernonosov, A. A., Zharkov, D. O. & Koval, V. V., Feb 2022, In: Data in Brief. 40, 107760.

    Research output: Contribution to journal › Article › peer-review

  24. Dynamics and Conformational Changes in Human NEIL2 DNA Glycosylase Analyzed by Hydrogen/Deuterium Exchange Mass Spectrometry

    Zhdanova, P. V., Ishchenko, A. A., Chernonosov, A. A., Zharkov, D. O. & Koval, V. V., 30 Jan 2022, In: Journal of Molecular Biology. 434, 2, 167334.

    Research output: Contribution to journal › Article › peer-review

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