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  1. 2025

  2. MiceDEGdb: a knowledge base on differentially expressed mouse genes as a model object in biomedical research

    Podkolodnaya, O. A., Chadaeva, I. V., Filonov, S. V., Podkolodnyy, N. L., Rasskazov, D. A., Tverdokhleb, N. N., Zolotareva, K. A., Bogomolov, A. G., Kondratyuk, E. Y., Oshchepkov, D. Y. & Ponomarenko, M. P., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 1, p. 153-161 9 p.

    Research output: Contribution to journal › Article › peer-review

  3. 2024

  4. Candidate SNP Markers Significantly Altering the Affinity of the TATA-Binding Protein for the Promoters of Human Genes Associated with Primary Open-Angle Glaucoma

    Zolotareva, K., Dotsenko, P. A., Podkolodnyy, N., Ivanov, R., Makarova, A. L., Chadaeva, I., Bogomolov, A., Demenkov, P. S., Ivanisenko, V., Oshchepkov, D. & Ponomarenko, M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12802.

    Research output: Contribution to journal › Article › peer-review

  5. Genomic background sequences systematically outperform synthetic ones in de novo motif discovery for ChIP-seq data

    Raditsa, V. V., Tsukanov, A. V., Bogomolov, A. G. & Levitsky, V. G., 1 Sept 2024, In: NAR Genomics and Bioinformatics. 6, 3, 15 p., qae090.

    Research output: Contribution to journal › Article › peer-review

  6. A Principal Components Analysis and Functional Annotation of Differentially Expressed Genes in Brain Regions of Gray Rats Selected for Tame or Aggressive Behavior

    Chadaeva, I., Kozhemyakina, R., Shikhevich, S., Bogomolov, A., Kondratyuk, E., Ощепков, Д. Ю., Orlov, Y. L. & Markel, A. L., May 2024, In: International Journal of Molecular Sciences. 25, 9, 16 p., 4613.

    Research output: Contribution to journal › Article › peer-review

  7. AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.

    Bogomolov, A., Zolotareva, K., Filonov, S., Chadaeva, I., Rasskazov, D., Sharypova, E., Podkolodnyy, N., Ponomarenko, P., Savinkova, L., Tverdokhleb, N., Khandaev, B., Kondratyuk, E., Podkolodnaya, O., Zemlyanskaya, E., Kolchanov, N. A. & Ponomarenko, M., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 607.

    Research output: Contribution to journal › Article › peer-review

  8. PlantReg: the reconstruction of links between transcription factor regulatory networks and biological processes under their control

    Lavrekha, V. V., Omelyanchuk, N. A., Bogomolov, A. G. & Zemlyanskaya, E. V., 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 950-959 10 p.

    Research output: Contribution to journal › Article › peer-review

  9. 2023

  10. Human_SNP_TATAdb: a database of SNPs that statistically significantly change the affinity of the TATA-binding protein to human gene promoters: genome-wide analysis and use cases

    Filonov, S. V., Podkolodnyy, N. L., Podkolodnaya, O. A., Tverdokhleb, N. N., Ponomarenko, P. M., Rasskazov, D. A., Bogomolov, A. G. & Ponomarenko, M. P., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 728-736 9 p.

    Research output: Contribution to journal › Article › peer-review

  11. RatDEGdb: a knowledge base of differentially expressed genes in the rat as a model object in biomedical research

    Chadaeva, I. V., Filonov, S. V., Zolotareva, K. A., Khandaev, B. M., Ershov, N. I., Podkolodnyy, N. L., Kozhemyakina, R. V., Rasskazov, D. A., Bogomolov, A. G., Kondratyuk, E. Y., Klimova, N. V., Shikhevich, S. G., Ryazanova, M. A., Fedoseeva, L. A., Redina, О. Е., Kozhevnikova, O. S., Stefanova, N. A., Kolosova, N. G., Markel, A. L., Ponomarenko, M. P., & 1 othersOshchepkov, D. Y., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 794-806 13 p.

    Research output: Contribution to journal › Article › peer-review

  12. Candidate SNP Markers Significantly Altering the Affinity of TATA-Binding Protein for the Promoters of Human Hub Genes for Atherogenesis, Atherosclerosis and Atheroprotection

    Bogomolov, A., Filonov, S., Chadaeva, I., Rasskazov, D., Khandaev, B., Zolotareva, K., Kazachek, A., Oshchepkov, D., Ivanisenko, V. A., Demenkov, P., Podkolodnyy, N., Kondratyuk, E., Ponomarenko, P., Podkolodnaya, O., Mustafin, Z., Savinkova, L., Kolchanov, N., Tverdokhleb, N. & Ponomarenko, M., 19 May 2023, In: International Journal of Molecular Sciences. 24, 10, 9010.

    Research output: Contribution to journal › Article › peer-review

  13. Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

    Shikhevich, S., Chadaeva, I., Khandaev, B., Kozhemyakina, R., Zolotareva, K., Kazachek, A., Oshchepkov, D., Bogomolov, A., Klimova, N. V., Ivanisenko, V. A., Demenkov, P., Mustafin, Z., Markel, A., Savinkova, L., Kolchanov, N. A., Kozlov, V. & Ponomarenko, M., 16 Feb 2023, In: International Journal of Molecular Sciences. 24, 4, 3996.

    Research output: Contribution to journal › Article › peer-review

  14. 2022

  15. CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

    Lavrekha, V. V., Levitsky, V. G., Tsukanov, A. V., Bogomolov, A. G., Grigorovich, D. A., Omelyanchuk, N., Ubogoeva, E. V., Zemlyanskaya, E. V. & Mironova, V., 18 Aug 2022, In: Frontiers in Plant Science. 13, 942710.

    Research output: Contribution to journal › Article › peer-review

  16. 2021

  17. A Catalog of Human Genes Associated With Pathozoospermia and Functional Characteristics of These Genes

    Ignatieva, E. V., Osadchuk, A. V., Kleshchev, M. A., Bogomolov, A. G. & Osadchuk, L. V., 5 Jul 2021, In: Frontiers in Genetics. 12, 662770.

    Research output: Contribution to journal › Article › peer-review

  18. A bioinformatics model of human diseases on the basis of differentially expressed genes (Of domestic versus wild animals) that are orthologs of human genes associated with reproductive‐potential changes

    Vasiliev, G., Chadaeva, I., Rasskazov, D., Ponomarenko, P., Sharypova, E., Drachkova, I., Bogomolov, A., Savinkova, L., Ponomarenko, M., Kolchanov, N., Osadchuk, A., Oshchepkov, D. & Osadchuk, L., 1 Mar 2021, In: International Journal of Molecular Sciences. 22, 5, p. 1-17 17 p., 2346.

    Research output: Contribution to journal › Article › peer-review

  19. 2020

  20. Reproductive potential of the male (RPM): the computer database of phenotypic and molecular genetic data for Russian men with impaired and normal fertility

    Bogomolov, A., Osadchuk, A. & Osadchuk, L., Dec 2020, In: Journal of integrative bioinformatics. 17, 4, 9 p., 20200032.

    Research output: Contribution to journal › Article › peer-review

  21. Disruptive natural selection by male reproductive potential prevents underexpression of protein-coding genes on the human Y chromosome as a self-domestication syndrome

    Ponomarenko, M., Kleshchev, M., Ponomarenko, P., Chadaeva, I., Sharypova, E., Rasskazov, D., Kolmykov, S., Drachkova, I., Vasiliev, G., Gutorova, N., Ignatieva, E., Savinkova, L., Bogomolov, A., Osadchuk, L., Osadchuk, A. & Oshchepkov, D., 1 Oct 2020, In: BMC Genetics. 21, Suppl 1, 17 p., 89.

    Research output: Contribution to journal › Article › peer-review

  22. Computer methods for visualization chromosome-specific DNA sequences in FISH images

    Bogomolov, A., Karamysheva, T. & Rubtsov, N., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 76-79 4 p. 9214751. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  23. 2018

  24. CpG islands’ clustering uncovers early development genes in the human genome

    Babenko, V. N., Bogomolov, A. G., Babenko, R. O., Galieva, E. R. & Orlov, Y. L., Jun 2018, In: Computer Science and Information Systems. 15, 2, p. 473-485 13 p.

    Research output: Contribution to journal › Article › peer-review

  25. 2017

  26. Origin and evolution of the neo-sex chromosomes in pamphagidae grasshoppers through chromosome fusion and following heteromorphization

    Yerkinovich, I., Bugrov, A. G., Buleu, O. G., Bogomolov, A. G. & Rubtsov, N. B., 13 Nov 2017, In: Genes. 8, 11, 20 p., 323.

    Research output: Contribution to journal › Article › peer-review

  27. Spatial organization of fibroblast and spermatocyte nuclei with different B-chromosome content in Korean field mouse, Apodemus peninsulae (Rodentia, Muridae)

    Karamysheva, T. V., Torgasheva, A. A., Yefremov, Y. R., Bogomolov, A. G., Liehr, T., Borodin, P. M., Rubtsov, N. B. & Puertas, M., Oct 2017, In: Genome. 60, 10, p. 815-824 10 p.

    Research output: Contribution to journal › Article › peer-review

  28. Компьютерные методы анализа хромосомных контактов в ядре клетки по данным технологий секвенирования

    Orlov, Y. L., Thierry, O., Bogomolov, A. G., Tsukanov, A. V., Kulakova, E. V., Galieva, E. R., Bragin, A. O. & Li, G., Oct 2017, In: Biomeditsinskaya Khimiya. 63, 5, p. 418-422 5 p.

    Research output: Contribution to journal › Article › peer-review

  29. Development of software and modification of Q-FISH protocol for estimation of individual telomere length in immunopathology

    Barkovskaya, M. S., Bogomolov, A. G., Knauer, N. Y., Rubtsov, N. B. & Kozlov, V. A., 1 Apr 2017, In: Journal of Bioinformatics and Computational Biology. 15, 2, 18 p., 1650041.

    Research output: Contribution to journal › Article › peer-review

ID: 3450442