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  1. 2025

  2. New Sights into Bioinformatics of Gene Regulations and Structure

    Anashkina, A. A., Orlova, N. G., Kolchanov, N. A. & Orlov, Y. L., 4 Jul 2025, In: International Journal of Molecular Sciences. 26, 13

    Research output: Contribution to journal › Article › peer-review

  3. Special Issue “25 Anniversary of Bioinformatics of Genome Regulation and Structure Conference Series”

    Orlov, Y. L., Orlova, N. G., Chen, M. & Kolchanov, N. A., 4 Jul 2025, In: International Journal of Molecular Sciences. 26, 13, 7 p., 6447.

    Research output: Contribution to journal › Article › peer-review

  4. Internalization of extracellular double-stranded DNA as a potential marker of cancer stem cells in Epstein-Barr virus-induced B-cell lymphoma

    Dolgova, E. V., Oshikhmina, S. G., Efremov, Y. R., Ruzanova, V. S., Proskurina, A. S., Kirikovich, S. S., Levites, E. V., Ritter, G. S., Taranov, O. S., Leplina, O. Y., Ostanin, A. A., Chernykh, E. R., Strunkin, D. N., Kolchanov, N. A. & Bogachev, S. S., 27 May 2025, In: Cancer biomarkers : section A of Disease markers. 42, 5, p. 18758592251322040 18758592251322040.

    Research output: Contribution to journal › Article › peer-review

  5. The synergistic antitumor effect of Karanahan technology and in situ vaccination using anti-OX40 antibodies

    Ruzanova, V., Proskurina, A., Ritter, G., Dolgova, E., Oshikhmina, S., Kirikovich, S., Levites, E., Efremov, Y., Taranov, O., Ostanin, A., Chernykh, E., Kolchanov, N. & Bogachev, S., 18 Apr 2025, In: Oncology research. 33, 5, p. 1229-1248 20 p.

    Research output: Contribution to journal › Article › peer-review

  6. Metabolomic and gene networks approaches reveal the role of mitochondrial membrane proteins in response of human melanoma cells to THz radiation

    Butikova, E. A., Basov, N. V., Rogachev, A. D., Gaisler, E. V., Ivanisenko, V. A., Demenkov, P. S., Makarova, A. L. A., Ivanisenko, T. V., Razumov, I. A., Kolomeyets, D. A., Cheresiz, S. V., Solovieva, O. I., Larionov, K. P., Sotnikova, Y. S., Patrushev, Y. V., Kolchanov, N. A., Pokrovsky, A. G., Vinokurov, N. A., Kanygin, V. V., Popik, V. M., & 1 othersShevchenko, O. A., Mar 2025, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1870, 2, 17 p., 159595.

    Research output: Contribution to journal › Article › peer-review

  7. Концепция природной реконструкции генома: Часть 3. Анализ изменения количества теломерной ДНК в клетках колоний как нового амплифицированного признака, возникшего при обработке гемопоэтических стволовых клеток костного мозга

    Ruzanova, V. S., Oshikhmina, S. G., Ritter, G. S., Dolgova, E. V., Kirikovich, S. S., Levites, E. V., Efremov, Y. R., Karamysheva, T. V., Bogomolov, A. G., Meschaninova, M. I., Mamaev, A. L., Taranov, O. S., Sidorov, S. V., Nikonov, S. D., Leplina, O. Y., Ostanin, A. A., Chernykh, E. R., Kolchanov, N. A., Proskurina, A. S. & Bogachev, S. S., 2025, In: Вавиловский журнал генетики и селекции. 29, 4, p. 479-495 17 p.

    Research output: Contribution to journal › Article › peer-review

  8. 2024

  9. A concept of natural genome reconstruction. Part 2. Effect of extracellular double-stranded DNA fragments on hematopoietic stem cells

    Ruzanova, V. S., Oshikhmina, S. G., Proskurina, A. S., Ritter, G. S., Kirikovich, S. S., Levites, E. V., Efremov, Y. R., Karamysheva, T. V., Meschaninova, M. I., Mamaev, A. L., Taranov, O. S., Bogachev, A. S., Sidorov, S. V., Nikonov, S. D., Leplina, O. Y., Ostanin, A. A., Chernykh, E. R., Kolchanov, N. A., Dolgova, E. V. & Bogachev, S. S., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 993-1007 15 p.

    Research output: Contribution to journal › Article › peer-review

  10. Gene networks and metabolomic screening analysis revealed specific pathways of amino acid and acylcarnitine profile alterations in blood plasma of patients with Parkinson’s disease and vascular parkinsonism

    Makarova, A. A., Melnikova, P. M., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Predtechenskaya, E. V., Karmanov, S. Y., Koval, V. V., Pokrovsky, A. G., Lavrik, I. N., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 927-939 13 p.

    Research output: Contribution to journal › Article › peer-review

  11. Reconstruction and computational analysis of the microRNA regulation gene network in wheat drought response mechanisms

    Kleshchev, M. A., Maltseva, A. V., Antropova, E. A., Demenkov, P. S., Ivanisenko, T. V., Orlov, Y. L., Chao, H., Chen, M., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 904-917 14 p.

    Research output: Contribution to journal › Article › peer-review

  12. AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium

    Ivanisenko, V. A., Rogachev, A. D., Makarova, A-L. A., Basov, N. V., Gaisler, E. V., Kuzmicheva, I. N., Demenkov, P. S., Venzel, A. S., Ivanisenko, T. V., Antropova, E. A., Kolchanov, N. A., Plesko, V. V., Moroz, G. B., Lomivorotov, V. V. & Pokrovsky, A. G., Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11847.

    Research output: Contribution to journal › Article › peer-review

  13. AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.

    Bogomolov, A., Zolotareva, K., Filonov, S., Chadaeva, I., Rasskazov, D., Sharypova, E., Podkolodnyy, N., Ponomarenko, P., Savinkova, L., Tverdokhleb, N., Khandaev, B., Kondratyuk, E., Podkolodnaya, O., Zemlyanskaya, E., Kolchanov, N. A. & Ponomarenko, M., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 607.

    Research output: Contribution to journal › Article › peer-review

  14. Stimulation of mouse hematopoietic stem cells by angiogenin and DNA preparations

    Potter, E. A., Dolgova, E. V., Proskurina, A. S., Ruzanova, V. S., Efremov, Y. R., Kirikovich, S. S., Oshikhmina, S. G., Mamaev, A. L., Taranov, O. S., Bryukhovetskiy, A. S., Grivtsova, L. U., Kolchanov, N. A., Ostanin, A. A., Chernykh, E. R. & Bogachev, S. S., 2024, In: Brazilian journal of medical and biological research. 57, e13072.

    Research output: Contribution to journal › Article › peer-review

  15. 2023

  16. Gene networks for use in metabolomic data analysis of blood plasma from patients with postoperative delirium

    Ivanisenko, V. A., Basov, N. V., Makarova, A. A., Venzel, A. S., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Kleshchev, M. A., Gaisler, E. V., Moroz, G. B., Plesko, V. V., Sotnikova, Y. S., Patrushev, Y. V., Lomivorotov, V. V., Kolchanov, N. A. & Pokrovsky, A. G., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 768-775 8 p.

    Research output: Contribution to journal › Article › peer-review

  17. Reconstruction and analysis of the gene regulatory network for cell wall function in Arabidopsis thaliana L. leaves in response to water deficit

    Volyanskaya, A. R., Antropova, E. A., Zubairova, U. S., Demenkov, P. S., Venzel, A. S., Orlov, Y. L., Makarova, A. A., Ivanisenko, T. V., Gorshkova, T. A., Aglyamova, A. R., Kolchanov, N. A., Chen, M. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1031-1041 11 p.

    Research output: Contribution to journal › Article › peer-review

  18. BGRS: bioinformatics of genome regulation and data integration

    Orlov, Y. L., Chen, M., Kolchanov, N. A. & Hofestädt, R., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 20230032.

    Research output: Contribution to journal › Article › peer-review

  19. Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection

    Antropova, E. A., Khlebodarova, T. M., Demenkov, P. S., Volianskaia, A. R., Venzel, A. S., Ivanisenko, N. V., Gavrilenko, A. D., Ivanisenko, T. V., Adamovskaya, A. V., Revva, P. M., Kolchanov, N. A., Lavrik, I. N. & Ivanisenko, V. A., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 12 p.

    Research output: Contribution to journal › Article › peer-review

  20. Candidate SNP Markers Significantly Altering the Affinity of TATA-Binding Protein for the Promoters of Human Hub Genes for Atherogenesis, Atherosclerosis and Atheroprotection

    Bogomolov, A., Filonov, S., Chadaeva, I., Rasskazov, D., Khandaev, B., Zolotareva, K., Kazachek, A., Oshchepkov, D., Ivanisenko, V. A., Demenkov, P., Podkolodnyy, N., Kondratyuk, E., Ponomarenko, P., Podkolodnaya, O., Mustafin, Z., Savinkova, L., Kolchanov, N., Tverdokhleb, N. & Ponomarenko, M., 19 May 2023, In: International Journal of Molecular Sciences. 24, 10, 9010.

    Research output: Contribution to journal › Article › peer-review

  21. Research Topics of the Bioinformatics of Gene Regulation

    Orlov, Y. L., Anashkina, A. A., Kumeiko, V. V., Chen, M. & Kolchanov, N. A., 15 May 2023, In: International Journal of Molecular Sciences. 24, 10, 8774.

    Research output: Contribution to journal › Article › peer-review

  22. Impact of Double-Stranded RNA Internalization on Hematopoietic Progenitors and Krebs-2 Cells and Mechanism

    Ritter, G. S., Proskurina, A. S., Meschaninova, M. I., Potter, E. A., Petrova, D. D., Ruzanova, V. S., Dolgova, E. V., Kirikovich, S. S., Levites, E. V., Efremov, Y. R., Nikolin, V. P., Popova, N. A., Venyaminova, A. G., Taranov, O. S., Ostanin, A. A., Chernykh, E. R., Kolchanov, N. A. & Bogachev, S. S., 2 Mar 2023, In: International Journal of Molecular Sciences. 24, 5, 4858.

    Research output: Contribution to journal › Article › peer-review

  23. Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

    Shikhevich, S., Chadaeva, I., Khandaev, B., Kozhemyakina, R., Zolotareva, K., Kazachek, A., Oshchepkov, D., Bogomolov, A., Klimova, N. V., Ivanisenko, V. A., Demenkov, P., Mustafin, Z., Markel, A., Savinkova, L., Kolchanov, N. A., Kozlov, V. & Ponomarenko, M., 16 Feb 2023, In: International Journal of Molecular Sciences. 24, 4, 3996.

    Research output: Contribution to journal › Article › peer-review

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