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  1. 2025

  2. Metabolomic and gene networks approaches reveal the role of mitochondrial membrane proteins in response of human melanoma cells to THz radiation

    Butikova, E. A., Basov, N. V., Rogachev, A. D., Gaisler, E. V., Ivanisenko, V. A., Demenkov, P. S., Makarova, A. L. A., Ivanisenko, T. V., Razumov, I. A., Kolomeyets, D. A., Cheresiz, S. V., Solovieva, O. I., Larionov, K. P., Sotnikova, Y. S., Patrushev, Y. V., Kolchanov, N. A., Pokrovsky, A. G., Vinokurov, N. A., Kanygin, V. V., Popik, V. M., & 1 othersShevchenko, O. A., Mar 2025, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1870, 2, 17 p., 159595.

    Research output: Contribution to journal › Article › peer-review

  3. 2024

  4. A concept of natural genome reconstruction. Part 2. Effect of extracellular double-stranded DNA fragments on hematopoietic stem cells

    Ruzanova, V. S., Oshikhmina, S. G., Proskurina, A. S., Ritter, G. S., Kirikovich, S. S., Levites, E. V., Efremov, Y. R., Karamysheva, T. V., Meschaninova, M. I., Mamaev, A. L., Taranov, O. S., Bogachev, A. S., Sidorov, S. V., Nikonov, S. D., Leplina, O. Y., Ostanin, A. A., Chernykh, E. R., Kolchanov, N. A., Dolgova, E. V. & Bogachev, S. S., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 993-1007 15 p.

    Research output: Contribution to journal › Article › peer-review

  5. Reconstruction and computational analysis of the microRNA regulation gene network in wheat drought response mechanisms

    Kleshchev, M. A., Maltseva, A. V., Antropova, E. A., Demenkov, P. S., Ivanisenko, T. V., Orlov, Y. L., Chao, H., Chen, M., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 904-917 14 p.

    Research output: Contribution to journal › Article › peer-review

  6. AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium

    Ivanisenko, V. A., Rogachev, A. D., Makarova, A-L. A., Basov, N. V., Gaisler, E. V., Kuzmicheva, I. N., Demenkov, P. S., Venzel, A. S., Ivanisenko, T. V., Antropova, E. A., Kolchanov, N. A., Plesko, V. V., Moroz, G. B., Lomivorotov, V. V. & Pokrovsky, A. G., Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11847.

    Research output: Contribution to journal › Article › peer-review

  7. AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.

    Bogomolov, A., Zolotareva, K., Filonov, S., Chadaeva, I., Rasskazov, D., Sharypova, E., Podkolodnyy, N., Ponomarenko, P., Savinkova, L., Tverdokhleb, N., Khandaev, B., Kondratyuk, E., Podkolodnaya, O., Zemlyanskaya, E., Kolchanov, N. A. & Ponomarenko, M., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 607.

    Research output: Contribution to journal › Article › peer-review

  8. Gene networks and metabolomic screening analysis revealed specific pathways of amino acid and acylcarnitine profile alterations in blood plasma of patients with Parkinson’s disease and vascular parkinsonism

    Makarova, A. A., Melnikova, P. M., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Predtechenskaya, E. V., Karmanov, S. Y., Koval, V. V., Pokrovsky, A. G., Lavrik, I. N., Kolchanov, N. A. & Ivanisenko, V. A., 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 927-939 13 p.

    Research output: Contribution to journal › Article › peer-review

  9. Stimulation of mouse hematopoietic stem cells by angiogenin and DNA preparations

    Potter, E. A., Dolgova, E. V., Proskurina, A. S., Ruzanova, V. S., Efremov, Y. R., Kirikovich, S. S., Oshikhmina, S. G., Mamaev, A. L., Taranov, O. S., Bryukhovetskiy, A. S., Grivtsova, L. U., Kolchanov, N. A., Ostanin, A. A., Chernykh, E. R. & Bogachev, S. S., 2024, In: Brazilian journal of medical and biological research. 57, e13072.

    Research output: Contribution to journal › Article › peer-review

  10. 2023

  11. Gene networks for use in metabolomic data analysis of blood plasma from patients with postoperative delirium

    Ivanisenko, V. A., Basov, N. V., Makarova, A. A., Venzel, A. S., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Kleshchev, M. A., Gaisler, E. V., Moroz, G. B., Plesko, V. V., Sotnikova, Y. S., Patrushev, Y. V., Lomivorotov, V. V., Kolchanov, N. A. & Pokrovsky, A. G., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 768-775 8 p.

    Research output: Contribution to journal › Article › peer-review

  12. Reconstruction and analysis of the gene regulatory network for cell wall function in Arabidopsis thaliana L. leaves in response to water deficit

    Volyanskaya, A. R., Antropova, E. A., Zubairova, U. S., Demenkov, P. S., Venzel, A. S., Orlov, Y. L., Makarova, A. A., Ivanisenko, T. V., Gorshkova, T. A., Aglyamova, A. R., Kolchanov, N. A., Chen, M. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1031-1041 11 p.

    Research output: Contribution to journal › Article › peer-review

  13. BGRS: bioinformatics of genome regulation and data integration

    Orlov, Y. L., Chen, M., Kolchanov, N. A. & Hofestädt, R., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 20230032.

    Research output: Contribution to journal › Article › peer-review

  14. Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection

    Antropova, E. A., Khlebodarova, T. M., Demenkov, P. S., Volianskaia, A. R., Venzel, A. S., Ivanisenko, N. V., Gavrilenko, A. D., Ivanisenko, T. V., Adamovskaya, A. V., Revva, P. M., Kolchanov, N. A., Lavrik, I. N. & Ivanisenko, V. A., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 12 p.

    Research output: Contribution to journal › Article › peer-review

  15. Candidate SNP Markers Significantly Altering the Affinity of TATA-Binding Protein for the Promoters of Human Hub Genes for Atherogenesis, Atherosclerosis and Atheroprotection

    Bogomolov, A., Filonov, S., Chadaeva, I., Rasskazov, D., Khandaev, B., Zolotareva, K., Kazachek, A., Oshchepkov, D., Ivanisenko, V. A., Demenkov, P., Podkolodnyy, N., Kondratyuk, E., Ponomarenko, P., Podkolodnaya, O., Mustafin, Z., Savinkova, L., Kolchanov, N., Tverdokhleb, N. & Ponomarenko, M., 19 May 2023, In: International Journal of Molecular Sciences. 24, 10, 9010.

    Research output: Contribution to journal › Article › peer-review

  16. Research Topics of the Bioinformatics of Gene Regulation

    Orlov, Y. L., Anashkina, A. A., Kumeiko, V. V., Chen, M. & Kolchanov, N. A., 15 May 2023, In: International Journal of Molecular Sciences. 24, 10, 8774.

    Research output: Contribution to journal › Article › peer-review

  17. Impact of Double-Stranded RNA Internalization on Hematopoietic Progenitors and Krebs-2 Cells and Mechanism

    Ritter, G. S., Proskurina, A. S., Meschaninova, M. I., Potter, E. A., Petrova, D. D., Ruzanova, V. S., Dolgova, E. V., Kirikovich, S. S., Levites, E. V., Efremov, Y. R., Nikolin, V. P., Popova, N. A., Venyaminova, A. G., Taranov, O. S., Ostanin, A. A., Chernykh, E. R., Kolchanov, N. A. & Bogachev, S. S., 2 Mar 2023, In: International Journal of Molecular Sciences. 24, 5, 4858.

    Research output: Contribution to journal › Article › peer-review

  18. Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

    Shikhevich, S., Chadaeva, I., Khandaev, B., Kozhemyakina, R., Zolotareva, K., Kazachek, A., Oshchepkov, D., Bogomolov, A., Klimova, N. V., Ivanisenko, V. A., Demenkov, P., Mustafin, Z., Markel, A., Savinkova, L., Kolchanov, N. A., Kozlov, V. & Ponomarenko, M., 16 Feb 2023, In: International Journal of Molecular Sciences. 24, 4, 3996.

    Research output: Contribution to journal › Article › peer-review

  19. 2022

  20. The New General Biological Property of Stem-like Tumor Cells (Part II: Surface Molecules, Which Belongs to Distinctive Groups with Particular Functions, Form a Unique Pattern Characteristic of a Certain Type of Tumor Stem-like Cells)

    Petrova, D. D., Dolgova, E. V., Proskurina, A. S., Ritter, G. S., Ruzanova, V. S., Efremov, Y. R., Potter, E. A., Kirikovich, S. S., Levites, E. V., Taranov, O. S., Ostanin, A. A., Chernykh, E. R., Kolchanov, N. A. & Bogachev, S. S., 1 Dec 2022, In: International Journal of Molecular Sciences. 23, 24, 15800.

    Research output: Contribution to journal › Article › peer-review

  21. Algorithm for the Reconstruction of Mathematical Frame Models of Bacterial Transcription Regulation

    Lakhova, T. N., Kazantsev, F. V., Mukhin, A. M., Kolchanov, N. A., Matushkin, Y. G. & Lashin, S. A., Dec 2022, In: Mathematics. 10, 23, 4480.

    Research output: Contribution to journal › Article › peer-review

  22. Plasma metabolomics and gene regulatory networks analysis reveal the role of nonstructural SARS-CoV-2 viral proteins in metabolic dysregulation in COVID-19 patients

    Ivanisenko, V. A., Gaisler, E. V., Basov, N. V., Rogachev, A. D., Cheresiz, S. V., Ivanisenko, T. V., Demenkov, P. S., Mishchenko, E. L., Khripko, O. P., Khripko, Y. I., Voevoda, S. M., Karpenko, T. N., Velichko, A. J., Voevoda, M. I., Kolchanov, N. A. & Pokrovsky, A. G., Dec 2022, In: Scientific Reports. 12, 1, 12 p., 19977.

    Research output: Contribution to journal › Article › peer-review

  23. The New Version of the ANDDigest Tool with Improved AI-Based Short Names Recognition

    Ivanisenko, T. V., Demenkov, P. S., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2022, In: International Journal of Molecular Sciences. 23, 23, 14934.

    Research output: Contribution to journal › Article › peer-review

  24. The new general biological property of stem-like tumor cells Part I. Peculiarities of the process of the double-stranded DNA fragments internalization into stem-like tumor cells

    Ritter, G. S., Dolgova, E. V., Petrova, D. D., Efremov, Y. R., Proskurina, A. S., Potter, E. A., Ruzanova, V. S., Kirikovich, S. S., Levites, E. V., Taranov, O. S., Ostanin, A. A., Chernykh, E. R., Kolchanov, N. A. & Bogachev, S. S., 8 Sept 2022, In: Frontiers in Genetics. 13, 954395.

    Research output: Contribution to journal › Article › peer-review

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