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  1. 2025

  2. Концепция природной реконструкции генома: Часть 3. Анализ изменения количества теломерной ДНК в клетках колоний как нового амплифицированного признака, возникшего при обработке гемопоэтических стволовых клеток костного мозга

    Ruzanova, V. S., Oshikhmina, S. G., Ritter, G. S., Dolgova, E. V., Kirikovich, S. S., Levites, E. V., Efremov, Y. R., Karamysheva, T. V., Bogomolov, A. G., Meschaninova, M. I., Mamaev, A. L., Taranov, O. S., Sidorov, S. V., Nikonov, S. D., Leplina, O. Y., Ostanin, A. A., Chernykh, E. R., Kolchanov, N. A., Proskurina, A. S. & Bogachev, S. S., Jul 2025, In: Вавиловский журнал генетики и селекции. 29, 4, p. 479-495 17 p.

    Research output: Contribution to journal › Article › peer-review

  3. FlyDEGdb knowledge base on differentially expressed genes of Drosophila melanogaster, a model object in biomedicine

    Podkolodnaya, O. A., Deryuzhenko, M. A., Tverdokhleb, N. N., Zolotareva, K. A., Makovka, Y. V., Podkolodny, N. L., Suslov, V. V., Chadaeva, I. V., Fedoseeva, L. A., Seryapina, A. A., Oshchepkov, D. Y., Bogomolov, A. G., Kondratyuk, E. Y., Redina, O. E., Markel, A. L., Gruntenko, N. E. & Ponomarenko, M. P., 2025, In: Vavilov Journal of Genetics and Breeding. 29, 7, p. 952-962 11 p.

    Research output: Contribution to journal › Article › peer-review

  4. MiceDEGdb: a knowledge base on differentially expressed mouse genes as a model object in biomedical research

    Podkolodnaya, O. A., Chadaeva, I. V., Filonov, S. V., Podkolodnyy, N. L., Rasskazov, D. A., Tverdokhleb, N. N., Zolotareva, K. A., Bogomolov, A. G., Kondratyuk, E. Y., Oshchepkov, D. Y. & Ponomarenko, M. P., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 1, p. 153-161 9 p.

    Research output: Contribution to journal › Article › peer-review

  5. 2024

  6. Candidate SNP Markers Significantly Altering the Affinity of the TATA-Binding Protein for the Promoters of Human Genes Associated with Primary Open-Angle Glaucoma

    Zolotareva, K., Dotsenko, P. A., Podkolodnyy, N., Ivanov, R., Makarova, A. L., Chadaeva, I., Bogomolov, A., Demenkov, P. S., Ivanisenko, V., Oshchepkov, D. & Ponomarenko, M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12802.

    Research output: Contribution to journal › Article › peer-review

  7. PlantReg: the reconstruction of links between transcription factor regulatory networks and biological processes under their control

    Lavrekha, V. V., Omelyanchuk, N. A., Bogomolov, A. G. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 950-959 10 p.

    Research output: Contribution to journal › Article › peer-review

  8. Genomic background sequences systematically outperform synthetic ones in de novo motif discovery for ChIP-seq data

    Raditsa, V. V., Tsukanov, A. V., Bogomolov, A. G. & Levitsky, V. G., 1 Sept 2024, In: NAR Genomics and Bioinformatics. 6, 3, 15 p., qae090.

    Research output: Contribution to journal › Article › peer-review

  9. A Principal Components Analysis and Functional Annotation of Differentially Expressed Genes in Brain Regions of Gray Rats Selected for Tame or Aggressive Behavior

    Chadaeva, I., Kozhemyakina, R., Shikhevich, S., Bogomolov, A., Kondratyuk, E., Ощепков, Д. Ю., Orlov, Y. L. & Markel, A. L., May 2024, In: International Journal of Molecular Sciences. 25, 9, 16 p., 4613.

    Research output: Contribution to journal › Article › peer-review

  10. AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.

    Bogomolov, A., Zolotareva, K., Filonov, S., Chadaeva, I., Rasskazov, D., Sharypova, E., Podkolodnyy, N., Ponomarenko, P., Savinkova, L., Tverdokhleb, N., Khandaev, B., Kondratyuk, E., Podkolodnaya, O., Zemlyanskaya, E., Kolchanov, N. A. & Ponomarenko, M., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 607.

    Research output: Contribution to journal › Article › peer-review

  11. 2023

  12. Human_SNP_TATAdb: a database of SNPs that statistically significantly change the affinity of the TATA-binding protein to human gene promoters: genome-wide analysis and use cases

    Filonov, S. V., Podkolodnyy, N. L., Podkolodnaya, O. A., Tverdokhleb, N. N., Ponomarenko, P. M., Rasskazov, D. A., Bogomolov, A. G. & Ponomarenko, M. P., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 728-736 9 p.

    Research output: Contribution to journal › Article › peer-review

  13. RatDEGdb: a knowledge base of differentially expressed genes in the rat as a model object in biomedical research

    Chadaeva, I. V., Filonov, S. V., Zolotareva, K. A., Khandaev, B. M., Ershov, N. I., Podkolodnyy, N. L., Kozhemyakina, R. V., Rasskazov, D. A., Bogomolov, A. G., Kondratyuk, E. Y., Klimova, N. V., Shikhevich, S. G., Ryazanova, M. A., Fedoseeva, L. A., Redina, О. Е., Kozhevnikova, O. S., Stefanova, N. A., Kolosova, N. G., Markel, A. L., Ponomarenko, M. P., & 1 othersOshchepkov, D. Y., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 794-806 13 p.

    Research output: Contribution to journal › Article › peer-review

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