Section of Molecular Biology and Biotechnology - Research output

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2024
Probing the Conformational Restraints of DNA Damage Recognition with β-L-Nucleotides
Yudkina, A. V., Kim, D. V., Zharkov, T. D., Zharkov, D. O. & Endutkin, A. V., 30 May 2024, In: International Journal of Molecular Sciences. 25, 11, 6006.
Research output: Contribution to journal › Article › peer-review
Catalase Activity of IgG and κκ-IgG, λλ-IgG, and κλ-IgG Subfractions in HIV-Infected Patients and Healthy Donors
Tolmacheva, A. S., Sedykh, S. E., Onvumere, M. K., Timofeeva, A. M., Maksimenko, L. V., Gashnikova, N. M. & Nevinsky, G. A., 16 May 2024, In: Frontiers in Bioscience - Landmark. 29, 5, p. 191
Research output: Contribution to journal › Article › peer-review
DNA-Binding Proteins and Passenger Proteins in Plasma DNA–Protein Complexes: Imprint of Parental Cells or Key Mediators of Carcinogenesis Processes?
Tutanov, O., Shefer, A., Shefer, E., Ruzankin, P., Tsentalovich, Y. & Tamkovich, S., 9 May 2024, In: International Journal of Molecular Sciences. 25, 10, 5165.
Research output: Contribution to journal › Article › peer-review
Natural Antibodies Produced in Vaccinated Patients and COVID-19 Convalescents Hydrolyze Recombinant RBD and Nucleocapsid (N) Proteins
Timofeeva, A. M., Shayakhmetova, L. S., Nikitin, A. O., Sedykh, T. A., Matveev, A. L., Shanshin, D. V., Volosnikova, E. A., Merkuleva, I. A., Shcherbakov, D. N., Tikunova, N. V., Sedykh, S. E. & Nevinsky, G. A., 2 May 2024, In: Biomedicines. 12, 5, 1007.
Research output: Contribution to journal › Article › peer-review
SNP-Associated Substitutions of Amino Acid Residues in the dNTP Selection Subdomain Decrease Polβ Polymerase Activity
Kladova, O. A., Tyugashev, T. E., Miroshnikov, A. A., Novopashina, D. S., Kuznetsov, N. A. & Kuznetsova, A. A., 2 May 2024, In: Biomolecules. 14, 5, 19 p., 547.
Research output: Contribution to journal › Article › peer-review
Biochemical, Hematological, Inflammatory, and Gut Permeability Biomarkers in Patients with Alcohol Withdrawal Syndrome with and without Delirium Tremens
Melamud, M. M., Bobrik, D. V., Brit, P. I., Efremov, I. S., Buneva, V. N., Nevinsky, G. A., Akhmetova, E. A., Asadullin, A. R. & Ermakov, E. A., May 2024, In: Journal of Clinical Medicine. 13, 10, 2776.
Research output: Contribution to journal › Article › peer-review
Phylogenetic and taxonomic relationships between morphotypes related to Elymus caninus (Poaceae) based on sequence of a nuclear gene GBSS1 (waxy) and sexual hybridization
Agafonov, A. V., Shabanova, E. V., Emtseva, M. V., Asbaganov, S. V., Morozov, I. V., Bondar, A. A. & Dorogina, O. V., May 2024, In: Journal of Systematics and Evolution. 62, 3, p. 520-533 14 p.
Research output: Contribution to journal › Article › peer-review
Structural and Dynamic Features of the Recognition of 8-oxoguanosine Paired with an 8-oxoG-clamp by Human 8-oxoguanine-DNA Glycosylase
Lukina, M. V., Zhdanova, P. V. & Koval, V. V., May 2024, In: Current issues in molecular biology. 46, 5, p. 4119-4132 14 p.
Research output: Contribution to journal › Article › peer-review
The Impact of SNP-Induced Amino Acid Substitutions L19P and G66R in the dRP-Lyase Domain of Human DNA Polymerase β on Enzyme Activities
Kladova, O. A., Tyugashev, T. E., Yakimov, D. V., Mikushina, E. S., Novopashina, D. S., Kuznetsov, N. A. & Kuznetsova, A. A., 10 Apr 2024, In: International Journal of Molecular Sciences. 25, 8, 4182.
Research output: Contribution to journal › Article › peer-review
Stationary and dynamic mathematical modeling of autothermal reforming of diesel with aromatic compounds
Zazhigalov, S. V., Shilov, V. A., Kireenkov, V. V., Kulikov, A. V., Burmatova, M. A., Rogozhnikov, V. N., Potemkin, D. I., Zagoruiko, A. N. & Snytnikov, P. V., 3 Apr 2024, In: International Journal of Hydrogen Energy. 61, p. 831-839 9 p.
Research output: Contribution to journal › Article › peer-review
Binding of Natural Antibodies Generated after COVID-19 and Vaccination with Individual Peptides Corresponding to the SARS-CoV-2 S-Protein
Timofeeva, A. M., Sedykh, S. E., Litvinova, E. A., Dolgushin, S. A., Matveev, A. L., Tikunova, N. V. & Nevinsky, G. A., Apr 2024, In: Vaccines. 12, 4, 426.
Research output: Contribution to journal › Article › peer-review
Strategies of N-Glycosidic Bond Cleavage by DNA Repair Enzymes
Endutkin, A. V. & Zharkov, D. O., Apr 2024, In: Moscow University Chemistry Bulletin. 79, 2, p. 121-126 6 p., 7.
Research output: Contribution to journal › Article › peer-review
Studying Structure and Functions of Nucleosomes with Atomic Force Microscopy
Ukraintsev, A. A., Kutuzov, M. M. & Lavrik, O. I., Apr 2024, In: Biochemistry (Moscow). 89, 4, p. 674-687 14 p.
Research output: Contribution to journal › Review article › peer-review
Увеальная меланома: Молекулярно-генетические механизмы развития и подходы к терапии
Zhilnikova, M. V., Troitskaya, O. S., Novak, D. D., Atamanov, V. V. & Koval, O. A., Apr 2024, In: Molekuliarnaia biologiia. 58, 2, p. 189-203 15 p.
Research output: Contribution to journal › Review article › peer-review
Autoantibodies-Abzymes with Phosphatase Activity in Experimental Autoimmune Encephalomyelitis Mice
Urusov, A. E., Aulova, K. S. & Nevinsky, G. A., 20 Mar 2024, In: Molecules. 29, 6, 1382.
Research output: Contribution to journal › Article › peer-review
Properties of Potential Plant-Growth-Promoting Bacteria and Their Effect on Wheat Growth Promotion (Triticum aestivum) and Soil Characteristics
Voronina, E., Sokolova, E., Tromenschleger, I., Mishukova, O., Hlistun, I., Miroshnik, M., Savenkov, O., Buyanova, M., Ivanov, I., Galyamova, M. & Smirnova, N., Mar 2024, In: Microbiology Research. 15, 1, p. 20-32 13 p.
Research output: Contribution to journal › Article › peer-review
Respiratory Syncytial Virus: Biology, Genetic Diversity, and Perspective Control Preparations
Maslov, D. E., Osipov, I. D., Vasikhovskaya, V. A., Zabelina, D. S., Meshcheryakov, N. I., Kartashov, M. Y., Romanov, S. E. & Netesov, S. V., Mar 2024, In: Molecular Genetics, Microbiology and Virology. 39, 1, p. 14-30 17 p.
Research output: Contribution to journal › Article › peer-review
A Knockout of Poly(ADP-Ribose) Polymerase 1 in a Human Cell Line: An Influence on Base Excision Repair Reactions in Cellular Extracts
Khodyreva, S. N., Ilina, E. S., Dyrkheeva, N. S., Kochetkova, A. S., Yamskikh, A. A., Maltseva, E. A., Malakhova, A. A., Medvedev, S. P., Zakian, S. M. & Lavrik, O. I., Feb 2024, In: Cells. 13, 4, 302.
Research output: Contribution to journal › Article › peer-review
ICTV Virus Taxonomy Profile: Filoviridae 2024
Biedenkopf, N., Bukreyev, A., Chandran, K., Di Paola, N., Formenty, P. B. H., Griffiths, A., Hume, A. J., Mühlberger, E., Netesov, S. V., Palacios, G., Pawęska, J. T., Smither, S., Takada, A., Wahl, V. & Kuhn, J. H., Feb 2024, In: Journal of General Virology. 105, 2, 2 p., 001955.
Research output: Contribution to journal › Article › peer-review
Sterile Fecal Microbiota Transplantation Boosts Anti-Inflammatory T-Cell Response in Ulcerative Colitis Patients
Chechushkov, A., Desyukevich, P., Yakovlev, T., Al Allaf, L., Shrainer, E., Morozov, V. & Tikunova, N., Feb 2024, In: International Journal of Molecular Sciences. 25, 3, 1886.
Research output: Contribution to journal › Article › peer-review
The Influence of Platinum Additives on the Activity and Stability of Rh-Containing Catalyst for the Conversion of Diesel Fuel into Synthesis Gas
Shilov, V. A., Burmatova, M. A., Belyaev, V. D., Potemkin, D. I. & Snytnikov, P. V., Feb 2024, In: Kinetics and Catalysis. 65, 1, p. 66-74 9 p.
Research output: Contribution to journal › Article › peer-review
8-Oxoadenine: A «New» Player of the Oxidative Stress in Mammals?
Kruchinin, A. A., Kamzeeva, P. N., Zharkov, D. O., Aralov, A. V. & Makarova, A. V., 22 Jan 2024, In: International Journal of Molecular Sciences. 25, 2, 1342.
Research output: Contribution to journal › Review article › peer-review
A non-canonical nucleotide from viral genomes interferes with the oxidative DNA damage repair system
Yudkina, A. V., Endutkin, A. V., Diatlova, E. A. & Zharkov, D. O., Jan 2024, In: DNA Repair. 133, 8 p., 103605.
Research output: Contribution to journal › Article › peer-review
Back-Up Base Excision DNA Repair in Human Cells Deficient in the Major AP Endonuclease, APE1
Kim, D. V., Diatlova, E. A., Zharkov, T. D., Melentyev, V. S., Yudkina, A. V., Endutkin, A. V. & Zharkov, D. O., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 64.
Research output: Contribution to journal › Article › peer-review
Coordination between human DNA polymerase β and apurinic/apyrimidinic endonuclease 1 in the course of DNA repair
Bakman, A. S., Boichenko, S. S., Kuznetsova, A. A., Ishchenko, A. A., Saparbaev, M. & Kuznetsov, N. A., Jan 2024, In: Biochimie. 216, p. 126-136 11 p.
Research output: Contribution to journal › Article › peer-review
Substrate Specificity Diversity of Human Terminal Deoxynucleotidyltransferase May Be a Naturally Programmed Feature Facilitating Its Biological Function
Kuznetsova, A. A., Senchurova, S. I., Gavrilova, A. A., Tyugashev, T. E., Mikushina, E. S. & Kuznetsov, N. A., Jan 2024, In: International Journal of Molecular Sciences. 25, 2, 879.
Research output: Contribution to journal › Article › peer-review
The Effectiveness of Co-Inoculation by Consortia of Microorganisms Depends on the Type of Plant and the Soil Microbiome
Sokolova, E. A., Mishukova, O. V., Hlistun, I. V., Tromenschleger, I. N., Tikunov, A. Y., Manakhov, A. D., Rogaev, E. I., Savenkov, O. A., Buyanova, M. D., Ivanov, I. V., Smirnova, N. V. & Voronina, E. N., Jan 2024, In: Plants. 13, 1, 116.
Research output: Contribution to journal › Article › peer-review
The Role of Key Amino Acids of the Human Fe(II)/2OG-Dependent Dioxygenase ALKBH3 in Structural Dynamics and Repair Activity toward Methylated DNA
Kanazhevskaya, L. Y., Gorbunov, A. A., Lukina, M. V., Smyshliaev, D. A., Zhdanova, P. V., Lomzov, A. A. & Koval, V. V., Jan 2024, In: International Journal of Molecular Sciences. 25, 2, 1145.
Research output: Contribution to journal › Article › peer-review
Aberrant Repair of 8-Oxoguanine in Short DNA Bulges
Eroshenko, D. A., Diatlova, E. A., Golyshev, V. M., Endutkin, A. V. & Zharkov, D. O., 2024, In: Doklady. Biochemistry and biophysics. 513, Suppl 1, p. S82-S86 5 p.
Research output: Contribution to journal › Article › peer-review
A comparison of two approaches for autosomal recessive diseases carrier screening
Sotnikova, E. A., Kiseleva, A. V., Kutsenko, V. A., Soplenkova, A., Zharikova, A. A., Ramensky, V. E., Вяткин, Ю. В., Ershova, A. I., Skirko, O. P., Zaicenoka, M., Pokrovskaya, M. S., Shalnova, S. A., Drapkina, O. M. & Meshkov, A. N., 2024, In: European journal of human genetics. 32, S1, p. 287 1 p., EP17.007.
Research output: Contribution to journal › Conference article › peer-review
Analysis of critical amino acid residues in the active center of a novel DNA glycosylase Fpg-like protein 1 Streptomyces coelicolor superfamily “helix-2-turn-helix” DNA glycosylase
Булгаков, Н. А., Юдкина, А. В., Жарков, Д. О. & Garcia-Diaz, M., 2024, BIOINFORMATICS OF GENOME REGULATION AND STRUCTURE / SYSTEMS BIOLOGY: Abstracts of the Fourteenth International Multiconference. Новосибирск: Институт цитологии и генетики СО РАН, p. 1971-1972 2 p.
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research
Bacteriophage Treatment of Infected Diabetic Foot Ulcers
Morozova, V. V., Kozlova, Y. N., Ganichev, D. A. & Tikunova, N. V., 2024, Methods in Molecular Biology. Azeredo, J. & Sillankorva, S. (eds.). 2 ed. Humana Press, Vol. 2734. p. 197-205 9 p. (Methods in Molecular Biology; vol. 2734).
Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review
Robust and Reproducible Protocol for Phage Genome "Rebooting" Using Transformation-Associated Recombination (TAR) Cloning into Yeast Centromeric Plasmid
Baykov, I., Kurchenko, O., Mikhaylova, E., Morozova, V. V. & Tikunova, N. V., 2024, Methods in Molecular Biology. Azeredo, J. & Sillankorva, S. (eds.). 2 ed. Humana Press, Vol. 2734. p. 301-317 17 p. (Methods in molecular biology (Clifton, N.J.)).
Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review
Successful Use of Phage and Antibiotics Therapy for the Eradication of Two Bacterial Pathogens from the Respiratory Tract of an Infant
Morozova, V. V., Kozlova, Y. N. & Tikunova, N. V., 2024, Methods in Molecular Biology. Azeredo, J. & Sillankorva, S. (eds.). 2 ed. Humana Press, Vol. 2734. p. 237-243 7 p. (Methods in molecular biology (Clifton, N.J.)).
Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review
The approaches for CRISPR/Cas9 regulation on the guide RNA level
Новопашина, Д. С., Саковина, Л. В., Горленко, Е. С., Должикова, О. А. & Мещанинова, М. И., 2024, BIOINFORMATICS OF GENOME REGULATION AND STRUCTURE / SYSTEMS BIOLOGY: Abstracts of the Fourteenth International Multiconference. Новосибирск: Институт цитологии и генетики СО РАН, p. 1724 1 p.
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research
Антибиотики
Кузнецов, Н. А. & Булыгин, А. А., 2024, Новосибирск: ИПЦ НГУ. 78 p.
Research output: Book/Report › Teaching materials › peer-review
Биологическая активность почвенных бактерий, стимулирующих рост растений: фиксация азота, солюбизация фосфата, синтез сидерофоров. Перспективы разработки микробных консорциумов
Timofeevа, А. М., Galyamovа, М. R. & Sedykh, S. E., 2024, In: Агрохимия. 5, p. 85-95 11 p.
Research output: Contribution to journal › Article › peer-review
Биомолекулы. Ч. 1. Аминокислоты и белки
Красников, А. С., Мызина, С. Д. & Исакова, С. В. (ed.), 2024, ИПЦ НГУ. 202 p.
Research output: Book/Report › Teaching manual › peer-review
ВСТРЕЧАЕМОСТЬ СЕРОТИПОВ АДЕНОВИРУСА СРЕДИ СЛУЧАЕВ ОРЗ В ГОРОДЕ ТАШКЕНТЕ РЕСПУБЛИКИ УЗБЕКИСТАН
Демина, Д. С., Бердиева, С. Б., Осипов, И. Д., Маслов, Д. Е., Васиховская, В. А., Забелина, Д. С., Рузметова, С. И., Камолходжаев, Д. А., Ибадуллаева, Н. С., Хикматуллаева, А. С., Мусабаев, Э. И., Кушакова, Д. Ш., Аглетдинов, Э. Ф. & Нетёсов, С. В., 2024, p. 39.
Research output: Contribution to conference › Abstract
ГЕНЕТИЧЕСКОЕ РАЗНООБРАЗИЕ АДЕНОВИРУСОВ СРЕДИ ПАЦИЕНТОВ В ГОРОДЕ ТАШКЕНТ РЕСПУБЛИКИ УЗБЕКИСТАН С ДИАГНОЗОМ ОРЗ
Демина, Д. С., Бердиева, С. Б., Осипов, И. Д., Маслов, Д. Е., Васиховская, В. А., Забелина, Д. С., Рузметова, С. И., Камолходжаев, Д. А., Ибадуллаева, Н. С., Хикматуллаева, А. С., Мусабаев, Э. И., Кушакова, Д. Ш., Аглетдинов, Э. Ф. & Нетёсов, С. В., 2024, p. 60.
Research output: Contribution to conference › Abstract
ГЕНЕТИЧЕСКОЕ РАЗНООБРАЗИЕ АДЕНОВИРУСОВ СРЕДИ ПАЦИЕНТОВ ГБУЗ НСО «ГИКБ № 1» И ГБУЗ НСО «ДГКБ № 3» г. НОВОСИБИРСКА С ДИАГНОЗОМ ОРЗ
Демина, Д. С., Бердиева, С. Б., Осипов, И. Д., Маслов, Д. Е., Комиссарова, Т. В., Макуха, В. В., Позднякова, Л. Л., Ульянова, Я. С., Томилова, Ю. Э., Аглетдинов, Э. Ф. & Нетёсов, С. В., 2024, p. 224-225. 1 p.
Research output: Contribution to conference › Abstract
Модифицированные фоторасщепляемые направляющие РНК для создания регулируемой системы CRISPR/Cas9
Саковина, Л. В., Горленко, Е. С., Жарков, Д. О. & Новопашина, Д. С., 2024, p. 68-69. 2 p.
Research output: Contribution to conference › Abstract
Молекулярно-генетический анализ персональных культур клеток увеальной меланомы
Zhilnikova, M. V., Atamanov, V. V., Zvereva, S. P., Gayner, T. A., Boyarskikh, U. A., Stanishevskaya, O. M., Chernykh, D. V., Kononova, N. V. & Koval', O. A., 2024, In: Fyodorov Journal of Ophthalmic Surgery. 140, 2s, p. 63-71 9 p., 8.
Research output: Contribution to journal › Article › peer-review
Основы белковой инженерии
Юдкина, А. В., Петрова, Д. В., Торгашева, Н. А., Вохтанцев, И. П., Дятлова, Е. А., Ендуткин, А. В., Байков, И. К., Дворникова, А. П. & Жарков, Д. О., 2024, Новосибирск: ИПЦ НГУ. 214 p.
Research output: Book/Report › Teaching materials › peer-review
Регуляция активности систем CRISPR/Cas9 на уровне направляющих РНК
Новопашина, Д. С., Горленко, Е. С., Должикова, О. А., Саковина, Л. В. & Мещанинова, М. И., 2024, ФИЗИКО-ХИМИЧЕСКАЯ БИОЛОГИЯ: Материалы V всероссийской конференции, приуроченной к 40-летию ИХБФМ СО РАН. Новосибирск: ООО "Офсет ТМ", p. 70
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research
Репликация ДНК эукариот
Белоусова, Е. А. & Дымшиц, Г. М., 2024, Новосибирск: ИПЦ НГУ. 102 p.
Research output: Book/Report › Teaching manual › peer-review
Сборник задач и упражнений по молекулярной биологии
Грин, И. Р., Воробьев, П. Е., Вохтанцев, И. П., Коваль, В. В., Коваль, О. А. & Жарков, Д. О., 2024, 72 p.
Research output: Book/Report › Teaching manual
Точность действия ДНК-полимераз на поврежденных и неповрежденных ДНК-матрицах при синтезе с вытеснением цепи
Чуприкова, М. С., Яковлев, А. О., Затеева, М. В., Юдкина, А. В. & Жарков, Д. О., 2024, ФИЗИКО-ХИМИЧЕСКАЯ БИОЛОГИЯ: Материалы V всероссийской конференции, приуроченной к 40-летию ИХБФМ СО РАН. Новосибирск: ООО "Офсет ТМ", p. 51 1 p.
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research
Фоторасщепляемые направляющие РНК для фоторегулируемой системы CRISPR/CAS9
Ахметова, Е., Вохтанцев, И. П., Мещанинова, М. И., Воробьева, М. А., Жарков, Д. О. & Новопашина, Д. С., 2024, In: Биоорганическая химия. 50, 4, p. 556-567 12 p.
Research output: Contribution to journal › Article › peer-review
Фоторегулируемые на уровне направляющей РНК системы CRISPR/Cas
Саковина, Л. В., Горленко, Е. С. & Новопашина, Д. С., 2024, In: Биофизика. 69, 3, p. 421-431 11 p.
Research output: Contribution to journal › Article › peer-review
Фоторегулируемые системы CRISPR/Cas9 с использованием фоточувствительных направляющих РНК
Горленко, Е. С., Саковина, Л. В. & Новопашина, Д. С., 2024, ФИЗИКО-ХИМИЧЕСКАЯ БИОЛОГИЯ: Материалы V всероссийской конференции, приуроченной к 40-летию ИХБФМ СО РАН. Новосибирск: ООО "Офсет ТМ", p. 87
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research
2023
Expanding the list of sequence-agnostic enzymes for chromatin conformation capture assays with S1 nuclease
Maria, G., Andrey, P., Artem, S., Nikita, T., Andrey, K., Evgeny, K., Oxana, R., Maxim, F. & Veniamin, F., 11 Dec 2023, In: Epigenetics & chromatin. 16, 1, 13 p., 48.
Research output: Contribution to journal › Article › peer-review
Exosomal Cargo in Ovarian Cancer Dissemination
Dzhugashvili, E. & Tamkovich, S., 7 Dec 2023, In: Current issues in molecular biology. 45, 12, p. 9851-9867 17 p., 31.
Research output: Contribution to journal › Review article › peer-review
A New Human Uveal Melanoma Cell Line: Melanin Production and Molecular Markers for Targeted Therapy
Zhilnikova, M. V., Novak, D. D., Troitskaya, O. S., Nushtaeva, A. A., Biryukov, M. M., Zvereva, S. P., Varlamov, M. E., Koval, V. V., Stanishevskaya, O. M., Chernikh, D. V., Kononova, N. V., Atamanov, V. V. & Koval, O. A., Dec 2023, In: Biochemistry (Moscow) Supplement Series B: Biomedical Chemistry. 17, 4, p. 165-171 7 p.
Research output: Contribution to journal › Article › peer-review
A Novel Podophage StenR_269 Suggests a New Family in the Class Caudoviricetes
Yakubovskij, V. I., Morozova, V. V., Kozlova, Y. N., Tikunov, A. Y., Babkin, I. V., Bardasheva, A. V., Zhirakovskaya, E. V., Baykov, I. K., Kaverina, G. B. & Tikunova, N. V., Dec 2023, In: Viruses. 15, 12, 2437.
Research output: Contribution to journal › Article › peer-review
Blood Plasma Circulating DNA-Protein Complexes: Involvement in Carcinogenesis and Prospects for Liquid Biopsy of Breast Cancer
Shefer, A., Tutanov, O., Belenikin, M., Tsentalovich, Y. P. & Tamkovich, S., Dec 2023, In: Journal of Personalized Medicine. 13, 12, 1691.
Research output: Contribution to journal › Article › peer-review
Hydrolysis of Oligodeoxyribonucleotides on the Microarray Surface and in Solution by Catalytic Anti-DNA Antibodies in Systemic Lupus Erythematosus
Novikova, T. S., Ermakov, E. A., Kostina, E. V., Sinyakov, A. N., Sizikov, A. E., Nevinsky, G. A. & Buneva, V. N., Dec 2023, In: Current issues in molecular biology. 45, 12, p. 9887-9903 17 p.
Research output: Contribution to journal › Article › peer-review
Plant Growth-Promoting Bacteria of Soil: Designing of Consortia Beneficial for Crop Production
Timofeeva, A. M., Galyamova, M. R. & Sedykh, S. E., Dec 2023, In: Microorganisms. 11, 12, 2864.
Research output: Contribution to journal › Review article › peer-review
Plant Growth-Promoting Soil Bacteria: Nitrogen Fixation, Phosphate Solubilization, Siderophore Production, and Other Biological Activities
Timofeeva, A. M., Галямова, М. Р. & Sedykh, S. E., Dec 2023, In: Plants. 12, 24, 4074.
Research output: Contribution to journal › Review article › peer-review
Self-Penetrating Oligonucleotide Derivatives: Features of Self-Assembly and Interactions with Serum and Intracellular Proteins
Bauer, I., Ilina, E., Zharkov, T., Grigorieva, E., Chinak, O., Kupryushkin, M., Golyshev, V., Mitin, D., Chubarov, A., Khodyreva, S. & Dmitrienko, E., Dec 2023, In: Pharmaceutics. 15, 12, 2779.
Research output: Contribution to journal › Article › peer-review
Pharmacokinetic study of Tdp1 inhibitor resulted in a significant increase in antitumor effect in the treatment of Lewis lung carcinoma in mice by its combination with topotecan
Okhina, A. A., Kornienko, T. E., Rogachev, A. D., Luzina, O. A., Popova, N. A., Nikolin, V. P., Zakharenko, A. L., Dyrkheeva, N. S., Pokrovsky, A. G., Salakhutdinov, N. F. & Lavrik, O. I., 30 Nov 2023, In: Journal of Pharmaceutical and Biomedical Analysis. 236, 9 p., 115731.
Research output: Contribution to journal › Article › peer-review
Cas9 is mostly orthogonal to human systems of DNA break sensing and repair
Maltseva, E. A., Vasil'eva, I. A., Moor, N. A., Kim, D. V., Dyrkheeva, N. S., Kutuzov, M. M., Vokhtantsev, I. P., Kulishova, L. M., Zharkov, D. O. & Lavrik, O. I., 29 Nov 2023, In: PLoS ONE. 18, 11, 26 p., e0294683.
Research output: Contribution to journal › Article › peer-review
Integration of fluorescence in situ hybridization and chromosome-length genome assemblies revealed synteny map for guinea pig, naked mole-rat, and human
Romanenko, S. A., Kliver, S. F., Serdyukova, N. A., Perelman, P. L., Trifonov, V. A., Seluanov, A., Gorbunova, V., Azpurua, J., Pereira, J. C., Ferguson-Smith, M. A. & Graphodatsky, A. S., 29 Nov 2023, In: Scientific Reports. 13, 1, 12 p., 21055.
Research output: Contribution to journal › Article › peer-review
BRACNAC: A BRCA1 and BRCA2 Copy Number Alteration Caller from Next-Generation Sequencing Data
Kechin, A., Boyarskikh, U., Borobova, V., Khrapov, E., Subbotin, S. & Filipenko, M., 22 Nov 2023, In: International Journal of Molecular Sciences. 24, 23, 16630.
Research output: Contribution to journal › Article › peer-review
A comparative investigation of equimolar Ni-, Ru-, Rh- and Pt-based composite structured catalysts for energy-efficient methane reforming
Ruban, N. V., Rogozhnikov, V. N., Stonkus, O. A., Emelyanov, V. A., Pakharukova, V. P., Svintsitskiy, D. A., Zazhigalov, S. V., Zagoruiko, A. N., Snytnikov, P. V., Sobyanin, V. A. & Potemkin, D. I., 15 Nov 2023, In: Fuel. 352, 14 p., 128973.
Research output: Contribution to journal › Article › peer-review
Methods for Assessment of Nucleotide Excision Repair Efficiency
Popov, A. A., Petruseva, I. O., Naumenko, N. V. & Lavrik, O. I., Nov 2023, In: Biochemistry (Moscow). 88, 11, p. 1844-1856 13 p.
Research output: Contribution to journal › Review article › peer-review
Response of PRIMPOL-Knockout Human Lung Adenocarcinoma A549 Cells to Genotoxic Stress
Gromova, A. S., Boldinova, E. O., Kim, D. V., Chuprov-Netochin, R. N., Leonov, S. V., Pustovalova, M. V., Zharkov, D. O. & Makarova, A. V., Nov 2023, In: Biochemistry (Moscow). 88, 11, p. 1933-1943 11 p.
Research output: Contribution to journal › Article › peer-review
The Molecular Basis for Selectivity of the Cytotoxic Response of Lung Adenocarcinoma Cells to Cold Atmospheric Plasma
Biryukov, M., Semenov, D., Kryachkova, N., Polyakova, A., Patrakova, E., Troitskaya, O., Milakhina, E., Poletaeva, J., Gugin, P., Ryabchikova, E., Zakrevsky, D., Schweigert, I. & Koval, O., Nov 2023, In: Biomolecules. 13, 11, 1672.
Research output: Contribution to journal › Article › peer-review
FUS RRM regulates poly(ADP-ribose) levels after transcriptional arrest and PARP-1 activation on DNA damage
Mamontova, E. M., Clément, M-J., Sukhanova, M. V., Joshi, V., Bouhss, A., Rengifo-Gonzalez, J. C., Desforges, B., Hamon, L., Lavrik, O. I. & Pastré, D., 31 Oct 2023, In: Cell Reports. 42, 10, 25 p., 113199.
Research output: Contribution to journal › Article › peer-review
Genomes of a Novel Group of Phages That Use Alternative Genetic Code Found in Human Gut Viromes
Babkin, I., Tikunov, A., Morozova, V., Matveev, A., Morozov, V. V. & Tikunova, N., 18 Oct 2023, In: International Journal of Molecular Sciences. 24, 20, 15302.
Research output: Contribution to journal › Article › peer-review
Bioinformatic Analysis Reveals the Role of Translation Elongation Efficiency Optimisation in the Evolution of Ralstonia Genus
Korenskaia, A. Y., Matushkin, Y. G., Mustafin, Z. S., Lashin, S. A. & Klimenko, A. I., 16 Oct 2023, In: Biology. 12, 10, 1338.
Research output: Contribution to journal › Article › peer-review
Historical Aspects of Restriction Endonucleases as Intelligent Scissors for Genetic Engineering
Alekseeva, I. V. & Kuznetsov, N. A., Oct 2023, In: Fermentation. 9, 10, 874.
Research output: Contribution to journal › Article › peer-review
Nickel-Based Ni–Ce1–xZrxO2 Catalysts Prepared by the Pechini Method for CO2 Methanation
Pakharukova, V. P., Stonkus, O. A., Kharchenko, N. A., Rogozhnikov, V. N., Chesalov, Y. A., Gorlova, A. M., Saraev, A. A. & Potemkin, D. I., Oct 2023, In: Kinetics and Catalysis. 64, 5, p. 671-682 12 p.
Research output: Contribution to journal › Article › peer-review
Direct Enzyme Engineering of B Family DNA Polymerases for Biotechnological Approaches
Kuznetsova, A. A. & Kuznetsov, N. A., 30 Sept 2023, In: Bioengineering (Basel, Switzerland). 10, 10, 1150.
Research output: Contribution to journal › Review article › peer-review
Base Excision DNA Repair in Plants: Arabidopsis and Beyond
Grin, I. R., Petrova, D. V., Endutkin, A. V., Ma, C., Yu, B., Li, H. & Zharkov, D. O., 29 Sept 2023, In: International Journal of Molecular Sciences. 24, 19, 14746.
Research output: Contribution to journal › Review article › peer-review
Identification of Antibody-Mediated Hydrolysis Sites of Oligopeptides Corresponding to the SARS-CoV-2 S-Protein by MALDI-TOF Mass Spectrometry
Timofeeva, A. M., Sedykh, S. E., Dmitrenok, P. S. & Nevinsky, G. A., 20 Sept 2023, In: International Journal of Molecular Sciences. 24, 18, 14342.
Research output: Contribution to journal › Article › peer-review
Natural Antibodies Produced in Vaccinated Patients and COVID-19 Convalescents Recognize and Hydrolyze Oligopeptides Corresponding to the S-Protein of SARS-CoV-2
Timofeeva, A. M., Sedykh, S. E., Sedykh, T. A. & Nevinsky, G. A., 15 Sept 2023, In: Vaccines. 11, 9, 1494.
Research output: Contribution to journal › Article › peer-review
Conformational Dynamics of Biopolymers in the Course of Their Interaction: Multifaceted Approaches to the Analysis by the Stopped-Flow Technique with Fluorescence Detection
Kuznetsov, N. A., Sept 2023, In: Photonics. 10, 9, 1033.
Research output: Contribution to journal › Article › peer-review
Novel B-Cell Epitopes of Non-Neutralizing Antibodies in the Receptor-Binding Domain of the SARS-CoV-2 S-Protein with Different Effects on the Severity of COVID-19
Matveev, A. L., Pyankov, O. V., Khlusevich, Y. A., Tyazhelkova, O. V., Emelyanova, L. A., Timofeeva, A. M., Shipovalov, A. V., Chechushkov, A. V., Zaitseva, N. S., Kudrov, G. A., Yusubalieva, G. M., Yussubaliyeva, S. M., Zhukova, O. A., Tikunov, A. Y., Baklaushev, V. P., Sedykh, S. E., Lifshits, G. I. & Tikunova, N. V., Sept 2023, In: Biochemistry (Moscow). 88, 9, p. 1205-1214 10 p.
Research output: Contribution to journal › Article › peer-review
Вирусы хорошие, вирусы плохие и… сосиски
Нетёсов, С. В., 31 Aug 2023, Наука и жизнь, 8.
Research output: Contribution to specialist publication › Featured article › Popular Science
Applicability of Diagnostic Criteria and High Prevalence of Familial Dysbetalipoproteinemia in Russia: A Pilot Study
Blokhina, A. V., Ershova, A. I., Kiseleva, A. V., Sotnikova, E. A., Zharikova, A. A., Zaicenoka, M., Vyatkin, Y. V., Ramensky, V. E., Kutsenko, V. A., Shalnova, S. A., Meshkov, A. N. & Drapkina, O. M., 24 Aug 2023, In: International Journal of Molecular Sciences. 24, 17, 13159.
Research output: Contribution to journal › Article › peer-review
Renaming of genera Ebolavirus and Marburgvirus to Orthoebolavirus and Orthomarburgvirus, respectively, and introduction of binomial species names within family Filoviridae
Biedenkopf, N., Bukreyev, A., Chandran, K., Di Paola, N., Formenty, P. B. H., Griffiths, A., Hume, A. J., Mühlberger, E., Netesov, S. V., Palacios, G., Pawęska, J. T., Smither, S., Takada, A., Wahl, V. & Kuhn, J. H., 3 Aug 2023, In: Archives of Virology. 168, 8, 6 p., 220.
Research output: Contribution to journal › Article › peer-review
Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)
ICTV Report Consortium & Нетёсов, С. В., 1 Aug 2023, In: Journal of General Virology. 104, 8, 55 p.
Research output: Contribution to journal › Article › peer-review
Alternative Mechanisms of Mutagenesis at mCpG Sites during Replication and Repair
Shilkin, E. S., Petrova, D. V., Zharkov, D. O. & Makarova, A. V., Aug 2023, In: Molecular Biology. 57, 4, p. 584-592 9 p.
Research output: Contribution to journal › Article › peer-review
Ceria–Zirconia Supported Platinum Catalysts for the Water-Gas Shift Reaction: The Influence of Support Composition
Gorlova, A. M., Pakharukova, V. P., Stonkus, O. A., Rogozhnikov, V. N., Gladky, A. Y., Snytnikov, P. V. & Potemkin, D. I., Aug 2023, In: Kinetics and Catalysis. 64, 4, p. 449-457 9 p.
Research output: Contribution to journal › Article › peer-review
Structure of an Ice-Binding Protein from Myoxocephalus octodecemspinosus Determined by Molecular Dynamics and Based on Circular Dichroism Spectra
Oleinik, G. A., Zhdanova, P., Koval, V. V., Chernonosov, A. A. & Baranova, S. V., Aug 2023, In: Biophysics (Russian Federation). 68, 4, p. 513-518 6 p., 2.
Research output: Contribution to journal › Article › peer-review
Vertical Distribution of Communities of Epiphytic Myxomycetes on Woody Introduced Plants in Siberia
Vlasenko, A. V., Tomoshevich, M. A. & Chelobanov, B. P., Aug 2023, In: Contemporary Problems of Ecology. 16, 4, p. 466-478 13 p.
Research output: Contribution to journal › Article › peer-review
Metal-oxide catalysts for CO TOX and PROX processes in the Pt–Cr/Mo/W systems
Lagunova, V., Filatov, E., Plyusnin, P., Kostin, G., Urlukov, A., Potemkin, D. & Korenev, S., 29 Jul 2023, In: International Journal of Hydrogen Energy. 48, 64, p. 25133-25143 11 p.
Research output: Contribution to journal › Article › peer-review
Inner Amino Acid Contacts Are Key Factors of Multistage Structural Rearrangements of DNA and Affect Substrate Specificity of Apurinic/Apyrimidinic Endonuclease APE1
Bulygin, A. A., Syryamina, V. N., Kuznetsova, A. A., Novopashina, D. S., Dzuba, S. A. & Kuznetsov, N. A., 14 Jul 2023, In: International Journal of Molecular Sciences. 24, 14, 11474.
Research output: Contribution to journal › Article › peer-review
Individual Contributions of Amido Acid Residues Tyr122, Ile168, and Asp173 to the Activity and Substrate Specificity of Human DNA Dioxygenase ABH2
Davletgildeeva, A. T., Tyugashev, T. E., Zhao, M., Kuznetsov, N. A., Ishchenko, A. A., Saparbaev, M. & Kuznetsova, A. A., 13 Jul 2023, In: Cells. 12, 14, 1839.
Research output: Contribution to journal › Article › peer-review
Double oxalates of Rh(III) with Ni(II) and Co(II) – Effective precursors of nanoalloys for hydrocarbons steam reforming
Zadesenets, A. V., Garkul, I. A., Filatov, E. Y., Sukhikh, A. S., Plusnin, P. E., Urlukov, A. S., Uskov, S. I., Potemkin, D. I. & Korenev, S. V., 12 Jul 2023, In: International Journal of Hydrogen Energy. 48, 59, p. 22428-22438 11 p.
Research output: Contribution to journal › Article › peer-review
Abasic site-peptide cross-links are blocking lesions repaired by AP endonucleases
Yudkina, A. V., Bulgakov, N. A., Kim, D. V., Baranova, S. V., Ishchenko, A. A., Saparbaev, M. K., Koval, V. V. & Zharkov, D. O., 7 Jul 2023, In: Nucleic Acids Research. 51, 12, p. 6321-6336 16 p., gkad423.
Research output: Contribution to journal › Article › peer-review
Cloning, Expression, and Characterization of Family A DNA Polymerase from Massilia aurea
Kuznetsova, A. A., Bedritskikh, K. S., Bulygin, A. A. & Kuznetsov, N. A., Jul 2023, In: Fermentation. 9, 7, 650.
Research output: Contribution to journal › Article › peer-review
Bypass of Abasic Site-Peptide Cross-Links by Human Repair and Translesion DNA Polymerases
Yudkina, A. V., Barmatov, A. E., Bulgakov, N. A., Boldinova, E. O., Shilkin, E. S., Makarova, A. V. & Zharkov, D. O., 29 Jun 2023, In: International Journal of Molecular Sciences. 24, 13, 10877.
Research output: Contribution to journal › Article › peer-review
Antibodies Capable of Enhancing SARS-CoV-2 Infection Can Circulate in Patients with Severe COVID-19
Matveev, A., Pyankov, O., Khlusevich, Y., Tyazhelkova, O., Emelyanova, L., Timofeeva, A., Shipovalov, A., Chechushkov, A., Zaitseva, N., Kudrov, G., Yusubalieva, G., Yussubaliyeva, S., Zhukova, O., Baklaushev, V., Sedykh, S., Lifshits, G., Tikunov, A. & Tikunova, N., 28 Jun 2023, In: International Journal of Molecular Sciences. 24, 13, 10799.
Research output: Contribution to journal › Article › peer-review
Milk Exosomes: Next-Generation Agents for Delivery of Anticancer Drugs and Therapeutic Nucleic Acids
Timofeeva, A. M., Paramonik, A. P., Sedykh, S. S. & Nevinsky, G. A., 15 Jun 2023, In: International Journal of Molecular Sciences. 24, 12, 10194.
Research output: Contribution to journal › Review article › peer-review
Genome-wide analysis of WD40 protein family and functional characterization of BvWD40-82 in sugar beet
Wu, Z., Zhang, T., Li, J., Chen, S., Grin, I. R., Zharkov, D. O., Yu, B. & Li, H., 2 Jun 2023, In: Frontiers in Plant Science. 14, 1185440.
Research output: Contribution to journal › Article › peer-review
Cytotoxic Activity of a Cold Atmospheric Plasma Jet in Relation to a 3D Cell Model of Human Breast Cancer
Patrakova, E. A., Biryukov, M. M., Troitskaya, O. S., Novak, D. D., Milakhina, E. V., Gugin, P. P., Zakrevsky, D. E., Schweigert, I. V. & Koval, O. A., Jun 2023, In: Cell and Tissue Biology. 17, 3, p. 233-246 14 p.
Research output: Contribution to journal › Article › peer-review
Monoclonal Antibody Panel for Hepatitis B Virus Genotype and HBsAg Subtype Identification: Results Obtained for Blood-Serum Samples from Three Regions of Russia
Bezuglova, L. V., Sergeeva, E. I., Voevodskaya, L. Y., Lysykh, E. E., Polovitsa, N. V., Deliy, I. V., Ivanov, M. K., Netesova, I. G. & Netesov, S. V., Jun 2023, In: Molecular Genetics, Microbiology and Virology. 38, 2, p. 95-100 6 p.
Research output: Contribution to journal › Article › peer-review
Identification, Characterization, and Genome Analysis of Two Novel Temperate Pseudomonas protegens Phages PseuP_222 and PseuP_224
Morozova, V., Kozlova, Y., Tikunov, A., Babkin, I., Ushakova, T., Bardasheva, A., Jdeed, G., Zhirakovskaya, E., Mogileva, A., Netesov, S. & Tikunova, N., 31 May 2023, In: Microorganisms. 11, 6, 1456.
Research output: Contribution to journal › Article › peer-review

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