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  1. 2020

  2. Activity of Human Apurinic/Apyrimidinic Endonuclease APE1 Toward Damaged DNA and Native RNA With Non-canonical Structures

    Davletgildeeva, A. T., Kuznetsova, A. A., Fedorova, O. S. & Kuznetsov, N. A., 30 Oct 2020, In: Frontiers in Cell and Developmental Biology. 8, 14 p., 590848.

    Research output: Contribution to journal › Article › peer-review

  3. Modulation of the apurinic/apyrimidinic endonuclease activity of human APE1 and of its natural polymorphic variants by base excision repair proteins

    Kladova, O. A., Alekseeva, I. V., Saparbaev, M., Fedorova, O. S. & Kuznetsov, N. A., 1 Oct 2020, In: International Journal of Molecular Sciences. 21, 19, p. 1-15 15 p., 7147.

    Research output: Contribution to journal › Article › peer-review

  4. The Role of Active-Site Plasticity in Damaged-Nucleotide Recognition by Human Apurinic/Apyrimidinic Endonuclease APE1

    Bulygin, A. A., Kuznetsova, A. A., Vorobjev, Y. N., Fedorova, O. S. & Kuznetsov, N. A., 1 Sept 2020, In: Molecules. 25, 17, 13 p., 3940.

    Research output: Contribution to journal › Article › peer-review

  5. Role of Arg243 and His239 Residues in the Recognition of Damaged Nucleotides by Human Uracil-DNA Glycosylase SMUG1

    Iakovlev, D. A., Alekseeva, I. V., Kuznetsov, N. A. & Fedorova, O. S., 1 May 2020, In: Biochemistry (Moscow). 85, 5, p. 594-603 10 p.

    Research output: Contribution to journal › Article › peer-review

  6. An Assay for the Activity of Base Excision Repair Enzymes in Cellular Extracts Using Fluorescent DNA Probes

    Kladova, O. A., Iakovlev, D. A., Groisman, R., Ishchenko, A. A., Saparbaev, M. K., Fedorova, O. S. & Kuznetsov, N. A., 1 Apr 2020, In: Biochemistry (Moscow). 85, 4, p. 480-489 10 p.

    Research output: Contribution to journal › Article › peer-review

  7. Chapter 11: Alternative DNA Repair Pathways to Handle Complex DNA Damage Generated by Oxidative Stress and Anticancer Drugs: Alternative DNA Repair Pathways to Handle Complex DNA Damage Generated by Oxidative Stress and Anticancer Drugs

    Федорова, О. С. & Кузнецов, Н. А., 2020, DNA Damage, DNA Repair and Disease: Volume 1. Dizdaroglu, M. & Lloyd, R. S. (eds.). London: Royal Society of Chemistry, Vol. 1. p. 249-278 30 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  8. Определение сравнительной активности ключевых ферментов эксцизионной репарации оснований в клеточных экстрактах

    Кладова, О. А., Яковлев, Д. А., Groisman, R., Ishchenko, A. A., Saparbaev, M. K., Федорова, О. С. & Кузнецов, Н. А., 2020, In: Биохимия. 85, 4, p. 556-566 11 p., 8.

    Research output: Contribution to journal › Article › peer-review

  9. Роль аминокислотных остатков Arg243 и His239 в процессе узнавания поврежденного нуклеотида урацил-ДНК-гликозилазой человека SMUG1

    Яковлев, Д. А., Алексеева, И. В., Кузнецов, Н. А. & Федорова, О. С., 2020, In: Биохимия. 85, 5, p. 695-705 11 p., 8.

    Research output: Contribution to journal › Article › peer-review

  10. 2019

  11. Role of Ionizing Amino Acid Residues in the Process of DNA Binding by Human AP Endonuclease 1 and in Its Catalysis

    Alekseeva, I. V., Bakman, A. S., Vorobjev, Y. N., Fedorova, O. S. & Kuznetsov, N. A., 14 Nov 2019, In: Journal of Physical Chemistry B. 123, 45, p. 9546-9556 11 p.

    Research output: Contribution to journal › Article › peer-review

  12. Comparative Analysis of Nucleotide Fluorescent Analogs for Registration of DNA Conformational Changes Induced by Interaction with Formamidopyrimidine-DNA Glycosylase Fpg

    Kuznetsova, A. A., Kladova, O. A., Barthes, N. P. F., Michel, B. Y., Burger, A., Fedorova, O. S. & Kuznetsov, N. A., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 591-598 8 p.

    Research output: Contribution to journal › Article › peer-review

  13. New Fluorescent Analogs of Nucleotides Based on 3-Hydroxychromone for Recording Conformational Changes of DNA

    Kladova, O. A., Kuznetsova, A. A., Barthes, N. P. F., Michel, B. Y., Burger, A., Fedorova, O. S. & Kuznetsov, N. A., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 599-607 9 p.

    Research output: Contribution to journal › Article › peer-review

  14. The role of active-site residues Phe98, HiS239, and Arg243 in DNA binding and in the catalysis of human uracil–DNA glycosylase SMUG1

    Iakovlev, D. A., Alekseeva, I. V., Vorobjev, Y. N., Kuznetsov, N. A. & Fedorova, O. S., 28 Aug 2019, In: Molecules. 24, 17, 12 p., 3133.

    Research output: Contribution to journal › Article › peer-review

  15. The impact of single-nucleotide polymorphisms of human apurinic/apyrimidinic endonuclease 1 on specific DNA binding and catalysis

    Alekseeva, I. V., Davletgildeeva, A. T., Arkova, O. V., Kuznetsov, N. A. & Fedorova, O. S., 1 Aug 2019, In: Biochimie. 163, p. 73-83 11 p.

    Research output: Contribution to journal › Article › peer-review

  16. Roles of Active-Site Amino Acid Residues in Specific Recognition of DNA Lesions by Human 8-Oxoguanine-DNA Glycosylase (OGG1)

    Tyugashev, T. E., Vorobjev, Y. N., Kuznetsova, A. A., Lukina, M. V., Kuznetsov, N. A. & Fedorova, O. S., 13 Jun 2019, In: Journal of Physical Chemistry B. 123, 23, p. 4878-4887 10 p.

    Research output: Contribution to journal › Article › peer-review

  17. Conformational Dynamics of Damage Processing by Human DNA Glycosylase NEIL1

    Kladova, O. A., Grin, I. R., Fedorova, O. S., Kuznetsov, N. A. & Zharkov, D. O., 15 Mar 2019, In: Journal of Molecular Biology. 431, 6, p. 1098-1112 15 p.

    Research output: Contribution to journal › Article › peer-review

  18. Thermodynamics of the DNA repair process by endonuclease VIII

    Kladova, O. A., Kuznetsov, N. A. & Fedorova, O. S., 1 Jan 2019, In: Acta Naturae. 11, 1, p. 29-37 9 p.

    Research output: Contribution to journal › Article › peer-review

  19. 2018

  20. Substrate specificity of human apurinic/apyrimidinic endonuclease APE1 in the nucleotide incision repair pathway

    Kuznetsova, A. A., Matveeva, A. G., Milov, A. D., Vorobjev, Y. N., Dzuba, S. A., Fedorova, O. S. & Kuznetsov, N. A., 30 Nov 2018, In: Nucleic Acids Research. 46, 21, p. 11454-11465 12 p.

    Research output: Contribution to journal › Article › peer-review

  21. Kinetic features of 30-50 exonuclease activity of human AP-endonuclease ape1

    Kuznetsova, A. A., Fedorova, O. S. & Kuznetsov, N. A., 21 Aug 2018, In: Molecules. 23, 9, 14 p., 2101.

    Research output: Contribution to journal › Article › peer-review

  22. Effect of pH on DNA binding and catalysis of human apurinic/apyrimidinic endonuclease 1

    Alekseeva, I., Bakman, A., Vorobjev, Y., Fedorova, O. & Kuznetsov, N., Jul 2018, In: FEBS Open Bio. 8, p. 405-405 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  23. Evolution of inhibitor-resistant variants of HIV protease analyzed by pre-steady state kinetic analysis

    Zakharova, M., Kuznetsova, A., Kaliberda, E., Dronina, M., Kolesnikov, A., Kozyr, A., Smirnov, I., Rumsh, L., Fedorova, O., Knorre, D., Gabibov, A. & Kuznetsov, N., Jul 2018, In: FEBS Open Bio. 8, p. 290-291 2 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  24. New details of specific site recognition by human single-strand selective monofunctional uracil-DNA glycosylase SMUG1

    Iakovlev, D. A., Misovets, I. V., Alekseeva, I. A., Vorobjev, Y. N., Kuznetsov, N. A. & Fedorova, O. S., Jul 2018, In: FEBS Open Bio. 8, p. 446-447 2 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  25. Stopped-flow kinetic study of DNA demethylation by Fe(II)/2-oxoglutarate-dependent dioxygenase AlkB

    Kanazhevskaya, L., Alekseeva, I., Kuznetsov, N. & Fedorova, O., Jul 2018, In: FEBS Open Bio. 8, p. 415-415 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  26. Thermodynamic and kinetic analysis of specific lesion recognition by wild-type endonuclease III and its catalytic mutants

    Kladova, O., Kuznetsov, N. & Fedorova, O., Jul 2018, In: FEBS Open Bio. 8, p. 388-388 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  27. 2017

  28. Pre-steady-state kinetic analysis of damage recognition by human single-strand selective monofunctional uracil-DNA glycosylase SMUG1

    Kuznetsova, A. A., Iakovlev, D. A., Misovets, I. V., Ishchenko, A. A., Saparbaev, M. K., Kuznetsov, N. A. & Fedorova, O. S., 21 Nov 2017, In: Molecular BioSystems. 13, 12, p. 2638-2649 12 p.

    Research output: Contribution to journal › Article › peer-review

  29. Evolution of inhibitor-resistant natural mutant forms of HIV-1 protease probed by pre-steady state kinetic analysis

    Zakharova, M. Y., Kuznetsova, A. A., Kaliberda, E. N., Dronina, M. A., Kolesnikov, A. V., Kozyr, A. V., Smirnov, I. V., Rumsh, L. D., Fedorova, O. S., Knorre, D. G., Gabibov, A. G. & Kuznetsov, N. A., 1 Nov 2017, In: Biochimie. 142, p. 125-134 10 p.

    Research output: Contribution to journal › Article › peer-review

  30. Conformational dynamics of human dioxygenase ABH2 in the course of action on methylated DNA

    Iakovlev, D. A., Timofeyeva, N. A., Kuznetsov, N. A. & Fedorova, O. S., Sept 2017, In: FEBS Journal. 284, p. 109-110 2 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  31. Effect of downstream enzymes of base excision DNA repair pathway on the action of human DNA glycosylase MBD4

    Kladova, O., Iakovlev, D., Kuznetsov, N. & Fedorova, O., Sept 2017, In: FEBS Journal. 284, p. 112-112 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  32. Pre-steady state kinetics of DNA binding and abasic site hydrolysis by tyrosyl-DNA phosphodiesterase 1

    Kuznetsov, N. A., Lebedeva, N. A., Kuznetsova, A. A., Rechkunova, N. I., Dyrkheeva, N. S., Kupryushkin, M. S., Stetsenko, D. A., Pyshnyi, D. V., Fedorova, O. S. & Lavrik, O. I., 18 Aug 2017, In: Journal of Biomolecular Structure and Dynamics. 35, 11, p. 2314-2327 14 p.

    Research output: Contribution to journal › Article › peer-review

  33. Mutational and kinetic analysis of lesion recognition by Escherichia coli endonuclease VIII

    Kladova, O. A., Kuznetsova, A. A., Fedorova, O. S. & Kuznetsov, N. A., 13 May 2017, In: Genes. 8, 5, 13 p., 140.

    Research output: Contribution to journal › Article › peer-review

  34. The formation of catalytically competent enzyme–substrate complex is not a bottleneck in lesion excision by human alkyladenine DNA glycosylase

    Kuznetsov, N. A., Kiryutin, A. S., Kuznetsova, A. A., Panov, M. S., Barsukova, M. O., Yurkovskaya, A. V. & Fedorova, O. S., 4 Apr 2017, In: Journal of Biomolecular Structure and Dynamics. 35, 5, p. 950-967 18 p.

    Research output: Contribution to journal › Article › peer-review

  35. Interaction features of adenine DNA glycosylase MutY from E. coli with DNA substrates

    Tyugashev, T. E., Kuznetsova, A. A., Kuznetsov, N. A. & Fedorova, O. S., 1 Jan 2017, In: Russian Journal of Bioorganic Chemistry. 43, 1, p. 13-22 10 p.

    Research output: Contribution to journal › Article › peer-review

  36. The kinetic analysis of recognition of the damaged nucleotides by mutant forms of the 8-oxoguanine DNA glycosylase hOGG1

    Lukina, M. V., Kuznetsova, A. A., Kuznetsov, N. A. & Fedorova, O. S., 1 Jan 2017, In: Russian Journal of Bioorganic Chemistry. 43, 1, p. 1-12 12 p.

    Research output: Contribution to journal › Article › peer-review

  37. Search for Modified DNA Sites with the Human Methyl-CpG-Binding Enzyme MBD4

    Yakovlev, D. A., Kuznetsova, A. A., Fedorova, O. S. & Kuznetsov, N. A., 2017, In: Acta Naturae. 9, 1, p. 26-37 12 p.

    Research output: Contribution to journal › Article › peer-review

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