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  1. 2025

  2. Plant Detection in RGB Images from Unmanned Aerial Vehicles Using Segmentation by Deep Learning and an Impact of Model Accuracy on Downstream Analysis

    Kozhekin, M. V., Genaev, M. A., Komyshev, E. G., Zavyalov, Z. A. & Afonnikov, D. A., 20 Jan 2025, In: Journal of Imaging. 11, 1, 28.

    Research output: Contribution to journal › Article › peer-review

  3. The Role of Long Noncoding RNAs in Plants

    Pronozin, A. Y. & Afonnikov, D. A., 20 Jan 2025, In: Russian Journal of Genetics. 61, 1, p. 1-18 18 p.

    Research output: Contribution to journal › Article › peer-review

  4. 2024

  5. Search for and functional annotation of multi-domain PLA2 family proteins in flatworms

    Bocharnikova, M. E., Turnaev, I. I. & Afonnikov, D. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 854-863 10 p.

    Research output: Contribution to journal › Article › peer-review

  6. Evaluation of the Spike Diversity of Seven Hexaploid Wheat Species and an Artificial Amphidiploid Using a Quadrangle Model Obtained from 2D Images

    Komyshev, E. G., Genaev, M. A., Kruchinina, Y. V., Koval, V. S., Goncharov, N. P. & Afonnikov, D. A., Oct 2024, In: Plants. 13, 19, 2736.

    Research output: Contribution to journal › Article › peer-review

  7. Конвейер обработки гиперспектральных изображений на примере исследования зерен ячменя, содержащих меланин

    Busov, I. D., Genaev, M. A., Komyshev, E. G., Koval, V. S., Zykova, T. E., Glagoleva, A. Y. & Afonnikov, D. A., Jul 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 4, p. 443-455 13 p., 9.

    Research output: Contribution to journal › Article › peer-review

  8. Enrichment of Grain Anthocyanin Content through Marker-Assisted Breeding for Ant1, Ant2 or HvMyc2 Genes in Barley (Hordeum vulgare L.)

    Kukoeva, T. V., Molobekova, C. A., Totsky, I. V., Vasiliev, G. V., Pronozin, A. Y., Afonnikov, D. A., Khlestkina, E. K. & Shoeva, O. Y., Jun 2024, In: Agronomy. 14, 6, 1231.

    Research output: Contribution to journal › Article › peer-review

  9. Identification of Novel Loci Precisely Modulating Pre-Harvest Sprouting Resistance and Red Color Components of the Seed Coat in T. aestivum L.

    Afonnikova, S. D., Kiseleva, A. A., Fedyaeva, A. V., Komyshev, E. G., Koval, V. S., Afonnikov, D. A. & Salina, E. A., 9 May 2024, In: Plants. 13, 10, 21 p., 1309.

    Research output: Contribution to journal › Article › peer-review

  10. Biochemical, Genetic, and Grain Digital Evaluation of Soft Winter Wheat Varieties with Different Germination Index

    Fedyaeva, A. V., Afonnikova, S. D., Afonnikov, D. A., Smirnova, O. G., Deeva, V. N., Pryanishnikov, A. I. & Salina, E. A., Apr 2024, In: Russian Journal of Plant Physiology. 71, 2, 10 p., 56.

    Research output: Contribution to journal › Article › peer-review

  11. Orthoweb: a software package for evolutionary analysis of gene networks

    Ivanov, R. A., Mukhin, A. M., Kazantsev, F. V., Mustafin, Z. S., Afonnikov, D. A., Matushkin, Y. G. & Lashin, S. A., 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 874-881 8 p.

    Research output: Contribution to journal › Article › peer-review

  12. 2023

  13. Gbs-dp: a bioinformatics pipeline for processing data coming from genotyping by sequencing

    Pronozin, A. Y., Salina, E. A. & Afonnikov, D. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 737-745 9 p.

    Research output: Contribution to journal › Article › peer-review

  14. Определение содержания меланина и антоцианов в зернах ячменя на основе анализа цифровых изображений методами машинного обучения

    Komyshev, E. G., Genaev, M. A., Busov, I. D., Kozhekin, M. V., Artemenko, N. V., Glagoleva, A. Y., Koval, V. S. & Afonnikov, D. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 859-868 10 p., 15.

    Research output: Contribution to journal › Article › peer-review

  15. ICAnnoLncRNA: A Snakemake Pipeline for a Long Non-Coding-RNA Search and Annotation in Transcriptomic Sequences

    Pronozin, A. Y. & Afonnikov, D. A., 24 Jun 2023, In: Genes. 14, 7, 1331.

    Research output: Contribution to journal › Article › peer-review

  16. Assembly and Analysis of Plastomes for 15 Potato Cultivars Grown in Russia

    Karetnikov, D. I., Salina, E. A., Kochetov, A. V. & Afonnikov, D. A., Jun 2023, In: Agronomy. 13, 6, 1454.

    Research output: Contribution to journal › Article › peer-review

  17. Analysis of Genome Structure and Its Variations in Potato Cultivars Grown in Russia

    Karetnikov, D. I., Vasiliev, G. V., Toshchakov, S. V., Shmakov, N. A., Genaev, M. A., Nesterov, M. A., Ibragimova, S. M., Rybakov, D. A., Gavrilenko, T. A., Salina, E. A., Patrushev, M. V., Kochetov, A. V. & Afonnikov, D. A., 16 Mar 2023, In: International Journal of Molecular Sciences. 24, 6, 5713.

    Research output: Contribution to journal › Article › peer-review

  18. Three Cycles of Continuous Propagation of a Severe PSTVd Strain NicTr-3 in Solanum lycopersicum cv. Rutgers Resulted in Its Attenuation and Very Mild Disease Symptoms in Potato

    Kochetov, A. V., Shmakov, N., Afonnikov, D. A., Vasiliev, G. V., Shatskaya, N. V., Egorova, A. A., Mironenko, N. V., Lashina, N. M., Khiutti, A. V. & Afanasenko, O. S., Mar 2023, In: Agronomy. 13, 3, 684.

    Research output: Contribution to journal › Article › peer-review

  19. Image-based classification of wheat spikes by glume pubescence using convolutional neural networks

    Artemenko, N. V., Genaev, M. A., Epifanov, R. U., Komyshev, E. G., Kruchinina, Y. V., Koval, V. S., Goncharov, N. P. & Afonnikov, D. A., 2023, In: Frontiers in Plant Science. 14, 16 p., 1336192.

    Research output: Contribution to journal › Article › peer-review

  20. 2022

  21. Фосфолипазы A2 человека: функциональный и эволюционный анализ

    Turnaev, I. I., Bocharnikova, M. E. & Afonnikov, D. A., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 787-797 11 p., 8.

    Research output: Contribution to journal › Article › peer-review

  22. QTL Analysis for Bread Wheat Seed Size, Shape and Color Characteristics Estimated by Digital Image Processing

    Arif, M. A. R., Komyshev, E. G., Genaev, M. A., Koval, V. S., Shmakov, N. A., Börner, A. & Afonnikov, D. A., Aug 2022, In: Plants. 11, 16, 2105.

    Research output: Contribution to journal › Article › peer-review

  23. Classification of Fruit Flies by Gender in Images Using Smartphones and the YOLOv4-Tiny Neural Network

    Genaev, M. A., Komyshev, E. G., Shishkina, O. D., Adonyeva, N. V., Karpova, E. K., Gruntenko, N. E., Zakharenko, L. P., Koval, V. S. & Afonnikov, D. A., 1 Feb 2022, In: Mathematics. 10, 3, 295.

    Research output: Contribution to journal › Article › peer-review

  24. Relationship between the characteristics of bread wheat grains, storage time and germination

    Afonnikov, D. A., Komyshev, E. G., Efimov, V. M., Genaev, M. A., Koval, V. S., Gierke, P. U. & Börner, A., 1 Jan 2022, In: Plants. 11, 1, 35.

    Research output: Contribution to journal › Article › peer-review

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