Section of Molecular Biology and Biotechnology - Research output

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2024
Sterile Fecal Microbiota Transplantation Boosts Anti-Inflammatory T-Cell Response in Ulcerative Colitis Patients
Chechushkov, A., Desyukevich, P., Yakovlev, T., Al Allaf, L., Shrainer, E., Morozov, V. & Tikunova, N., Feb 2024, In: International Journal of Molecular Sciences. 25, 3, 1886.
Research output: Contribution to journal › Article › peer-review
The Influence of Platinum Additives on the Activity and Stability of Rh-Containing Catalyst for the Conversion of Diesel Fuel into Synthesis Gas
Shilov, V. A., Burmatova, M. A., Belyaev, V. D., Potemkin, D. I. & Snytnikov, P. V., Feb 2024, In: Kinetics and Catalysis. 65, 1, p. 66-74 9 p.
Research output: Contribution to journal › Article › peer-review
8-Oxoadenine: A «New» Player of the Oxidative Stress in Mammals?
Kruchinin, A. A., Kamzeeva, P. N., Zharkov, D. O., Aralov, A. V. & Makarova, A. V., 22 Jan 2024, In: International Journal of Molecular Sciences. 25, 2, 1342.
Research output: Contribution to journal › Review article › peer-review
A non-canonical nucleotide from viral genomes interferes with the oxidative DNA damage repair system
Yudkina, A. V., Endutkin, A. V., Diatlova, E. A. & Zharkov, D. O., Jan 2024, In: DNA Repair. 133, 8 p., 103605.
Research output: Contribution to journal › Article › peer-review
Back-Up Base Excision DNA Repair in Human Cells Deficient in the Major AP Endonuclease, APE1
Kim, D. V., Diatlova, E. A., Zharkov, T. D., Melentyev, V. S., Yudkina, A. V., Endutkin, A. V. & Zharkov, D. O., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 64.
Research output: Contribution to journal › Article › peer-review
Coordination between human DNA polymerase β and apurinic/apyrimidinic endonuclease 1 in the course of DNA repair
Bakman, A. S., Boichenko, S. S., Kuznetsova, A. A., Ishchenko, A. A., Saparbaev, M. & Kuznetsov, N. A., Jan 2024, In: Biochimie. 216, p. 126-136 11 p.
Research output: Contribution to journal › Article › peer-review
Substrate Specificity Diversity of Human Terminal Deoxynucleotidyltransferase May Be a Naturally Programmed Feature Facilitating Its Biological Function
Kuznetsova, A. A., Senchurova, S. I., Gavrilova, A. A., Tyugashev, T. E., Mikushina, E. S. & Kuznetsov, N. A., Jan 2024, In: International Journal of Molecular Sciences. 25, 2, 879.
Research output: Contribution to journal › Article › peer-review
The Effectiveness of Co-Inoculation by Consortia of Microorganisms Depends on the Type of Plant and the Soil Microbiome
Sokolova, E. A., Mishukova, O. V., Hlistun, I. V., Tromenschleger, I. N., Tikunov, A. Y., Manakhov, A. D., Rogaev, E. I., Savenkov, O. A., Buyanova, M. D., Ivanov, I. V., Smirnova, N. V. & Voronina, E. N., Jan 2024, In: Plants. 13, 1, 116.
Research output: Contribution to journal › Article › peer-review
The Role of Key Amino Acids of the Human Fe(II)/2OG-Dependent Dioxygenase ALKBH3 in Structural Dynamics and Repair Activity toward Methylated DNA
Kanazhevskaya, L. Y., Gorbunov, A. A., Lukina, M. V., Smyshliaev, D. A., Zhdanova, P. V., Lomzov, A. A. & Koval, V. V., Jan 2024, In: International Journal of Molecular Sciences. 25, 2, 1145.
Research output: Contribution to journal › Article › peer-review
Aberrant Repair of 8-Oxoguanine in Short DNA Bulges
Eroshenko, D. A., Diatlova, E. A., Golyshev, V. M., Endutkin, A. V. & Zharkov, D. O., 2024, In: Doklady. Biochemistry and biophysics. 513, Suppl 1, p. S82-S86 5 p.
Research output: Contribution to journal › Article › peer-review
A comparison of two approaches for autosomal recessive diseases carrier screening
Sotnikova, E. A., Kiseleva, A. V., Kutsenko, V. A., Soplenkova, A., Zharikova, A. A., Ramensky, V. E., Вяткин, Ю. В., Ershova, A. I., Skirko, O. P., Zaicenoka, M., Pokrovskaya, M. S., Shalnova, S. A., Drapkina, O. M. & Meshkov, A. N., 2024, In: European journal of human genetics. 32, S1, p. 287 1 p., EP17.007.
Research output: Contribution to journal › Conference article › peer-review
Analysis of critical amino acid residues in the active center of a novel DNA glycosylase Fpg-like protein 1 Streptomyces coelicolor superfamily “helix-2-turn-helix” DNA glycosylase
Булгаков, Н. А., Юдкина, А. В., Жарков, Д. О. & Garcia-Diaz, M., 2024, BIOINFORMATICS OF GENOME REGULATION AND STRUCTURE / SYSTEMS BIOLOGY: Abstracts of the Fourteenth International Multiconference. Новосибирск: Институт цитологии и генетики СО РАН, p. 1971-1972 2 p.
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research
Bacteriophage Treatment of Infected Diabetic Foot Ulcers
Morozova, V. V., Kozlova, Y. N., Ganichev, D. A. & Tikunova, N. V., 2024, Methods in Molecular Biology. Azeredo, J. & Sillankorva, S. (eds.). 2 ed. Humana Press, Vol. 2734. p. 197-205 9 p. (Methods in Molecular Biology; vol. 2734).
Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review
Robust and Reproducible Protocol for Phage Genome "Rebooting" Using Transformation-Associated Recombination (TAR) Cloning into Yeast Centromeric Plasmid
Baykov, I., Kurchenko, O., Mikhaylova, E., Morozova, V. V. & Tikunova, N. V., 2024, Methods in Molecular Biology. Azeredo, J. & Sillankorva, S. (eds.). 2 ed. Humana Press, Vol. 2734. p. 301-317 17 p. (Methods in molecular biology (Clifton, N.J.)).
Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review
Successful Use of Phage and Antibiotics Therapy for the Eradication of Two Bacterial Pathogens from the Respiratory Tract of an Infant
Morozova, V. V., Kozlova, Y. N. & Tikunova, N. V., 2024, Methods in Molecular Biology. Azeredo, J. & Sillankorva, S. (eds.). 2 ed. Humana Press, Vol. 2734. p. 237-243 7 p. (Methods in molecular biology (Clifton, N.J.)).
Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review
The approaches for CRISPR/Cas9 regulation on the guide RNA level
Новопашина, Д. С., Саковина, Л. В., Горленко, Е. С., Должикова, О. А. & Мещанинова, М. И., 2024, BIOINFORMATICS OF GENOME REGULATION AND STRUCTURE / SYSTEMS BIOLOGY: Abstracts of the Fourteenth International Multiconference. Новосибирск: Институт цитологии и генетики СО РАН, p. 1724 1 p.
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research
Антибиотики
Кузнецов, Н. А. & Булыгин, А. А., 2024, Новосибирск: ИПЦ НГУ. 78 p.
Research output: Book/Report › Teaching materials › peer-review
Биомолекулы. Ч. 1. Аминокислоты и белки
Красников, А. С., Мызина, С. Д. & Исакова, С. В. (ed.), 2024, ИПЦ НГУ. 202 p.
Research output: Book/Report › Teaching manual › peer-review
ВСТРЕЧАЕМОСТЬ СЕРОТИПОВ АДЕНОВИРУСА СРЕДИ СЛУЧАЕВ ОРЗ В ГОРОДЕ ТАШКЕНТЕ РЕСПУБЛИКИ УЗБЕКИСТАН
Демина, Д. С., Бердиева, С. Б., Осипов, И. Д., Маслов, Д. Е., Васиховская, В. А., Забелина, Д. С., Рузметова, С. И., Камолходжаев, Д. А., Ибадуллаева, Н. С., Хикматуллаева, А. С., Мусабаев, Э. И., Кушакова, Д. Ш., Аглетдинов, Э. Ф. & Нетёсов, С. В., 2024, p. 39.
Research output: Contribution to conference › Abstract
ГЕНЕТИЧЕСКОЕ РАЗНООБРАЗИЕ АДЕНОВИРУСОВ СРЕДИ ПАЦИЕНТОВ В ГОРОДЕ ТАШКЕНТ РЕСПУБЛИКИ УЗБЕКИСТАН С ДИАГНОЗОМ ОРЗ
Демина, Д. С., Бердиева, С. Б., Осипов, И. Д., Маслов, Д. Е., Васиховская, В. А., Забелина, Д. С., Рузметова, С. И., Камолходжаев, Д. А., Ибадуллаева, Н. С., Хикматуллаева, А. С., Мусабаев, Э. И., Кушакова, Д. Ш., Аглетдинов, Э. Ф. & Нетёсов, С. В., 2024, p. 60.
Research output: Contribution to conference › Abstract
ГЕНЕТИЧЕСКОЕ РАЗНООБРАЗИЕ АДЕНОВИРУСОВ СРЕДИ ПАЦИЕНТОВ ГБУЗ НСО «ГИКБ № 1» И ГБУЗ НСО «ДГКБ № 3» г. НОВОСИБИРСКА С ДИАГНОЗОМ ОРЗ
Демина, Д. С., Бердиева, С. Б., Осипов, И. Д., Маслов, Д. Е., Комиссарова, Т. В., Макуха, В. В., Позднякова, Л. Л., Ульянова, Я. С., Томилова, Ю. Э., Аглетдинов, Э. Ф. & Нетёсов, С. В., 2024, p. 224-225. 1 p.
Research output: Contribution to conference › Abstract
Модифицированные фоторасщепляемые направляющие РНК для создания регулируемой системы CRISPR/Cas9
Саковина, Л. В., Горленко, Е. С., Жарков, Д. О. & Новопашина, Д. С., 2024, p. 68-69. 2 p.
Research output: Contribution to conference › Abstract
Молекулярно-генетический анализ персональных культур клеток увеальной меланомы
Zhilnikova, M. V., Atamanov, V. V., Zvereva, S. P., Gayner, T. A., Boyarskikh, U. A., Stanishevskaya, O. M., Chernykh, D. V., Kononova, N. V. & Koval', O. A., 2024, In: Fyodorov Journal of Ophthalmic Surgery. 140, 2s, p. 63-71 9 p., 8.
Research output: Contribution to journal › Article › peer-review
Основы белковой инженерии
Юдкина, А. В., Петрова, Д. В., Торгашева, Н. А., Вохтанцев, И. П., Дятлова, Е. А., Ендуткин, А. В., Байков, И. К., Дворникова, А. П. & Жарков, Д. О., 2024, Новосибирск: ИПЦ НГУ. 214 p.
Research output: Book/Report › Teaching materials › peer-review
Регуляция активности систем CRISPR/Cas9 на уровне направляющих РНК
Новопашина, Д. С., Горленко, Е. С., Должикова, О. А., Саковина, Л. В. & Мещанинова, М. И., 2024, ФИЗИКО-ХИМИЧЕСКАЯ БИОЛОГИЯ: Материалы V всероссийской конференции, приуроченной к 40-летию ИХБФМ СО РАН. Новосибирск: ООО "Офсет ТМ", p. 70
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research
Репликация ДНК эукариот
Белоусова, Е. А. & Дымшиц, Г. М., 2024, Новосибирск: ИПЦ НГУ. 102 p.
Research output: Book/Report › Teaching manual › peer-review
Сборник задач и упражнений по молекулярной биологии
Грин, И. Р., Воробьев, П. Е., Вохтанцев, И. П., Коваль, В. В., Коваль, О. А. & Жарков, Д. О., 2024, 72 p.
Research output: Book/Report › Teaching manual
Точность действия ДНК-полимераз на поврежденных и неповрежденных ДНК-матрицах при синтезе с вытеснением цепи
Чуприкова, М. С., Яковлев, А. О., Затеева, М. В., Юдкина, А. В. & Жарков, Д. О., 2024, ФИЗИКО-ХИМИЧЕСКАЯ БИОЛОГИЯ: Материалы V всероссийской конференции, приуроченной к 40-летию ИХБФМ СО РАН. Новосибирск: ООО "Офсет ТМ", p. 51 1 p.
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research
Фоторегулируемые на уровне направляющей РНК системы CRISPR/Cas
Саковина, Л. В., Горленко, Е. С. & Новопашина, Д. С., 2024, In: Биофизика. 69, 3, p. 421-431 11 p.
Research output: Contribution to journal › Article › peer-review
Фоторегулируемые системы CRISPR/Cas9 с использованием фоточувствительных направляющих РНК
Горленко, Е. С., Саковина, Л. В. & Новопашина, Д. С., 2024, ФИЗИКО-ХИМИЧЕСКАЯ БИОЛОГИЯ: Материалы V всероссийской конференции, приуроченной к 40-летию ИХБФМ СО РАН. Новосибирск: ООО "Офсет ТМ", p. 87
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research
2023
Expanding the list of sequence-agnostic enzymes for chromatin conformation capture assays with S1 nuclease
Maria, G., Andrey, P., Artem, S., Nikita, T., Andrey, K., Evgeny, K., Oxana, R., Maxim, F. & Veniamin, F., 11 Dec 2023, In: Epigenetics & chromatin. 16, 1, 13 p., 48.
Research output: Contribution to journal › Article › peer-review
Exosomal Cargo in Ovarian Cancer Dissemination
Dzhugashvili, E. & Tamkovich, S., 7 Dec 2023, In: Current issues in molecular biology. 45, 12, p. 9851-9867 17 p., 31.
Research output: Contribution to journal › Review article › peer-review
A New Human Uveal Melanoma Cell Line: Melanin Production and Molecular Markers for Targeted Therapy
Zhilnikova, M. V., Novak, D. D., Troitskaya, O. S., Nushtaeva, A. A., Biryukov, M. M., Zvereva, S. P., Varlamov, M. E., Koval, V. V., Stanishevskaya, O. M., Chernikh, D. V., Kononova, N. V., Atamanov, V. V. & Koval, O. A., Dec 2023, In: Biochemistry (Moscow) Supplement Series B: Biomedical Chemistry. 17, 4, p. 165-171 7 p.
Research output: Contribution to journal › Article › peer-review
A Novel Podophage StenR_269 Suggests a New Family in the Class Caudoviricetes
Yakubovskij, V. I., Morozova, V. V., Kozlova, Y. N., Tikunov, A. Y., Babkin, I. V., Bardasheva, A. V., Zhirakovskaya, E. V., Baykov, I. K., Kaverina, G. B. & Tikunova, N. V., Dec 2023, In: Viruses. 15, 12, 2437.
Research output: Contribution to journal › Article › peer-review
Blood Plasma Circulating DNA-Protein Complexes: Involvement in Carcinogenesis and Prospects for Liquid Biopsy of Breast Cancer
Shefer, A., Tutanov, O., Belenikin, M., Tsentalovich, Y. P. & Tamkovich, S., Dec 2023, In: Journal of Personalized Medicine. 13, 12, 1691.
Research output: Contribution to journal › Article › peer-review
Hydrolysis of Oligodeoxyribonucleotides on the Microarray Surface and in Solution by Catalytic Anti-DNA Antibodies in Systemic Lupus Erythematosus
Novikova, T. S., Ermakov, E. A., Kostina, E. V., Sinyakov, A. N., Sizikov, A. E., Nevinsky, G. A. & Buneva, V. N., Dec 2023, In: Current issues in molecular biology. 45, 12, p. 9887-9903 17 p.
Research output: Contribution to journal › Article › peer-review
Plant Growth-Promoting Bacteria of Soil: Designing of Consortia Beneficial for Crop Production
Timofeeva, A. M., Galyamova, M. R. & Sedykh, S. E., Dec 2023, In: Microorganisms. 11, 12, 2864.
Research output: Contribution to journal › Review article › peer-review
Plant Growth-Promoting Soil Bacteria: Nitrogen Fixation, Phosphate Solubilization, Siderophore Production, and Other Biological Activities
Timofeeva, A. M., Галямова, М. Р. & Sedykh, S. E., Dec 2023, In: Plants. 12, 24, 4074.
Research output: Contribution to journal › Review article › peer-review
Self-Penetrating Oligonucleotide Derivatives: Features of Self-Assembly and Interactions with Serum and Intracellular Proteins
Bauer, I., Ilina, E., Zharkov, T., Grigorieva, E., Chinak, O., Kupryushkin, M., Golyshev, V., Mitin, D., Chubarov, A., Khodyreva, S. & Dmitrienko, E., Dec 2023, In: Pharmaceutics. 15, 12, 2779.
Research output: Contribution to journal › Article › peer-review
Pharmacokinetic study of Tdp1 inhibitor resulted in a significant increase in antitumor effect in the treatment of Lewis lung carcinoma in mice by its combination with topotecan
Okhina, A. A., Kornienko, T. E., Rogachev, A. D., Luzina, O. A., Popova, N. A., Nikolin, V. P., Zakharenko, A. L., Dyrkheeva, N. S., Pokrovsky, A. G., Salakhutdinov, N. F. & Lavrik, O. I., 30 Nov 2023, In: Journal of Pharmaceutical and Biomedical Analysis. 236, 9 p., 115731.
Research output: Contribution to journal › Article › peer-review
Cas9 is mostly orthogonal to human systems of DNA break sensing and repair
Maltseva, E. A., Vasil'eva, I. A., Moor, N. A., Kim, D. V., Dyrkheeva, N. S., Kutuzov, M. M., Vokhtantsev, I. P., Kulishova, L. M., Zharkov, D. O. & Lavrik, O. I., 29 Nov 2023, In: PLoS ONE. 18, 11, 26 p., e0294683.
Research output: Contribution to journal › Article › peer-review
Integration of fluorescence in situ hybridization and chromosome-length genome assemblies revealed synteny map for guinea pig, naked mole-rat, and human
Romanenko, S. A., Kliver, S. F., Serdyukova, N. A., Perelman, P. L., Trifonov, V. A., Seluanov, A., Gorbunova, V., Azpurua, J., Pereira, J. C., Ferguson-Smith, M. A. & Graphodatsky, A. S., 29 Nov 2023, In: Scientific Reports. 13, 1, 12 p., 21055.
Research output: Contribution to journal › Article › peer-review
BRACNAC: A BRCA1 and BRCA2 Copy Number Alteration Caller from Next-Generation Sequencing Data
Kechin, A., Boyarskikh, U., Borobova, V., Khrapov, E., Subbotin, S. & Filipenko, M., 22 Nov 2023, In: International Journal of Molecular Sciences. 24, 23, 16630.
Research output: Contribution to journal › Article › peer-review
A comparative investigation of equimolar Ni-, Ru-, Rh- and Pt-based composite structured catalysts for energy-efficient methane reforming
Ruban, N. V., Rogozhnikov, V. N., Stonkus, O. A., Emelyanov, V. A., Pakharukova, V. P., Svintsitskiy, D. A., Zazhigalov, S. V., Zagoruiko, A. N., Snytnikov, P. V., Sobyanin, V. A. & Potemkin, D. I., 15 Nov 2023, In: Fuel. 352, 14 p., 128973.
Research output: Contribution to journal › Article › peer-review
Methods for Assessment of Nucleotide Excision Repair Efficiency
Popov, A. A., Petruseva, I. O., Naumenko, N. V. & Lavrik, O. I., Nov 2023, In: Biochemistry (Moscow). 88, 11, p. 1844-1856 13 p.
Research output: Contribution to journal › Review article › peer-review
Response of PRIMPOL-Knockout Human Lung Adenocarcinoma A549 Cells to Genotoxic Stress
Gromova, A. S., Boldinova, E. O., Kim, D. V., Chuprov-Netochin, R. N., Leonov, S. V., Pustovalova, M. V., Zharkov, D. O. & Makarova, A. V., Nov 2023, In: Biochemistry (Moscow). 88, 11, p. 1933-1943 11 p.
Research output: Contribution to journal › Article › peer-review
The Molecular Basis for Selectivity of the Cytotoxic Response of Lung Adenocarcinoma Cells to Cold Atmospheric Plasma
Biryukov, M., Semenov, D., Kryachkova, N., Polyakova, A., Patrakova, E., Troitskaya, O., Milakhina, E., Poletaeva, J., Gugin, P., Ryabchikova, E., Zakrevsky, D., Schweigert, I. & Koval, O., Nov 2023, In: Biomolecules. 13, 11, 1672.
Research output: Contribution to journal › Article › peer-review
FUS RRM regulates poly(ADP-ribose) levels after transcriptional arrest and PARP-1 activation on DNA damage
Mamontova, E. M., Clément, M-J., Sukhanova, M. V., Joshi, V., Bouhss, A., Rengifo-Gonzalez, J. C., Desforges, B., Hamon, L., Lavrik, O. I. & Pastré, D., 31 Oct 2023, In: Cell Reports. 42, 10, 25 p., 113199.
Research output: Contribution to journal › Article › peer-review
Genomes of a Novel Group of Phages That Use Alternative Genetic Code Found in Human Gut Viromes
Babkin, I., Tikunov, A., Morozova, V., Matveev, A., Morozov, V. V. & Tikunova, N., 18 Oct 2023, In: International Journal of Molecular Sciences. 24, 20, 15302.
Research output: Contribution to journal › Article › peer-review
Bioinformatic Analysis Reveals the Role of Translation Elongation Efficiency Optimisation in the Evolution of Ralstonia Genus
Korenskaia, A. Y., Matushkin, Y. G., Mustafin, Z. S., Lashin, S. A. & Klimenko, A. I., 16 Oct 2023, In: Biology. 12, 10, 1338.
Research output: Contribution to journal › Article › peer-review
Historical Aspects of Restriction Endonucleases as Intelligent Scissors for Genetic Engineering
Alekseeva, I. V. & Kuznetsov, N. A., Oct 2023, In: Fermentation. 9, 10, 874.
Research output: Contribution to journal › Article › peer-review
Nickel-Based Ni–Ce1–xZrxO2 Catalysts Prepared by the Pechini Method for CO2 Methanation
Pakharukova, V. P., Stonkus, O. A., Kharchenko, N. A., Rogozhnikov, V. N., Chesalov, Y. A., Gorlova, A. M., Saraev, A. A. & Potemkin, D. I., Oct 2023, In: Kinetics and Catalysis. 64, 5, p. 671-682 12 p.
Research output: Contribution to journal › Article › peer-review
Direct Enzyme Engineering of B Family DNA Polymerases for Biotechnological Approaches
Kuznetsova, A. A. & Kuznetsov, N. A., 30 Sept 2023, In: Bioengineering (Basel, Switzerland). 10, 10, 1150.
Research output: Contribution to journal › Review article › peer-review
Base Excision DNA Repair in Plants: Arabidopsis and Beyond
Grin, I. R., Petrova, D. V., Endutkin, A. V., Ma, C., Yu, B., Li, H. & Zharkov, D. O., 29 Sept 2023, In: International Journal of Molecular Sciences. 24, 19, 14746.
Research output: Contribution to journal › Review article › peer-review
Identification of Antibody-Mediated Hydrolysis Sites of Oligopeptides Corresponding to the SARS-CoV-2 S-Protein by MALDI-TOF Mass Spectrometry
Timofeeva, A. M., Sedykh, S. E., Dmitrenok, P. S. & Nevinsky, G. A., 20 Sept 2023, In: International Journal of Molecular Sciences. 24, 18, 14342.
Research output: Contribution to journal › Article › peer-review
Natural Antibodies Produced in Vaccinated Patients and COVID-19 Convalescents Recognize and Hydrolyze Oligopeptides Corresponding to the S-Protein of SARS-CoV-2
Timofeeva, A. M., Sedykh, S. E., Sedykh, T. A. & Nevinsky, G. A., 15 Sept 2023, In: Vaccines. 11, 9, 1494.
Research output: Contribution to journal › Article › peer-review
Conformational Dynamics of Biopolymers in the Course of Their Interaction: Multifaceted Approaches to the Analysis by the Stopped-Flow Technique with Fluorescence Detection
Kuznetsov, N. A., Sept 2023, In: Photonics. 10, 9, 1033.
Research output: Contribution to journal › Article › peer-review
Novel B-Cell Epitopes of Non-Neutralizing Antibodies in the Receptor-Binding Domain of the SARS-CoV-2 S-Protein with Different Effects on the Severity of COVID-19
Matveev, A. L., Pyankov, O. V., Khlusevich, Y. A., Tyazhelkova, O. V., Emelyanova, L. A., Timofeeva, A. M., Shipovalov, A. V., Chechushkov, A. V., Zaitseva, N. S., Kudrov, G. A., Yusubalieva, G. M., Yussubaliyeva, S. M., Zhukova, O. A., Tikunov, A. Y., Baklaushev, V. P., Sedykh, S. E., Lifshits, G. I. & Tikunova, N. V., Sept 2023, In: Biochemistry (Moscow). 88, 9, p. 1205-1214 10 p.
Research output: Contribution to journal › Article › peer-review
Вирусы хорошие, вирусы плохие и… сосиски
Нетёсов, С. В., 31 Aug 2023, Наука и жизнь, 8.
Research output: Contribution to specialist publication › Featured article › Popular Science
Applicability of Diagnostic Criteria and High Prevalence of Familial Dysbetalipoproteinemia in Russia: A Pilot Study
Blokhina, A. V., Ershova, A. I., Kiseleva, A. V., Sotnikova, E. A., Zharikova, A. A., Zaicenoka, M., Vyatkin, Y. V., Ramensky, V. E., Kutsenko, V. A., Shalnova, S. A., Meshkov, A. N. & Drapkina, O. M., 24 Aug 2023, In: International Journal of Molecular Sciences. 24, 17, 13159.
Research output: Contribution to journal › Article › peer-review
Renaming of genera Ebolavirus and Marburgvirus to Orthoebolavirus and Orthomarburgvirus, respectively, and introduction of binomial species names within family Filoviridae
Biedenkopf, N., Bukreyev, A., Chandran, K., Di Paola, N., Formenty, P. B. H., Griffiths, A., Hume, A. J., Mühlberger, E., Netesov, S. V., Palacios, G., Pawęska, J. T., Smither, S., Takada, A., Wahl, V. & Kuhn, J. H., 3 Aug 2023, In: Archives of Virology. 168, 8, 6 p., 220.
Research output: Contribution to journal › Article › peer-review
Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)
ICTV Report Consortium & Нетёсов, С. В., 1 Aug 2023, In: Journal of General Virology. 104, 8, 55 p.
Research output: Contribution to journal › Article › peer-review
Alternative Mechanisms of Mutagenesis at mCpG Sites during Replication and Repair
Shilkin, E. S., Petrova, D. V., Zharkov, D. O. & Makarova, A. V., Aug 2023, In: Molecular Biology. 57, 4, p. 584-592 9 p.
Research output: Contribution to journal › Article › peer-review
Ceria–Zirconia Supported Platinum Catalysts for the Water-Gas Shift Reaction: The Influence of Support Composition
Gorlova, A. M., Pakharukova, V. P., Stonkus, O. A., Rogozhnikov, V. N., Gladky, A. Y., Snytnikov, P. V. & Potemkin, D. I., Aug 2023, In: Kinetics and Catalysis. 64, 4, p. 449-457 9 p.
Research output: Contribution to journal › Article › peer-review
Structure of an Ice-Binding Protein from Myoxocephalus octodecemspinosus Determined by Molecular Dynamics and Based on Circular Dichroism Spectra
Oleinik, G. A., Zhdanova, P., Koval, V. V., Chernonosov, A. A. & Baranova, S. V., Aug 2023, In: Biophysics (Russian Federation). 68, 4, p. 513-518 6 p., 2.
Research output: Contribution to journal › Article › peer-review
Vertical Distribution of Communities of Epiphytic Myxomycetes on Woody Introduced Plants in Siberia
Vlasenko, A. V., Tomoshevich, M. A. & Chelobanov, B. P., Aug 2023, In: Contemporary Problems of Ecology. 16, 4, p. 466-478 13 p.
Research output: Contribution to journal › Article › peer-review
Metal-oxide catalysts for CO TOX and PROX processes in the Pt–Cr/Mo/W systems
Lagunova, V., Filatov, E., Plyusnin, P., Kostin, G., Urlukov, A., Potemkin, D. & Korenev, S., 29 Jul 2023, In: International Journal of Hydrogen Energy. 48, 64, p. 25133-25143 11 p.
Research output: Contribution to journal › Article › peer-review
Inner Amino Acid Contacts Are Key Factors of Multistage Structural Rearrangements of DNA and Affect Substrate Specificity of Apurinic/Apyrimidinic Endonuclease APE1
Bulygin, A. A., Syryamina, V. N., Kuznetsova, A. A., Novopashina, D. S., Dzuba, S. A. & Kuznetsov, N. A., 14 Jul 2023, In: International Journal of Molecular Sciences. 24, 14, 11474.
Research output: Contribution to journal › Article › peer-review
Individual Contributions of Amido Acid Residues Tyr122, Ile168, and Asp173 to the Activity and Substrate Specificity of Human DNA Dioxygenase ABH2
Davletgildeeva, A. T., Tyugashev, T. E., Zhao, M., Kuznetsov, N. A., Ishchenko, A. A., Saparbaev, M. & Kuznetsova, A. A., 13 Jul 2023, In: Cells. 12, 14, 1839.
Research output: Contribution to journal › Article › peer-review
Double oxalates of Rh(III) with Ni(II) and Co(II) – Effective precursors of nanoalloys for hydrocarbons steam reforming
Zadesenets, A. V., Garkul, I. A., Filatov, E. Y., Sukhikh, A. S., Plusnin, P. E., Urlukov, A. S., Uskov, S. I., Potemkin, D. I. & Korenev, S. V., 12 Jul 2023, In: International Journal of Hydrogen Energy. 48, 59, p. 22428-22438 11 p.
Research output: Contribution to journal › Article › peer-review
Abasic site-peptide cross-links are blocking lesions repaired by AP endonucleases
Yudkina, A. V., Bulgakov, N. A., Kim, D. V., Baranova, S. V., Ishchenko, A. A., Saparbaev, M. K., Koval, V. V. & Zharkov, D. O., 7 Jul 2023, In: Nucleic Acids Research. 51, 12, p. 6321-6336 16 p., gkad423.
Research output: Contribution to journal › Article › peer-review
Cloning, Expression, and Characterization of Family A DNA Polymerase from Massilia aurea
Kuznetsova, A. A., Bedritskikh, K. S., Bulygin, A. A. & Kuznetsov, N. A., Jul 2023, In: Fermentation. 9, 7, 650.
Research output: Contribution to journal › Article › peer-review
Bypass of Abasic Site-Peptide Cross-Links by Human Repair and Translesion DNA Polymerases
Yudkina, A. V., Barmatov, A. E., Bulgakov, N. A., Boldinova, E. O., Shilkin, E. S., Makarova, A. V. & Zharkov, D. O., 29 Jun 2023, In: International Journal of Molecular Sciences. 24, 13, 10877.
Research output: Contribution to journal › Article › peer-review
Antibodies Capable of Enhancing SARS-CoV-2 Infection Can Circulate in Patients with Severe COVID-19
Matveev, A., Pyankov, O., Khlusevich, Y., Tyazhelkova, O., Emelyanova, L., Timofeeva, A., Shipovalov, A., Chechushkov, A., Zaitseva, N., Kudrov, G., Yusubalieva, G., Yussubaliyeva, S., Zhukova, O., Baklaushev, V., Sedykh, S., Lifshits, G., Tikunov, A. & Tikunova, N., 28 Jun 2023, In: International Journal of Molecular Sciences. 24, 13, 10799.
Research output: Contribution to journal › Article › peer-review
Milk Exosomes: Next-Generation Agents for Delivery of Anticancer Drugs and Therapeutic Nucleic Acids
Timofeeva, A. M., Paramonik, A. P., Sedykh, S. S. & Nevinsky, G. A., 15 Jun 2023, In: International Journal of Molecular Sciences. 24, 12, 10194.
Research output: Contribution to journal › Review article › peer-review
Genome-wide analysis of WD40 protein family and functional characterization of BvWD40-82 in sugar beet
Wu, Z., Zhang, T., Li, J., Chen, S., Grin, I. R., Zharkov, D. O., Yu, B. & Li, H., 2 Jun 2023, In: Frontiers in Plant Science. 14, 1185440.
Research output: Contribution to journal › Article › peer-review
Cytotoxic Activity of a Cold Atmospheric Plasma Jet in Relation to a 3D Cell Model of Human Breast Cancer
Patrakova, E. A., Biryukov, M. M., Troitskaya, O. S., Novak, D. D., Milakhina, E. V., Gugin, P. P., Zakrevsky, D. E., Schweigert, I. V. & Koval, O. A., Jun 2023, In: Cell and Tissue Biology. 17, 3, p. 233-246 14 p.
Research output: Contribution to journal › Article › peer-review
Monoclonal Antibody Panel for Hepatitis B Virus Genotype and HBsAg Subtype Identification: Results Obtained for Blood-Serum Samples from Three Regions of Russia
Bezuglova, L. V., Sergeeva, E. I., Voevodskaya, L. Y., Lysykh, E. E., Polovitsa, N. V., Deliy, I. V., Ivanov, M. K., Netesova, I. G. & Netesov, S. V., Jun 2023, In: Molecular Genetics, Microbiology and Virology. 38, 2, p. 95-100 6 p.
Research output: Contribution to journal › Article › peer-review
Identification, Characterization, and Genome Analysis of Two Novel Temperate Pseudomonas protegens Phages PseuP_222 and PseuP_224
Morozova, V., Kozlova, Y., Tikunov, A., Babkin, I., Ushakova, T., Bardasheva, A., Jdeed, G., Zhirakovskaya, E., Mogileva, A., Netesov, S. & Tikunova, N., 31 May 2023, In: Microorganisms. 11, 6, 1456.
Research output: Contribution to journal › Article › peer-review
The Impact of Human DNA Glycosylases on the Activity of DNA Polymerase β toward Various Base Excision Repair Intermediates
Bakman, A. S., Boichenko, S. S., Kuznetsova, A. A., Ishchenko, A. A., Saparbaev, M. & Kuznetsov, N. A., 31 May 2023, In: International Journal of Molecular Sciences. 24, 11, 9594.
Research output: Contribution to journal › Article › peer-review
Correlated Target Search by Vaccinia Virus Uracil-DNA Glycosylase, a DNA Repair Enzyme and a Processivity Factor of Viral Replication Machinery
Diatlova, E. A., Mechetin, G. V., Yudkina, A. V., Zharkov, V. D., Torgasheva, N. A., Endutkin, A. V., Shulenina, O. V., Konevega, A. L., Gileva, I. P., Shchelkunov, S. N. & Zharkov, D. O., 23 May 2023, In: International Journal of Molecular Sciences. 24, 11, 9113.
Research output: Contribution to journal › Article › peer-review
Association of Peripheral Inflammatory Biomarkers and Growth Factors Levels with Sex, Therapy and Other Clinical Factors in Schizophrenia and Patient Stratification Based on These Data
Ermakov, E. A., Melamud, M. M., Boiko, A. S., Kamaeva, D. A., Ivanova, S. A., Nevinsky, G. A. & Buneva, V. N., 22 May 2023, In: Brain Sciences. 13, 5, 836.
Research output: Contribution to journal › Article › peer-review
The Activity of Natural Polymorphic Variants of Human DNA Polymerase β Having an Amino Acid Substitution in the Transferase Domain
Kladova, O. A., Tyugashev, T. E., Mikushina, E. S., Kuznetsov, N. A., Novopashina, D. S. & Kuznetsova, A. A., 2 May 2023, In: Cells. 12, 9, 1300.
Research output: Contribution to journal › Article › peer-review
Differences in Transcriptomic Profiles of Brain and Thyroid Tumors with NTRK Gene Rearrangement
Kechin, A. A., Koryukov, M. A., Smertina, M. A., Borobova, V. S., Oscorbin, I. P., Ivanov, A. A., Bakharev, S. Y., Boyarskikh, U. A., Kushlinskii, N. E. & Filipenko, M. L., May 2023, In: Bulletin of Experimental Biology and Medicine. 175, 1, p. 78-85 8 p.
Research output: Contribution to journal › Article › peer-review
The GJB2 (Cx26) Gene Variants in Patients with Hearing Impairment in the Baikal Lake Region (Russia)
Pshennikova, V. G., Teryutin, F. M., Cherdonova, A. M., Borisova, T. V., Solovyev, A. V., Romanov, G. P., Morozov, I. V., Bondar, A. A., Posukh, O. L., Fedorova, S. A. & Barashkov, N. A., 28 Apr 2023, In: Genes. 14, 5, 1001.
Research output: Contribution to journal › Article › peer-review
The Composition of Small Extracellular Vesicles (sEVs) in the Blood Plasma of Colorectal Cancer Patients Reflects the Presence of Metabolic Syndrome and Correlates with Angiogenesis and the Effectiveness of Thermoradiation Therapy
Yunusova, N. V., Svarovsky, D. A., Konovalov, A. I., Kostromitsky, D. N., Startseva, Z. A., Cheremisina, O. V., Afanas'ev, S. G., Kondakova, I. V., Grigor'eva, A. E., Vtorushin, S. V., Sereda, E. E., Usova, A. V. & Tamkovich, S. N., 19 Apr 2023, In: Journal of Personalized Medicine. 13, 4, 684.
Research output: Contribution to journal › Article › peer-review
Powder and structured Pt/Ce_0.75Zr_0.25O₂-based catalysts: Water gas shift performance and quasi in situ XPS studies
Gorlova, A. M., Panafidin, M. A., Shilov, V. A., Pakharukova, V. P., Snytnikov, P. V. & Potemkin, D. I., 15 Apr 2023, In: International Journal of Hydrogen Energy. 48, 32, p. 12015-12023 9 p.
Research output: Contribution to journal › Article › peer-review
Comparative Analysis of Molecular Functions and Biological Role of Proteins from Cell-Free DNA-Protein Complexes Circulating in Plasma of Healthy Females and Breast Cancer Patients
Tutanov, O., Shefer, A., Tsentalovich, Y. & Tamkovich, S., 14 Apr 2023, In: International Journal of Molecular Sciences. 24, 8, 7279.
Research output: Contribution to journal › Article › peer-review
Activated Carbon-Enriched Electrospun-Produced Scaffolds for Drug Delivery/Release in Biological Systems
Nazarkina, Z. K., Stepanova, A. O., Chelobanov, B. P., Kvon, R. I., Simonov, P. A., Karpenko, A. A. & Laktionov, P. P., 4 Apr 2023, In: International Journal of Molecular Sciences. 24, 7, 6713.
Research output: Contribution to journal › Article › peer-review
Activity of nsp14 Exonuclease from SARS-CoV-2 towards RNAs with Modified 3'-Termini
Yuyukina, S. K., Barmatov, A. E., Bizyaev, S. N., Stetsenko, D. A., Sergeeva, O. V., Zatsepin, T. S. & Zharkov, D. O., Apr 2023, In: Doklady. Biochemistry and biophysics. 509, 1, p. 65-69 5 p.
Research output: Contribution to journal › Article › peer-review
Comparative Analysis of Family A DNA-Polymerases as a Searching Tool for Enzymes with New Properties
Bulygin, A. A., Kuznetsova, A. A., Fedorova, O. S. & Kuznetsov, N. A., Apr 2023, In: Molecular Biology. 57, 2, p. 182-192 11 p.
Research output: Contribution to journal › Article › peer-review
DNA Probes for Analysis of the Activity of Key Enzymes of the Base Excision DNA Repair Pathway in Human Cells
Alekseeva, I. V., Kuznetsova, A. A., Kladova, O. A., Shender, V. O., Schneider, P. V., Fedorova, O. S. & Kuznetsov, N. A., Apr 2023, In: Molecular Biology. 57, 2, p. 299-311 13 p.
Research output: Contribution to journal › Article › peer-review
Effect of Usnic Acid-Derived Tyrosyl-DNA Phosphodiesterase 1 Inhibitor Used as Monotherapy or in Combination with Olaparib on Transplanted Tumors In Vivo
Kornienko, T. E., Zakharenko, A. L., Ilina, E. S., Chepanova, A. A., Zakharova, O. D., Dyrkheeva, N. S., Popova, N. A., Nikolin, V. P., Filimonov, A. S., Luzina, O. A., Salakhutdinov, N. F. & Lavrik, O. I., Apr 2023, In: Molecular Biology. 57, 2, p. 214-224 11 p.
Research output: Contribution to journal › Article › peer-review
Factors Affecting the Stability of the Trimer of 2'-Deoxyuridine 5'-Triphosphate Nucleotide Hydrolase from Escherichia coli
Yudkina, A. V., Kovalenko, E. A., Endutkin, A. V., Panferova, E. P., Kirilenko, A. A., Kokhanenko, A. A. & Zharkov, D. O., Apr 2023, In: Molecular Biology. 57, 2, p. 312-319 8 p.
Research output: Contribution to journal › Article › peer-review
Influence of the Poly(ADP-Ribose) Polymerase 1 Level on the Status of Base Excision Repair in Human Cells
Ilina, E. S., Kochetkova, A. S., Belousova, E. A., Kutuzov, M. M., Lavrik, O. I. & Khodyreva, S. N., Apr 2023, In: Molecular Biology. 57, 2, p. 272-283 12 p.
Research output: Contribution to journal › Article › peer-review
Mechanisms of the Specificity of the CRISPR/Cas9 System in Genome Editing
Kulishova, L. M., Vokhtantsev, I. P., Kim, D. V. & Zharkov, D. O., Apr 2023, In: Molecular Biology. 57, 2, p. 258-271 14 p.
Research output: Contribution to journal › Article › peer-review
Poly(ADP-Ribose) Polymerases 1 and 2: Classical Functions and Interaction with New Histone Poly(ADP-Ribosyl)ation Factor HPF1
Kurgina, T. A. & Lavrik, O. I., Apr 2023, In: Molecular Biology. 57, 2, p. 245-257 13 p.
Research output: Contribution to journal › Article › peer-review
Regeneration of Rh/Ce0.75Zr0.25O2 – δ/θ-Al2O3/FeCrAl Catalyst after Autothermal Reforming of Diesel Fuel
Shilov, V. A., Rogozhnikov, V. N., Potemkin, D. I. & Snytnikov, P. V., Apr 2023, In: Kinetics and Catalysis. 64, 2, p. 215-220 6 p.
Research output: Contribution to journal › Article › peer-review
Human Polβ Natural Polymorphic Variants G118V and R149I Affects Substate Binding and Catalysis
Kladova, O. A., Tyugashev, T. E., Mikushina, E. S., Soloviev, N. O., Kuznetsov, N. A., Novopashina, D. S. & Kuznetsova, A. A., 20 Mar 2023, In: International Journal of Molecular Sciences. 24, 6, 5892.
Research output: Contribution to journal › Article › peer-review
Design of the New Closo-Dodecarborate-Containing Gemcitabine Analogue for the Albumin-Based Theranostics Composition
Raskolupova, V. I., Wang, M., Dymova, M. A., Petrov, G. O., Shchudlo, I. M., Taskaev, S. Y., Abramova, T. V., Godovikova, T. S., Silnikov, V. N. & Popova, T. V., 15 Mar 2023, In: Molecules (Basel, Switzerland). 28, 6, 2672.
Research output: Contribution to journal › Article › peer-review

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