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  1. MiceDEGdb: a knowledge base on differentially expressed mouse genes as a model object in biomedical research

    Podkolodnaya, O. A., Chadaeva, I. V., Filonov, S. V., Podkolodnyy, N. L., Rasskazov, D. A., Tverdokhleb, N. N., Zolotareva, K. A., Bogomolov, A. G., Kondratyuk, E. Y., Oshchepkov, D. Y. & Ponomarenko, M. P., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 1, p. 153-161 9 p.

    Research output: Contribution to journal › Article › peer-review

  2. Human_SNP_TATAdb: a database of SNPs that statistically significantly change the affinity of the TATA-binding protein to human gene promoters: genome-wide analysis and use cases

    Filonov, S. V., Podkolodnyy, N. L., Podkolodnaya, O. A., Tverdokhleb, N. N., Ponomarenko, P. M., Rasskazov, D. A., Bogomolov, A. G. & Ponomarenko, M. P., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 728-736 9 p.

    Research output: Contribution to journal › Article › peer-review

  3. Genomic background sequences systematically outperform synthetic ones in de novo motif discovery for ChIP-seq data

    Raditsa, V. V., Tsukanov, A. V., Bogomolov, A. G. & Levitsky, V. G., 1 Sept 2024, In: NAR Genomics and Bioinformatics. 6, 3, 15 p., qae090.

    Research output: Contribution to journal › Article › peer-review

  4. FlyDEGdb knowledge base on differentially expressed genes of Drosophila melanogaster, a model object in biomedicine

    Podkolodnaya, O. A., Deryuzhenko, M. A., Tverdokhleb, N. N., Zolotareva, K. A., Makovka, Y. V., Podkolodny, N. L., Suslov, V. V., Chadaeva, I. V., Fedoseeva, L. A., Seryapina, A. A., Oshchepkov, D. Y., Bogomolov, A. G., Kondratyuk, E. Y., Redina, O. E., Markel, A. L., Gruntenko, N. E. & Ponomarenko, M. P., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 7, p. 952-962 11 p., 4.

    Research output: Contribution to journal › Article › peer-review

  5. Disruptive natural selection by male reproductive potential prevents underexpression of protein-coding genes on the human Y chromosome as a self-domestication syndrome

    Ponomarenko, M., Kleshchev, M., Ponomarenko, P., Chadaeva, I., Sharypova, E., Rasskazov, D., Kolmykov, S., Drachkova, I., Vasiliev, G., Gutorova, N., Ignatieva, E., Savinkova, L., Bogomolov, A., Osadchuk, L., Osadchuk, A. & Oshchepkov, D., 22 Oct 2020, In: BMC Genetics. 21, Suppl 1, p. 89 17 p., 89.

    Research output: Contribution to journal › Article › peer-review

  6. Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

    Shikhevich, S., Chadaeva, I., Khandaev, B., Kozhemyakina, R., Zolotareva, K., Kazachek, A., Oshchepkov, D., Bogomolov, A., Klimova, N. V., Ivanisenko, V. A., Demenkov, P., Mustafin, Z., Markel, A., Savinkova, L., Kolchanov, N. A., Kozlov, V. & Ponomarenko, M., 16 Feb 2023, In: International Journal of Molecular Sciences. 24, 4, 3996.

    Research output: Contribution to journal › Article › peer-review

  7. Development of software and modification of Q-FISH protocol for estimation of individual telomere length in immunopathology

    Barkovskaya, M. S., Bogomolov, A. G., Knauer, N. Y., Rubtsov, N. B. & Kozlov, V. A., 1 Apr 2017, In: Journal of Bioinformatics and Computational Biology. 15, 2, 18 p., 1650041.

    Research output: Contribution to journal › Article › peer-review

  8. CpG islands’ clustering uncovers early development genes in the human genome

    Babenko, V. N., Bogomolov, A. G., Babenko, R. O., Galieva, E. R. & Orlov, Y. L., Jun 2018, In: Computer Science and Information Systems. 15, 2, p. 473-485 13 p.

    Research output: Contribution to journal › Article › peer-review

  9. Computer methods for visualization chromosome-specific DNA sequences in FISH images

    Bogomolov, A., Karamysheva, T. & Rubtsov, N., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 76-79 4 p. 9214751. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  10. CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

    Lavrekha, V. V., Levitsky, V. G., Tsukanov, A. V., Bogomolov, A. G., Grigorovich, D. A., Omelyanchuk, N., Ubogoeva, E. V., Zemlyanskaya, E. V. & Mironova, V., 18 Aug 2022, In: Frontiers in Plant Science. 13, 942710.

    Research output: Contribution to journal › Article › peer-review

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