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  1. 2025

  2. The hidden elephant: Modified abasic sites and their consequences

    Yudkina, A. V. & Zharkov, D. O., Apr 2025, In: DNA Repair. 148, p. 103823 03823.

    Research output: Contribution to journal › Review article › peer-review

  3. Levels of Proangiogenic Molecules and Terminal Complement Complex C5b-9 in the Crown of Circulating sEVs in Patients with Recurrent Glioblastomas: Relationship with Tumor Molecular Characteristics

    Yunusova, N., Tulendinov, E., Svarovsky, D., Ryabova, A., Kondakova, I., Ponomaryova, A., Vtorushin, S., Tabakaev, S., Korshunov, D., Shtam, T., Tamkovich, S. & Choynzonov, E., 18 Feb 2025, In: Current issues in molecular biology. 47, 2, 132.

    Research output: Contribution to journal › Article › peer-review

  4. The effect of methylation and hydroxymethylation of cytosine on activity and fidelity of Pol λ and Pol β

    Shilkin, E. S., Petrova, D. V., Kruchinin, A. A., Zharkov, D. O. & Makarova, A. V., Apr 2025, In: DNA Repair. 148, p. 103815 103815.

    Research output: Contribution to journal › Article › peer-review

  5. Preparation of Boron-Containing S-Nitrosothiol Based on Homocysteinylamides of Human Serum Albumin for Combined NO-Chemical and Boron-Neutron-Capture Therapy

    Popova, T. V., Van, M., Kurochkin, T. N., Tsyrempilov, S. A., Zakharova, O. D., Silnikov, V. N. & Godovikova, T. S., 12 Feb 2025, In: Russian Journal of Bioorganic Chemistry. 51, 1, p. 202-215 14 p.

    Research output: Contribution to journal › Article › peer-review

  6. Рекомбинантный штамм бактерий Escherichia coli – продуцент химерного белка формамидопиримидин-ДНК-гликозилазы с флуоресцентным репортерным белком

    Булгаков, Н. А., Дворникова, А. П., Петрова, Д. В. & Жарков, Д. О., 3 Feb 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2834027, 12 Dec 2023, Priority date 12 Dec 2023, Priority No. 2023132878

    Research output: Patent › Patent for invention

  7. Synthesis and exploration of anticancer potential of spirocyclic 1,2,3-triazoline and aziridine derivatives of natural eudesmanolide isoalantolactone

    Patrushev, S. S., Kichkina, D. O., Moralev, A. D., Rybalova, T. V., Krasnov, V. I., Chernyak, E. I., Zenkova, M. A., Markov, A. V. & Shults, E. E., Feb 2025, In: Bioorganic Chemistry. 155, 108124.

    Research output: Contribution to journal › Article › peer-review

  8. Ad6-Based GM-CSF Expressing Vector Displays Oncolytic and Immunostimulatory Effects in an Immunocompetent Syrian Hamster Model of Cholangiocarcinoma

    Zabelina, D. S., Osipov, I. D., Maslov, D. E., Kovner, A. V., Vasikhovskaia, V. A., Demina, D. S., Romanov, S. E., Shishkina, E. V., Davydova, J., Netesov, S. V. & Romanenko, M. V., 24 Jan 2025, In: Viruses. 17, 2, 162.

    Research output: Contribution to journal › Article › peer-review

  9. Polyamine Adducts with AP Sites: Interaction with DNA Polymerases and AP Endonucleases

    Yudkina, A. V., Amanova, M. M. & Zharkov, D. O., 20 Jan 2025, In: Chemical Research in Toxicology. 38, 1, p. 102-114 13 p.

    Research output: Contribution to journal › Article › peer-review

  10. Bypass of Methoxyamine-Adducted Abasic Sites by Eukaryotic Translesion DNA Polymerases

    Yudkina, A. V., Novikova, A. A., Stolyarenko, A. D., Makarova, A. V. & Zharkov, D. O., 14 Jan 2025, In: International Journal of Molecular Sciences. 26, 2, 642.

    Research output: Contribution to journal › Article › peer-review

  11. Thermodynamic parameters obtained for the formation of the Cas12a-RNA/DNA complex

    Baranova, S. V., Zhdanova, P. V., Golyshev, V. M., Lomzov, A. A., Pestryakov, P. E., Chernonosov, A. A. & Koval, V. V., Jan 2025, In: Biochemical and Biophysical Research Communications. 743, p. 151176 151176.

    Research output: Contribution to journal › Article › peer-review

  12. Enterobacter soli Strain AF-22b-4245: Study of the Genome and the Effect on Wheat Growth

    Sokolova, E. A., Mishukova, O. V., Khlistun, I. V., Tromenschleger, I. N., Chumanova, E. V. & Voronina, E. N., 2025, In: Microbiology Research. 16, 2, 34.

    Research output: Contribution to journal › Article › peer-review

  13. Homologous recombination deficiency (HRD) diagnostics: underlying mechanisms and new perspectives

    Kechin, A., Koryukov, M., Mikheeva, R. & Filipenko, M., 2025, In: Cancer and Metastasis Reviews. 44, 1

    Research output: Contribution to journal › Article › peer-review

  14. Molecular phylogenetic analysis and taxonomy of the Palearctic Pamphagidae grasshoppers (Orthoptera, Acridoidea) based on DNA markers

    Sukhikh, I., Bugrov, A., Chobanov, D., Fet, V., Biryukov, M. & Blinov, A., 2025, In: Insect Systematics and Evolution.

    Research output: Contribution to journal › Article › peer-review

  15. 2024

  16. Clinical and biochemical features of atherogenic hyperlipidemias with different genetic basis: A comprehensive comparative study

    Blokhina, A. V., Ershova, A. I., Kiseleva, A. V., Sotnikova, E. A., Zharikova, A. A., Zaicenoka, M., Vyatkin, Y. V., Ramensky, V. E., Kutsenko, V. A., Litinskaya, O. A., Pokrovskaya, M. S., Shalnova, S. A., Meshkov, A. N. & Drapkina, O. M., 20 Dec 2024, In: PLoS ONE. 19, 12, e0315693.

    Research output: Contribution to journal › Article › peer-review

  17. Genome-Wide Analysis of Ca2+-ATPases and their Salt Stress Responses in Sugar Beet

    Liu, S., Chen, S., Grin, I. R., DuanMu, H. & Li, H., 13 Dec 2024, In: Sugar Tech. 27, p. 488-505 18 p.

    Research output: Contribution to journal › Article › peer-review

  18. The effect of calcination gas atmosphere on the structural organization of Ru/Ce0.75Zr0.25O2 catalysts for CO2 methanation

    Pakharukova, V. P., Kharchenko, N. A., Stonkus, O. A., Saraev, A. A., Gorlova, A. M., Rogozhnikov, V. N. & Potemkin, D. I., 5 Dec 2024, In: Colloids and Surfaces A: Physicochemical and Engineering Aspects. 702, Pt. 1, 11 p., 134962.

    Research output: Contribution to journal › Article › peer-review

  19. Accumulation of Anthocyanin in the Aleurone of Barley Grains by Targeted Restoration of the MYC2 Gene

    Egorova, A. A., Zykova, T. E., Hertig, C. W., Hoffie, I., Morozov, S. V., Chernyak, E. I., Rogachev, A. D., Korotkova, A. M., Vikhorev, A. V., Vasiliev, G. V., Shoeva, O. Y., Kumlehn, J., Gerasimova, S. V. & Khlestkina, E. K., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12705.

    Research output: Contribution to journal › Article › peer-review

  20. A software module to assess the metabolic potential of mutant strains of the bacterium Corynebacterium glutamicum

    Kazantsev, F. V., Trofimova, M. F., Khlebodarova, T. M., Matushkin, Y. G. & Lashin, S. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 897-903 7 p.

    Research output: Contribution to journal › Article › peer-review

  21. High prevalence of m.1555A > G in patients with hearing loss in the Baikal Lake region of Russia as a result of founder effect

    Borisova, T. V., Cherdonova, A. M., Pshennikova, V. G., Teryutin, F. M., Morozov, I. V., Bondar, A. A., Baturina, O. A., Kabilov, M. R., Romanov, G. P., Solovyev, A. V., Fedorova, S. A. & Barashkov, N. A., Dec 2024, In: Scientific Reports. 14, 1, 10 p., 15342.

    Research output: Contribution to journal › Article › peer-review

  22. Shedding New Light on the Hull-Pericarp Adhesion Mechanisms of Barley Grains by Transcriptomics Analysis of Isogenic NUD1 and nud1 Lines

    Gerasimova, S. V., Korotkova, A. M., Rodrigues, T. D. S., Vikhorev, A., Kolosovskaya, E. V., Vasiliev, G. V., Melzer, M., Hertig, C. W., Kumlehn, J. & Khlestkina, E. K., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 13108.

    Research output: Contribution to journal › Article › peer-review

  23. Spectrum and Prevalence of Rare APOE Variants and Their Association with Familial Dysbetalipoproteinemia

    Blokhina, A. V., Ershova, A. I., Kiseleva, A. V., Sotnikova, E. A., Zharikova, A. A., Zaicenoka, M., Vyatkin, Y. V., Ramensky, V. E., Kutsenko, V. A., Garbuzova, E. V., Divashuk, M. G., Litinskaya, O. A., Pokrovskaya, M. S., Shalnova, S. A., Meshkov, A. N. & Drapkina, O. M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12651.

    Research output: Contribution to journal › Article › peer-review

  24. Photocleavable Guide crRNAs for a Light-Controllable CRISPR/Cas9 System

    Sakovina, L., Vokhtantsev, I., Akhmetova, E., Vorobyeva, M., Vorobjev, P., Zharkov, D. O. & Novopashina, D., 19 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12392.

    Research output: Contribution to journal › Article › peer-review

  25. Kinetic Features of Degradation of R-Loops by RNase H1 from Escherichia coli

    Kuznetsova, A. A., Kosarev, I. A., Timofeyeva, N. A., Novopashina, D. S. & Kuznetsov, N. A., 15 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12263.

    Research output: Contribution to journal › Article › peer-review

  26. The Trajectory of Damaged-Base Eversion into the Active Site of Apurinic/Apyrimidinic Endonuclease APE1 Regulates This Enzyme’s Substrate Specificity

    Bulygin, A. A. & Kuznetsov, N. A., 15 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12287.

    Research output: Contribution to journal › Article › peer-review

  27. Role of R-Loop Structure in Efficacy of RNA Elongation Synthesis by RNA Polymerase from Escherichia coli

    Timofeyeva, N. A., Tsoi, E. I., Novopashina, D. S., Kuznetsova, A. A. & Kuznetsov, N. A., 14 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12190.

    Research output: Contribution to journal › Article › peer-review

  28. Investigation of Antibiotic Resistance of E. coli Associated with Farm Animal Feces with Participation of Citizen Scientists

    Timofeeva, A. M., Galyamova, M. R., Krivosheev, D. M., Karabanov, S. Y. & Sedykh, S. E., 13 Nov 2024, In: Microorganisms. 12, 11, 2308.

    Research output: Contribution to journal › Article › peer-review

  29. Apurinic/apyrimidinic endonuclease 1 has major impact in prevention of suicidal covalent DNA–protein crosslink with apurinic/apyrimidinic site in cellular extracts

    Lebedeva, N. A., Dyrkheeva, N. S., Rechkunova, N. I. & Lavrik, O. I., Nov 2024, In: IUBMB Life. 76, 11, p. 987-996 10 p.

    Research output: Contribution to journal › Article › peer-review

  30. The dual role of methylglyoxal in plant stress response and regulation of DJ-1 protein

    Sun, Y., Chen, S., Grin, I. R., Zharkov, D. O., Yu, B. & Li, H., Nov 2024, In: Physiologia Plantarum. 176, 6, 15 p., e14608.

    Research output: Contribution to journal › Review article › peer-review

  31. Сравнительный анализ первичной структуры и получение рекомбинантной поли(ADP-рибоза)полимеразы 1 долгоживущего Heterocephalus glaber

    Naumenko, K. N., Nurislamov, A. R., Nazarov, K. D., Fishman, V. S., Popov, A. A., Petruseva, I. O., Evdokimov, A. N. & Lavrik, O. I., Nov 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 7, p. 688-695 8 p., 2.

    Research output: Contribution to journal › Article › peer-review

  32. An Approach to the Synthesis of Cyclic Photocleavable RNA for Photoactivatable CRISPR/Cas9 System

    Ivanskaya, E. V., Meschaninova, M. I., Vorobyeva, M. A., Zharkov, D. O. & Novopashina, D. S., Oct 2024, In: Russian Journal of Bioorganic Chemistry. 50, 5, p. 1807-1821 15 p.

    Research output: Contribution to journal › Article › peer-review

  33. Blood Growth Factor Levels in Patients with Systemic Lupus Erythematosus: High Neuregulin-1 Is Associated with Comorbid Cardiovascular Pathology

    Ermakov, E. A., Melamud, M. M., Boiko, A. S., Ivanova, S. A., Sizikov, A. E., Nevinsky, G. A. & Buneva, V. N., Oct 2024, In: Life. 14, 10, 1305.

    Research output: Contribution to journal › Article › peer-review

  34. Circulating miRNAs in the Plasma of Post-COVID-19 Patients with Typical Recovery and Those with Long-COVID Symptoms: Regulation of Immune Response-Associated Pathways

    Timofeeva, A. M., Nikitin, A. O. & Nevinsky, G. A., Oct 2024, In: Non-Coding RNA. 10, 5, 48.

    Research output: Contribution to journal › Article › peer-review

  35. Cleavage of DNA Substrate Containing Nucleotide Mismatch in the Complementary Region to sgRNA by Cas9 Endonuclease: Thermodynamic and Structural Features

    Baranova, S. V., Zhdanova, P. V., Koveshnikova, A. D., Pestryakov, P. E., Vokhtantsev, I. P., Chernonosov, A. A. & Koval, V. V., Oct 2024, In: International Journal of Molecular Sciences. 25, 19, 10862.

    Research output: Contribution to journal › Article › peer-review

  36. Enhanced thermal stability enables human mismatch-specific thymine-DNA glycosylase to catalyse futile DNA repair

    Manapkyzy, D., Joldybayeva, B., Ishchenko, A. A., Matkarimov, B. T., Zharkov, D. O., Taipakova, S. & Saparbaev, M. K., Oct 2024, In: PLoS ONE. 19, 10, 32 p., e0304818.

    Research output: Contribution to journal › Article › peer-review

  37. Error-Prone DNA Synthesis on Click-Ligated Templates

    Endutkin, A. V., Yakovlev, A. O., Zharkov, T. D., Golyshev, V. M., Yudkina, A. V. & Zharkov, D. O., Oct 2024, In: Doklady Biochemistry and Biophysics. 518, 1, p. 376-381 6 p., 11.

    Research output: Contribution to journal › Article › peer-review

  38. Double oxalates of Rh(III) with Cu(II) and Zn(II) – Effective precursors of nanoalloys for hydrogen production by steam reforming of propane

    Garkul, I. A., Zadesenets, A. V., Filatov, E. Y., Байдина, И. А., Plusnin, P. E., Urlukov, A. S., Potemkin, D. I. & Korenev, S. V., 11 Sept 2024, In: International Journal of Hydrogen Energy. 82, p. 611-623 13 p.

    Research output: Contribution to journal › Article › peer-review

  39. Bioremediation of Polycyclic Aromatic Hydrocarbons by Means of Bacteria and Bacterial Enzymes

    Davletgildeeva, A. T. & Kuznetsov, N. A., Sept 2024, In: Microorganisms. 12, 9, 1814.

    Research output: Contribution to journal › Article › peer-review

  40. Dealkylation of Macromolecules by Eukaryotic α-Ketoglutarate-Dependent Dioxygenases from the AlkB-like Family

    Davletgildeeva, A. T. & Kuznetsov, N. A., Sept 2024, In: Current issues in molecular biology. 46, 9, p. 10462-10491 30 p.

    Research output: Contribution to journal › Review article › peer-review

  41. How Do Plant Growth-Promoting Bacteria Use Plant Hormones to Regulate Stress Reactions?

    Timofeeva, A. M., Galyamova, M. R. & Sedykh, S. E., Sept 2024, In: Plants. 13, 17, 24 p., 2371.

    Research output: Contribution to journal › Review article › peer-review

  42. Methylation and hydroxymethylation of cytosine alter activity and fidelity of translesion DNA polymerases

    Shilkin, E. S., Petrova, D. V., Novikova, A. A., Boldinova, E. O., Zharkov, D. O. & Makarova, A. V., Sept 2024, In: DNA Repair. 141, 12 p., 103712.

    Research output: Contribution to journal › Article › peer-review

  43. The Role of DNMT Methyltransferases and TET Dioxygenases in the Maintenance of the DNA Methylation Level

    Davletgildeeva, A. T. & Kuznetsov, N. A., Sept 2024, In: Biomolecules. 14, 9, 1117.

    Research output: Contribution to journal › Article › peer-review

  44. Three new species of bright-spored myxomycetes from Asia and the second world record of Perichaena maculosa

    Vlasenko, A. V., Enkhtuya, O., Degidmaa, T., Enkhjargal, E., Chelobanov, B. P. & Vlasenko, V. A., 27 Aug 2024, In: Phytotaxa. 663, 4, p. 205-220 16 p.

    Research output: Contribution to journal › Article › peer-review

  45. An Insight into the Mechanism of DNA Cleavage by DNA Endonuclease from the Hyperthermophilic Archaeon Pyrococcus furiosus

    Davletgildeeva, A. T., Kuznetsova, A. A., Ishchenko, A. A., Saparbaev, M. & Kuznetsov, N. A., Aug 2024, In: International Journal of Molecular Sciences. 25, 16, 8897.

    Research output: Contribution to journal › Article › peer-review

  46. Computational Modeling Study of the Molecular Basis of dNTP Selectivity in Human Terminal Deoxynucleotidyltransferase

    Ukladov, E. O., Tyugashev, T. E. & Kuznetsov, N. A., Aug 2024, In: Biomolecules. 14, 8, 961.

    Research output: Contribution to journal › Article › peer-review

  47. Photocleavable Guide RNA for Photocontrolled CRISPR/Cas9 System

    Akhmetova, E. A., Vokhtantsev, I. P., Meschaninova, M. I., Vorobyeva, M. A., Zharkov, D. O. & Novopashina, D. S., Aug 2024, In: Russian Journal of Bioorganic Chemistry. 50, 4, p. 1314-1324 11 p., 12.

    Research output: Contribution to journal › Article › peer-review

  48. DEVELOPMENT OF DIESEL FUEL PROCESSOR AND OPTIMISATION OF THE THERMAL CIRCUIT OF A POWER PLANT BASED ON SOFC WITH A POWER OF 1 KW

    SHILOV V, A., POTEMKIN D, I., BURMATOVA M, A. & SNYTNIKOV P, V., 29 Jul 2024, In: Chemistry for Sustainable Development. 32, 3, p. 323-329 7 p.

    Research output: Contribution to journal › Article › peer-review

  49. Does the XPA–FEN1 Interaction Concern to Nucleotide Excision Repair or Beyond?

    Krasikova, Y. S., Maltseva, E. A., Khodyreva, S. N., Evdokimov, A. N., Rechkunova, N. I. & Lavrik, O. I., Jul 2024, In: Biomolecules. 14, 7, 814.

    Research output: Contribution to journal › Article › peer-review

  50. Ex Situ and in Situ Studies of the Structural Features of Ruthenium-Containing Ru/Ce0.75Zr0.25O2 Catalysts of CO2 Methanation

    Kharchenko, N. A., Pakharukova, V. P., Stonkus, O. A., Rogozhnikov, V. N., Gorlova, A. M., Saraev, A. A., Gladky, A. Y. & Potemkin, D. I., Jul 2024, In: Journal of Structural Chemistry. 65, 7, p. 1277-1291 15 p.

    Research output: Contribution to journal › Article › peer-review

  51. Use of qPCR to Evaluate Efficiency of the Bulky DNA Damage Removal in Extracts of Mammalian Cells with Different Maximum Lifespan

    Popov, A. A., Shamanin, V. A., Petruseva, I. O., Evdokimov, A. N. & Lavrik, O. I., Jul 2024, In: Biochemistry (Moscow). 89, 7, p. 1183-1191 9 p., 2.

    Research output: Contribution to journal › Article › peer-review

  52. Repair and DNA Polymerase Bypass of Clickable Pyrimidine Nucleotides

    Endutkin, A. V., Yudkina, A. V., Zharkov, T. D., Barmatov, A. E., Petrova, D. V., Kim, D. V. & Zharkov, D. O., 12 Jun 2024, In: Biomolecules. 14, 6, 681.

    Research output: Contribution to journal › Article › peer-review

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