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  1. 2025

  2. Thermodynamic parameters obtained for the formation of the Cas12a-RNA/DNA complex

    Baranova, S. V., Zhdanova, P. V., Golyshev, V. M., Lomzov, A. A., Pestryakov, P. E., Chernonosov, A. A. & Koval, V. V., Jan 2025, In: Biochemical and Biophysical Research Communications. 743, p. 151176 151176.

    Research output: Contribution to journal › Article › peer-review

  3. 2024

  4. Hybrid RNA/DNA Concatemers and Self-Limited Complexes: Structure and Prospects for Therapeutic Applications

    Kanarskaya, M. A., Novikova, S. V. & Lomzov, A. A., 13 Dec 2024, In: Molecules. 29, 24, 5896.

    Research output: Contribution to journal › Article › peer-review

  5. The Role of Key Amino Acids of the Human Fe(II)/2OG-Dependent Dioxygenase ALKBH3 in Structural Dynamics and Repair Activity toward Methylated DNA

    Kanazhevskaya, L. Y., Gorbunov, A. A., Lukina, M. V., Smyshliaev, D. A., Zhdanova, P. V., Lomzov, A. A. & Koval, V. V., Jan 2024, In: International Journal of Molecular Sciences. 25, 2, 1145.

    Research output: Contribution to journal › Article › peer-review

  6. 2023

  7. Application of the weighted histogram method for calculating the thermodynamic parameters of the formation of oligodeoxyribonucleotide duplexes

    Yushin, I. I., Golyshev, V. M., Pyshnyi, D. V. & Lomzov, A. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 807-814 8 p.

    Research output: Contribution to journal › Article › peer-review

  8. 2022

  9. Structure- and Content-Dependent Efficiency of Cas9-Assisted DNA Cleavage in Genome-Editing Systems

    Baranova, S. V., Zhdanova, P. V., Lomzov, A. A., Koval, V. V. & Chernonosov, A. A., Nov 2022, In: International Journal of Molecular Sciences. 23, 22, 13889.

    Research output: Contribution to journal › Article › peer-review

  10. Thermodynamic Swings: How Ideal Complex of Cas9-RNA/DNA Forms

    Zhdanova, P. V., Lomzov, A. A., Prokhorova, D. V., Stepanov, G. A., Chernonosov, A. A. & Koval, V. V., 10 Aug 2022, In: International Journal of Molecular Sciences. 23, 16, 8891.

    Research output: Contribution to journal › Article › peer-review

  11. 2021

  12. Structure and hybridization properties of phosphoryl guanidine oligonucleotides under crowding conditions

    Kanarskaya, M. A., Golyshev, V. M., Pyshnyi, D. V. & Lomzov, A. A., 5 Nov 2021, In: Biochemical and Biophysical Research Communications. 577, p. 110-115 6 p.

    Research output: Contribution to journal › Article › peer-review

  13. Calculation of Energy for RNA/RNA and DNA/RNA Duplex Formation by Molecular Dynamics Simulation

    Golyshev, V. M., Pyshnyi, D. V. & Lomzov, A. A., Nov 2021, In: Molecular Biology. 55, 6, p. 927-940 14 p., 13.

    Research output: Contribution to journal › Article › peer-review

  14. A structural mechanism of DNA polymerase lambda action that promotes error-free bypass of bulky modifications in DNA

    Zhdanova, P., Lomzov, A., Rechkunova, N. & Koval, V., Jul 2021, In: FEBS Open Bio. 11, p. 180-181 2 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  15. Triazinylamidophosphate Oligonucleotides: Synthesis and Study of Their Interaction with Cells and DNA-Binding Proteins

    Kupryushkin, M. S., Zharkov, T. D., Ilina, E. S., Markov, O. V., Kochetkova, A. S., Akhmetova, M. M., Lomzov, A. A., Pyshnyi, D. V., Lavrik, O. I. & Khodyreva, S. N., May 2021, In: Russian Journal of Bioorganic Chemistry. 47, 3, p. 719-733 15 p.

    Research output: Contribution to journal › Article › peer-review

  16. Effects of Phosphoryl Guanidine Modification of Phosphate Residues on the Structure and Hybridization of Oligodeoxyribonucleotides

    Golyshev, V. M., Pyshnyi, D. V. & Lomzov, A. A., 25 Mar 2021, In: The journal of physical chemistry. B. 125, 11, p. 2841-2855 15 p.

    Research output: Contribution to journal › Article › peer-review

  17. 2020

  18. A QCM-based rupture event scanning technique as a simple and reliable approach to study the kinetics of DNA duplex dissociation

    Kurus, N. N., Dultsev, F. N., Golyshev, V. M., Nekrasov, D. V., Pyshnyi, D. V. & Lomzov, A. A., 14 Aug 2020, In: Analytical Methods. 12, 30, p. 3771-3777 7 p.

    Research output: Contribution to journal › Article › peer-review

  19. 2019

  20. Structure an Hybriization Properties of Glycine Morpholine Oligomers in Complexes with DNA an RNA: Experimental and Molecular Dynamics Studies

    Golyshev, V. M., Abramova, T. V., Pyshnyi, D. V. & Lomzov, A. A., 19 Dec 2019, In: Journal of Physical Chemistry B. 123, 50, p. 10571-10581 11 p.

    Research output: Contribution to journal › Article › peer-review

  21. The structural and immunological properties of chimeric proteins containing HIV-1 MPER sites

    Rudometov, A. P., Rudometova, N. B., Shcherbakov, D. N., Lomzov, A. A., Kaplina, O. N., Shcherbakova, N. S., Ilyichev, A. A., Bakulina, A. Y. & Karpenko, L. I., 14 Nov 2019, In: Acta Naturae. 11, 3, p. 56-65 10 p.

    Research output: Contribution to journal › Article › peer-review

  22. Features of Determining Thermodynamic Parameters of Formation of Nucleic Acid Complexes Using Thermal Denaturation with Fluorimetric Signal Detection

    Shevelev, G. Y., Kabilov, M. R., Lomzov, A. A., Dovydenko, I. S. & Pyshnyi, D. V., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 684-698 15 p.

    Research output: Contribution to journal › Article › peer-review

  23. Novel Bisimidazole-Containing Peptidomimetic Molecules for Мetal-Independent RNA Cleavage: Synthesis and Solid-Phase Screening Method

    Pavlova, A. S., Ogurtsova, P. A., Koroleva, L. S., Serpokrylova, I. Y., Lomzov, A. A., Pyshnaya, I. A., Silnikov, V. N. & Pyshnyi, D. V., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 813-824 12 p.

    Research output: Contribution to journal › Article › peer-review

  24. Physicochemical Properties of the Phosphoryl Guanidine Oligodeoxyribonucleotide Analogs

    Dyudeeva, E. S., Kupryushkin, M. S., Lomzov, A. A., Pyshnaya, I. A. & Pyshnyi, D. V., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 709-718 10 p.

    Research output: Contribution to journal › Article › peer-review

  25. DNA complexes with human apurinic/apyrimidinic endonuclease 1: structural insights revealed by pulsed dipolar EPR with orthogonal spin labeling

    Krumkacheva, O. A., Shevelev, G. Y., Lomzov, A. A., Dyrkheeva, N. S., Kuzhelev, A. A., Koval, V. V., Tormyshev, V. M., Polienko, Y. F., Fedin, M. V., Pyshnyi, D. V., Lavrik, O. I. & Bagryanskaya, E. G., 5 Sept 2019, In: Nucleic Acids Research. 47, 15, p. 7767-7780 14 p.

    Research output: Contribution to journal › Article › peer-review

  26. Data for isolation and properties analysis of diastereomers of a mono-substituted phosphoryl guanidine trideoxyribonucleotide

    Lomzov, A. A., Kupryushkin, M. S., Shernyukov, A. V., Nekrasov, M. D., Dovydenko, I. S., Stetsenko, D. A. & Pyshnyi, D. V., 1 Aug 2019, In: Data in Brief. 25, p. 104148 25 p., 104148.

    Research output: Contribution to journal › Article › peer-review

  27. DNA Binding to Gold Nanoparticles through the Prism of Molecular Selection: Sequence-Affinity Relation

    Vorobjev, P., Epanchintseva, A., Lomzov, A., Tupikin, A., Kabilov, M., Pyshnaya, I. & Pyshnyi, D., 18 Jun 2019, In: Langmuir. 35, 24, p. 7916-7928 13 p.

    Research output: Contribution to journal › Article › peer-review

  28. Diastereomers of a mono-substituted phosphoryl guanidine trideoxyribonucleotide: Isolation and properties

    Lomzov, A. A., Kupryushkin, M. S., Shernyukov, A. V., Nekrasov, M. D., Dovydenko, I. S., Stetsenko, D. A. & Pyshnyi, D. V., 11 Jun 2019, In: Biochemical and Biophysical Research Communications. 513, 4, p. 807-811 5 p.

    Research output: Contribution to journal › Article › peer-review

  29. Comparative physico chemical and biological studies of phosphorylguanidine oligonucleotide diasteriomers

    Lomzov, A. A., Apukhtina, V. S., Shernyukov, A. V., Kupryushkin, M. S., Shevelev, G. Y. & Pyshnyi, D. V., 10 May 2019, In: Journal of Biomolecular Structure and Dynamics. 37, p. 76-76 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  30. Structure and hybridization properties of phosphorylguanidine oligonucleotides

    Lomzov, A. A., Golyshev, V. M., Dyudeeva, E. S., Kupryushkin, M. S. & Pyshnyi, D. V., 10 May 2019, In: Journal of Biomolecular Structure and Dynamics. 37, p. 83-84 2 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  31. Molecular Dynamics Simulation of Polarizable Gold Nanoparticles Interacting with Sodium Citrate

    Perfilieva, O. A., Pyshnyi, D. V. & Lomzov, A. A., 12 Feb 2019, In: Journal of Chemical Theory and Computation. 15, 2, p. 1278-1292 15 p.

    Research output: Contribution to journal › Article › peer-review

  32. 2018

  33. Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation

    Gruber, D. R., Toner, J. J., Miears, H. L., Shernyukov, A. V., Kiryutin, A. S., Lomzov, A. A., Endutkin, A. V., Grin, I. R., Petrova, D. V., Kupryushkin, M. S., Yurkovskaya, A. V., Johnson, E. C., Okon, M., Bagryanskaya, E. G., Zharkov, D. O. & Smirnov, S. L., 16 Nov 2018, In: Nucleic Acids Research. 46, 20, p. 10827-10839 13 p.

    Research output: Contribution to journal › Article › peer-review

  34. Nucleotide modifications decrease innate immune response induced by synthetic analogs of snRNAs and snoRNAs

    Stepanov, G., Zhuravlev, E., Shender, V., Nushtaeva, A., Balakhonova, E., Mozhaeva, E., Kasakin, M., Koval, V., Lomzov, A., Pavlyukov, M., Malyants, I., Zhorov, M., Kabilova, T., Chernolovskaya, E., Govorun, V., Kuligina, E., Semenov, D. & Richter, V., 2 Nov 2018, In: Genes. 9, 11, 18 p., 531.

    Research output: Contribution to journal › Article › peer-review

  35. Modified Oligonucleotides for Guiding RNA Cleavage Using Bacterial RNase P

    Novopashina, D. S., Nazarov, A. S., Vorobjeva, M. A., Kuprushkin, M. S., Davydova, A. S., Lomzov, A. A., Pyshnyi, D. V., Altman, S. & Venyaminova, A. G., 1 Nov 2018, In: Molecular Biology. 52, 6, p. 905-912 8 p.

    Research output: Contribution to journal › Article › peer-review

  36. Modified Oligonucleotides for Guiding RNA Cleavage Using Bacterial RNase P

    Novopashina, D. S., Nazarov, A. S., Vorobjeva, M. A., Kuprushkin, M. S., Davydova, A. S., Lomzov, A. A., Pyshnyi, D. V., Altman, S. & Venyaminova, A. G., 1 Nov 2018, In: Molekuliarnaia biologiia. 52, 6, p. 1045-1054 10 p.

    Research output: Contribution to journal › Article › peer-review

  37. Data on PAGE analysis and MD simulation for the interaction of endonuclease Apn1 from Saccharomyces cerevisiae with DNA substrates containing 5,6-dihydrouracyl and 2-aminopurine

    Dyakonova, E. S., Koval, V. V., Lomzov, A. A., Ishchenko, A. A. & Fedorova, O. S., 1 Oct 2018, In: Data in Brief. 20, p. 1515-1524 10 p.

    Research output: Contribution to journal › Article › peer-review

  38. Apurinic/apyrimidinic endonuclease Apn1 from Saccharomyces cerevisiae is recruited to the nucleotide incision repair pathway: Kinetic and structural features

    Dyakonova, E. S., Koval, V. V., Lomzov, A. A., Ishchenko, A. A. & Fedorova, O. S., 1 Sept 2018, In: Biochimie. 152, p. 53-62 10 p.

    Research output: Contribution to journal › Article › peer-review

  39. Effect of the relief on the measurement of bond rupture force with the help of AFM: The dynamics of interaction and optimization of the procedure

    Kurus, N. N., Dultsev, F. N., Shevelev, G., Lomzov, A. A. & Pyshnyi, D. V., 28 Jul 2018, In: Analytical Methods. 10, 28, p. 3498-3505 8 p.

    Research output: Contribution to journal › Article › peer-review

  40. A new approach to precise thermodynamic characterization of hybridization properties of modified oligonucleotides: Comparative studies of deoxyribo- and glycine morpholine pentaadenines

    Golyshev, V. M., Abramova, T. V., Pyshnyi, D. V. & Lomzov, A. A., 1 Mar 2018, In: Biophysical Chemistry. 234, p. 24-33 10 p.

    Research output: Contribution to journal › Article › peer-review

  41. A Versatile Approach to Attachment of Triarylmethyl Labels to DNA for Nanoscale Structural EPR Studies at Physiological Temperatures

    Shevelev, G. Y., Gulyak, E. L., Lomzov, A. A., Kuzhelev, A. A., Krumkacheva, O. A., Kupryushkin, M. S., Tormyshev, V. M., Fedin, M. V., Bagryanskaya, E. G. & Pyshnyi, D. V., 11 Jan 2018, In: Journal of Physical Chemistry B. 122, 1, p. 137-143 7 p.

    Research output: Contribution to journal › Article › peer-review

  42. Effect of laser UV radiation on the eye scleral tissue in patients with open-angle glaucoma

    Razhev, A. M., Iskakov, I. A., Churkin, D. S., Orishich, A. M., Maslov, N. A., Tsibul’skaya, E. O., Lomzov, A. A., Ermakova, O. V., Trunov, A. N. & Chernykh, V. V., 1 Jan 2018, In: Quantum Electronics. 48, 5, p. 481-486 6 p.

    Research output: Contribution to journal › Article › peer-review

  43. Structural basis for the recognition and processing of DNA containing bulky lesions by the mammalian nucleotide excision repair system

    Evdokimov, A. N., Tsidulko, A. Y., Popov, A. V., Vorobiev, Y. N., Lomzov, A. A., Koroleva, L. S., Silnikov, V. N., Petruseva, I. O. & Lavrik, O. I., 1 Jan 2018, In: DNA Repair. 61, p. 86-98 13 p.

    Research output: Contribution to journal › Article › peer-review

  44. 2017

  45. Global DNA dynamics of 8-oxoguanine repair by human OGG1 revealed by stopped-flow kinetics and molecular dynamics simulation

    Lukina, M. V., Koval, V. V., Lomzov, A. A., Zharkov, D. O. & Fedorova, O. S., 1 Oct 2017, In: Molecular BioSystems. 13, 10, p. 1954-1966 13 p.

    Research output: Contribution to journal › Article › peer-review

  46. Rational design and studies of excimer forming novel dual probes to target RNA

    Krasheninina, O. A., Lomzov, A. A., Fishman, V. S., Novopashina, D. S. & Venyaminova, A. G., 1 Apr 2017, In: Bioorganic and Medicinal Chemistry. 25, 7, p. 2244-2250 7 p.

    Research output: Contribution to journal › Article › peer-review

  47. Processing of the abasic sites clustered with the benzo[a]pyrene adducts by the base excision repair enzymes

    Starostenko, L. V., Rechkunova, N. I., Lebedeva, N. A., Lomzov, A. A., Koval, V. V. & Lavrik, O. I., 1 Feb 2017, In: DNA Repair. 50, p. 43-53 11 p.

    Research output: Contribution to journal › Article › peer-review

  48. QCM-based rupture force measurement as a tool to study DNA dehybridization and duplex stability

    Dultsev, F. N., Kolosovsky, E. A., Lomzov, A. A. & Pyshnyi, D. V., Feb 2017, In: Analytical and Bioanalytical Chemistry. 409, 4, p. 891-901 11 p.

    Research output: Contribution to journal › Article › peer-review

  49. 2016

  50. Towards an understanding of crystallization from solution. DFT studies of multi-component serotonin crystals

    Rychkov, D. A., Hunter, S., Kovalskii, V. Y., Lomzov, A. A., Pulham, C. R. & Boldyreva, E. V., 15 Jul 2016, In: Computational and Theoretical Chemistry. 1088, p. 52-61 10 p.

    Research output: Contribution to journal › Article › peer-review

ID: 3433054