Genomic background sequences systematically outperform synthetic ones in de novo motif discovery for ChIP-seq data

Raditsa, V. V., Tsukanov, A. V., Bogomolov, A. G. & Levitsky, V. G., 1 Sept 2024, In: NAR Genomics and Bioinformatics. 6, 3, 15 p., qae090.

Research output: Contribution to journal › Article › peer-review

Computational Reconstruction of the Transcription Factor Regulatory Network Induced by Auxin in Arabidopsis thaliana L.

Omelyanchuk, N. A., Lavrekha, V. V., Bogomolov, A. G., Dolgikh, V. A., Sidorenko, A. D. & Zemlyanskaya, E. V., 10 Jul 2024, In: Plants. 13, 14, 1905.

Research output: Contribution to journal › Article › peer-review

A Principal Components Analysis and Functional Annotation of Differentially Expressed Genes in Brain Regions of Gray Rats Selected for Tame or Aggressive Behavior

Chadaeva, I., Kozhemyakina, R., Shikhevich, S., Bogomolov, A., Kondratyuk, E., Ощепков, Д. Ю., Orlov, Y. L. & Markel, A. L., May 2024, In: International Journal of Molecular Sciences. 25, 9, 16 p., 4613.

Research output: Contribution to journal › Article › peer-review

AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.

Bogomolov, A., Zolotareva, K., Filonov, S., Chadaeva, I., Rasskazov, D., Sharypova, E., Podkolodnyy, N., Ponomarenko, P., Savinkova, L., Tverdokhleb, N., Khandaev, B., Kondratyuk, E., Podkolodnaya, O., Zemlyanskaya, E., Kolchanov, N. A. & Ponomarenko, M., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 607.

Research output: Contribution to journal › Article › peer-review

Human_SNP_TATAdb: a database of SNPs that statistically significantly change the affinity of the TATA-binding protein to human gene promoters: genome-wide analysis and use cases

Filonov, S. V., Podkolodnyy, N. L., Podkolodnaya, O. A., Tverdokhleb, N. N., Ponomarenko, P. M., Rasskazov, D. A., Bogomolov, A. G. & Ponomarenko, M. P., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 728-736 9 p.

Research output: Contribution to journal › Article › peer-review

RatDEGdb: a knowledge base of differentially expressed genes in the rat as a model object in biomedical research

Chadaeva, I. V., Filonov, S. V., Zolotareva, K. A., Khandaev, B. M., Ershov, N. I., Podkolodnyy, N. L., Kozhemyakina, R. V., Rasskazov, D. A., Bogomolov, A. G., Kondratyuk, E. Y., Klimova, N. V., Shikhevich, S. G., Ryazanova, M. A., Fedoseeva, L. A., Redina, О. Е., Kozhevnikova, O. S., Stefanova, N. A., Kolosova, N. G., Markel, A. L., Ponomarenko, M. P., & 1 othersOshchepkov, D. Y., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 794-806 13 p.

Research output: Contribution to journal › Article › peer-review

Candidate SNP Markers Significantly Altering the Affinity of TATA-Binding Protein for the Promoters of Human Hub Genes for Atherogenesis, Atherosclerosis and Atheroprotection

Bogomolov, A., Filonov, S., Chadaeva, I., Rasskazov, D., Khandaev, B., Zolotareva, K., Kazachek, A., Oshchepkov, D., Ivanisenko, V. A., Demenkov, P., Podkolodnyy, N., Kondratyuk, E., Ponomarenko, P., Podkolodnaya, O., Mustafin, Z., Savinkova, L., Kolchanov, N., Tverdokhleb, N. & Ponomarenko, M., 19 May 2023, In: International Journal of Molecular Sciences. 24, 10, 9010.

Research output: Contribution to journal › Article › peer-review

Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

Shikhevich, S., Chadaeva, I., Khandaev, B., Kozhemyakina, R., Zolotareva, K., Kazachek, A., Oshchepkov, D., Bogomolov, A., Klimova, N. V., Ivanisenko, V. A., Demenkov, P., Mustafin, Z., Markel, A., Savinkova, L., Kolchanov, N. A., Kozlov, V. & Ponomarenko, M., 16 Feb 2023, In: International Journal of Molecular Sciences. 24, 4, 3996.

Research output: Contribution to journal › Article › peer-review

CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

Lavrekha, V. V., Levitsky, V. G., Tsukanov, A. V., Bogomolov, A. G., Grigorovich, D. A., Omelyanchuk, N., Ubogoeva, E. V., Zemlyanskaya, E. V. & Mironova, V., 18 Aug 2022, In: Frontiers in Plant Science. 13, 942710.

Research output: Contribution to journal › Article › peer-review

A Catalog of Human Genes Associated With Pathozoospermia and Functional Characteristics of These Genes

Ignatieva, E. V., Osadchuk, A. V., Kleshchev, M. A., Bogomolov, A. G. & Osadchuk, L. V., 5 Jul 2021, In: Frontiers in Genetics. 12, 662770.

Research output: Contribution to journal › Article › peer-review