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  1. 2025

  2. Off-target interactions in the CRISPR-Cas9 Machinery: mechanisms and outcomes

    Kanazhevskaya, L. Y., Zhdanova, P. V., Chernonosov, A. A. & Koval, V. V., Sept 2025, In: Biochemistry and Biophysics Reports. 43, 102134.

    Research output: Contribution to journal › Article › peer-review

  3. Key thermodynamic characteristics of Cas9 and Cas12a endonucleases’ cleavage of a DNA substrate containing a nucleotide mismatch in the region complementary to RNA

    Baranova, S. V., Zhdanova, P. V., Pestryakov, P. E., Chernonosov, A. A. & Koval, V. V., 1 Jul 2025, In: Biochemical and Biophysical Research Communications. 768, p. 151892 151892.

    Research output: Contribution to journal › Article › peer-review

  4. Analysis of the Macrokinetics of CO2 Sorption on 10%NaNO3/MgO Sorbent and Modeling of an Adsorber with a Hydrogen Capacity of 10 kg/h

    Shigarov, A. B., Nikulina, I. E., Pakharukova, V. P. & Potemkin, D. I., 24 Jun 2025, In: Catalysis in Industry. 17, 2, p. 92-102 11 p.

    Research output: Contribution to journal › Article › peer-review

  5. Случаи развития повторной перипротезной инфекции Staphylococcus aureus: реинфекция или реактивация патогена?

    Kechin, A. A., Borobova, V. S., Sheraliev, T. U., Chretien, S. O., Tromenshleger, I. N., Pavlov, V. V. & Filipenko, M. L., 11 Jun 2025, In: Travmatologiya i Ortopediya Rossii. 31, 2, p. 18-32 15 p.

    Research output: Contribution to journal › Article › peer-review

  6. Cell-penetrating peptide-conjugated, splice-switching oligonucleotides mitigate the phenotype in BTK/Tec double deficient X-linked agammaglobulinemia model

    Bestas, B., Estupiñán, H. Y., Wang, Q., Kharazi, S., He, C., K. Mohammad, D., Gupta, D., Wiklander, O. P. B., Lehto, T., Lundin, K. E., Berglöf, A., Karlsson, M. C. I., Abendroth, F., El Andaloussi, S., Gait, M. J., Wood, M. J. A., Leumann, C. J., Stetsenko, D. A., Månsson, R., Wengel, J., & 2 othersZain, R. & Smith, C. I. E., 8 May 2025, In: RSC Chemical Biology. 6, 5, p. 761-771 11 p.

    Research output: Contribution to journal › Article › peer-review

  7. Combining chromosome conformation capture and exome sequencing for simultaneous detection of structural and single-nucleotide variants

    Gridina, M., Lagunov, T., Belokopytova, P., Torgunakov, N., Nuriddinov, M., Nurislamov, A., Nazarenko, L. P., Kashevarova, A. A., Lopatkina, M. E., Vasilyev, S., Zuev, A., Belyaeva, E. O., Salyukova, O. A., Cheremnykh, A. D., Sukhanova, N. N., Minzhenkova, M. E., Markova, Z. G., Demina, N. A., Stepanchuk, Y., Khabarova, A., & 22 othersYan, A., Valeev, E., Koksharova, G., Grigor’eva, E. V., Kokh, N., Lukjanova, T., Maximova, Y., Musatova, E., Shabanova, E., Kechin, A., Khrapov, E., Boyarskih, U., Ryzhkova, O., Suntsova, M., Matrosova, A., Karoli, M., Manakhov, A., Filipenko, M., Rogaev, E., Shilova, N. V., Lebedev, I. N. & Fishman, V., 7 May 2025, In: Genome Medicine. 17, 1, p. 47 47.

    Research output: Contribution to journal › Article › peer-review

  8. From Cell Lines to Patients: Dissecting the Proteomic Landscape of Exosomes in Breast Cancer

    Shefer, A., Yanshole, L., Proskura, K., Tutanov, O., Yunusova, N., Grigor’eva, A., Tsentalovich, Y. & Tamkovich, S., 8 Apr 2025, In: Diagnostics. 15, 8, 1028.

    Research output: Contribution to journal › Article › peer-review

  9. Platinum Polyoxoniobate: Stability, Cytotoxicity, and Cellular Uptake

    Yudkina, A. V., Vokhtantsev, I. P., Rychkov, D. A., Volchek, V. V., Abramov, P. A., Sokolov, M. N. & Zharkov, D. O., 6 Apr 2025, In: Russian Journal of Bioorganic Chemistry. 51, 2, p. 693-701 9 p.

    Research output: Contribution to journal › Article › peer-review

  10. Synthesis and Properties of Phosphoryl Guanidine Oligonucleotides Containing 2′,4′-Locked Nucleotides

    Dyudeeva, E. S., Lyapin, P. K. & Dmitrienko, E. V., 6 Apr 2025, In: Russian Journal of Bioorganic Chemistry. 51, 2, p. 850-859 10 p.

    Research output: Contribution to journal › Article › peer-review

  11. The effect of methylation and hydroxymethylation of cytosine on activity and fidelity of Pol λ and Pol β

    Shilkin, E. S., Petrova, D. V., Kruchinin, A. A., Zharkov, D. O. & Makarova, A. V., Apr 2025, In: DNA Repair. 148, 103815.

    Research output: Contribution to journal › Article › peer-review

  12. The hidden elephant: Modified abasic sites and their consequences

    Yudkina, A. V. & Zharkov, D. O., Apr 2025, In: DNA Repair. 148, p. 103823 03823.

    Research output: Contribution to journal › Review article › peer-review

  13. Cell Death of Tumor Melanocytes and Treatment Options

    Koval, O., Zhilnikova, M., Balantaeva, M., Biryukov, M. & Atamanov, V., 31 Mar 2025, In: Biocell. 49, 3, p. 355-379 25 p.

    Research output: Contribution to journal › Article › peer-review

  14. Developing plant-derived DNA repair enzyme resources through studying the involvement of base excision repair DNA glycosylases in stress responses of plants

    Zhao, Y., Chen, D., Grin, I. R., Zharkov, D. O. & Yu, B., 20 Mar 2025, In: Physiologia Plantarum. 177, 2, e70162.

    Research output: Contribution to journal › Review article › peer-review

  15. Levels of Proangiogenic Molecules and Terminal Complement Complex C5b-9 in the Crown of Circulating sEVs in Patients with Recurrent Glioblastomas: Relationship with Tumor Molecular Characteristics

    Yunusova, N., Tulendinov, E., Svarovsky, D., Ryabova, A., Kondakova, I., Ponomaryova, A., Vtorushin, S., Tabakaev, S., Korshunov, D., Shtam, T., Tamkovich, S. & Choynzonov, E., 18 Feb 2025, In: Current issues in molecular biology. 47, 2, 132.

    Research output: Contribution to journal › Article › peer-review

  16. Preparation of Boron-Containing S-Nitrosothiol Based on Homocysteinylamides of Human Serum Albumin for Combined NO-Chemical and Boron-Neutron-Capture Therapy

    Popova, T. V., Van, M., Kurochkin, T. N., Tsyrempilov, S. A., Zakharova, O. D., Silnikov, V. N. & Godovikova, T. S., 12 Feb 2025, In: Russian Journal of Bioorganic Chemistry. 51, 1, p. 202-215 14 p.

    Research output: Contribution to journal › Article › peer-review

  17. Рекомбинантный штамм бактерий Escherichia coli – продуцент химерного белка формамидопиримидин-ДНК-гликозилазы с флуоресцентным репортерным белком

    Булгаков, Н. А., Дворникова, А. П., Петрова, Д. В. & Жарков, Д. О., 3 Feb 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2834027, 12 Dec 2023, Priority date 12 Dec 2023, Priority No. 2023132878

    Research output: Patent › Patent for invention

  18. Synthesis and exploration of anticancer potential of spirocyclic 1,2,3-triazoline and aziridine derivatives of natural eudesmanolide isoalantolactone

    Patrushev, S. S., Kichkina, D. O., Moralev, A. D., Rybalova, T. V., Krasnov, V. I., Chernyak, E. I., Zenkova, M. A., Markov, A. V. & Shults, E. E., Feb 2025, In: Bioorganic Chemistry. 155, 24 p., 108124.

    Research output: Contribution to journal › Article › peer-review

  19. Cold Atmospheric Plasma Jet and Conjugates of Gold Nanoparticles with Tyrp1 Antibodies Efficiently Suppress Growth of B16 Tumor

    Biryukov, M., Schweigert, I., Polyakova, A., Krychkova, N., Varlamov, M., Gorbunova, E., Epanchintseva, A., Pyshnaya, I., Zakrevsky, D., Milakhina, E., Wang, R. & Koval, O., 31 Jan 2025, In: Plasma Medicine. 15, 1, p. 1-16 16 p.

    Research output: Contribution to journal › Article › peer-review

  20. Ad6-Based GM-CSF Expressing Vector Displays Oncolytic and Immunostimulatory Effects in an Immunocompetent Syrian Hamster Model of Cholangiocarcinoma

    Zabelina, D. S., Osipov, I. D., Maslov, D. E., Kovner, A. V., Vasikhovskaia, V. A., Demina, D. S., Romanov, S. E., Shishkina, E. V., Davydova, J., Netesov, S. V. & Romanenko, M. V., 24 Jan 2025, In: Viruses. 17, 2, 162.

    Research output: Contribution to journal › Article › peer-review

  21. Polyamine Adducts with AP Sites: Interaction with DNA Polymerases and AP Endonucleases

    Yudkina, A. V., Amanova, M. M. & Zharkov, D. O., 20 Jan 2025, In: Chemical Research in Toxicology. 38, 1, p. 102-114 13 p.

    Research output: Contribution to journal › Article › peer-review

  22. Bypass of Methoxyamine-Adducted Abasic Sites by Eukaryotic Translesion DNA Polymerases

    Yudkina, A. V., Novikova, A. A., Stolyarenko, A. D., Makarova, A. V. & Zharkov, D. O., 14 Jan 2025, In: International Journal of Molecular Sciences. 26, 2, 642.

    Research output: Contribution to journal › Article › peer-review

  23. Thermodynamic parameters obtained for the formation of the Cas12a-RNA/DNA complex

    Baranova, S. V., Zhdanova, P. V., Golyshev, V. M., Lomzov, A. A., Pestryakov, P. E., Chernonosov, A. A. & Koval, V. V., Jan 2025, In: Biochemical and Biophysical Research Communications. 743, p. 151176 151176.

    Research output: Contribution to journal › Article › peer-review

  24. Enterobacter soli Strain AF-22b-4245: Study of the Genome and the Effect on Wheat Growth

    Sokolova, E. A., Mishukova, O. V., Khlistun, I. V., Tromenschleger, I. N., Chumanova, E. V. & Voronina, E. N., 2025, In: Microbiology Research. 16, 2, 34.

    Research output: Contribution to journal › Article › peer-review

  25. Homologous recombination deficiency (HRD) diagnostics: underlying mechanisms and new perspectives

    Kechin, A., Koryukov, M., Mikheeva, R. & Filipenko, M., 2025, In: Cancer and Metastasis Reviews. 44, 1

    Research output: Contribution to journal › Review article › peer-review

  26. Isoxazole-linked 7-hydroxycoumarin–2,6-dimethylheptane conjugates as inhibitors of TDP1 enzyme

    Tsypyshev, D. O., Zakharenko, A. L., Podurina, M. V., Khomenko, T. M., Kondrashov, E. V., Lavrik, O. I., Volcho, K. P. & Salakhutdinov, N. F., 2025, In: Mendeleev Communications. 35, 4, p. 444-446 3 p.

    Research output: Contribution to journal › Article › peer-review

  27. Гетерогенность содержания глюкокортикоидного рецептора в глиомах высокой степени злокачественности

    Kazanskaya, G. M., Volkov, A. M., Kiselev, R. S., Kostromskaya, D. V., Aladev, S. D., Kliver, E. E., Aidagulova, S. V., Grigorieva, E. V. & Strokotova, A. V., 2025, In: Clinical and Experimental Morphology. 14, 3, p. 49-57 9 p.

    Research output: Contribution to journal › Article › peer-review

  28. Определяющая роль гетерохроматина в фенотипическом проявлении инверсии In(1)sc8, разрывающей achaete-scute комплекс Drosophila melanogaster: The key role of heterochromatin in the phenotypic manifestation of the In(1)sc8 inversion disrupting the achaete-scute complex in Drosophila melanogaster

    Kolesnikova, T. D., Balantaeva, M. N., Pokholkova, G. V., Antonenko, O. V. & Zhimulev, I. F., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 3, p. 414-422 9 p.

    Research output: Contribution to journal › Article › peer-review

  29. 2024

  30. Clinical and biochemical features of atherogenic hyperlipidemias with different genetic basis: A comprehensive comparative study

    Blokhina, A. V., Ershova, A. I., Kiseleva, A. V., Sotnikova, E. A., Zharikova, A. A., Zaicenoka, M., Vyatkin, Y. V., Ramensky, V. E., Kutsenko, V. A., Litinskaya, O. A., Pokrovskaya, M. S., Shalnova, S. A., Meshkov, A. N. & Drapkina, O. M., 20 Dec 2024, In: PLoS ONE. 19, 12, p. e0315693 e0315693.

    Research output: Contribution to journal › Article › peer-review

  31. Genome-Wide Analysis of Ca2+-ATPases and their Salt Stress Responses in Sugar Beet

    Liu, S., Chen, S., Grin, I. R., DuanMu, H. & Li, H., 13 Dec 2024, In: Sugar Tech. 27, p. 488-505 18 p.

    Research output: Contribution to journal › Article › peer-review

  32. The effect of calcination gas atmosphere on the structural organization of Ru/Ce0.75Zr0.25O2 catalysts for CO2 methanation

    Pakharukova, V. P., Kharchenko, N. A., Stonkus, O. A., Saraev, A. A., Gorlova, A. M., Rogozhnikov, V. N. & Potemkin, D. I., 5 Dec 2024, In: Colloids and Surfaces A: Physicochemical and Engineering Aspects. 702, Pt. 1, 11 p., 134962.

    Research output: Contribution to journal › Article › peer-review

  33. Accumulation of Anthocyanin in the Aleurone of Barley Grains by Targeted Restoration of the MYC2 Gene

    Egorova, A. A., Zykova, T. E., Hertig, C. W., Hoffie, I., Morozov, S. V., Chernyak, E. I., Rogachev, A. D., Korotkova, A. M., Vikhorev, A. V., Vasiliev, G. V., Shoeva, O. Y., Kumlehn, J., Gerasimova, S. V. & Khlestkina, E. K., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12705.

    Research output: Contribution to journal › Article › peer-review

  34. A software module to assess the metabolic potential of mutant strains of the bacterium Corynebacterium glutamicum

    Kazantsev, F. V., Trofimova, M. F., Khlebodarova, T. M., Matushkin, Y. G. & Lashin, S. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 897-903 7 p.

    Research output: Contribution to journal › Article › peer-review

  35. High prevalence of m.1555A > G in patients with hearing loss in the Baikal Lake region of Russia as a result of founder effect

    Borisova, T. V., Cherdonova, A. M., Pshennikova, V. G., Teryutin, F. M., Morozov, I. V., Bondar, A. A., Baturina, O. A., Kabilov, M. R., Romanov, G. P., Solovyev, A. V., Fedorova, S. A. & Barashkov, N. A., Dec 2024, In: Scientific Reports. 14, 1, 10 p., 15342.

    Research output: Contribution to journal › Article › peer-review

  36. Shedding New Light on the Hull-Pericarp Adhesion Mechanisms of Barley Grains by Transcriptomics Analysis of Isogenic NUD1 and nud1 Lines

    Gerasimova, S. V., Korotkova, A. M., Rodrigues, T. D. S., Vikhorev, A., Kolosovskaya, E. V., Vasiliev, G. V., Melzer, M., Hertig, C. W., Kumlehn, J. & Khlestkina, E. K., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 13108.

    Research output: Contribution to journal › Article › peer-review

  37. Spectrum and Prevalence of Rare APOE Variants and Their Association with Familial Dysbetalipoproteinemia

    Blokhina, A. V., Ershova, A. I., Kiseleva, A. V., Sotnikova, E. A., Zharikova, A. A., Zaicenoka, M., Vyatkin, Y. V., Ramensky, V. E., Kutsenko, V. A., Garbuzova, E. V., Divashuk, M. G., Litinskaya, O. A., Pokrovskaya, M. S., Shalnova, S. A., Meshkov, A. N. & Drapkina, O. M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12651.

    Research output: Contribution to journal › Article › peer-review

  38. Photocleavable Guide crRNAs for a Light-Controllable CRISPR/Cas9 System

    Sakovina, L., Vokhtantsev, I., Akhmetova, E., Vorobyeva, M., Vorobjev, P., Zharkov, D. O. & Novopashina, D., 19 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12392.

    Research output: Contribution to journal › Article › peer-review

  39. Kinetic Features of Degradation of R-Loops by RNase H1 from Escherichia coli

    Kuznetsova, A. A., Kosarev, I. A., Timofeyeva, N. A., Novopashina, D. S. & Kuznetsov, N. A., 15 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12263.

    Research output: Contribution to journal › Article › peer-review

  40. The Trajectory of Damaged-Base Eversion into the Active Site of Apurinic/Apyrimidinic Endonuclease APE1 Regulates This Enzyme’s Substrate Specificity

    Bulygin, A. A. & Kuznetsov, N. A., 15 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12287.

    Research output: Contribution to journal › Article › peer-review

  41. Role of R-Loop Structure in Efficacy of RNA Elongation Synthesis by RNA Polymerase from Escherichia coli

    Timofeyeva, N. A., Tsoi, E. I., Novopashina, D. S., Kuznetsova, A. A. & Kuznetsov, N. A., 14 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12190.

    Research output: Contribution to journal › Article › peer-review

  42. Investigation of Antibiotic Resistance of E. coli Associated with Farm Animal Feces with Participation of Citizen Scientists

    Timofeeva, A. M., Galyamova, M. R., Krivosheev, D. M., Karabanov, S. Y. & Sedykh, S. E., 13 Nov 2024, In: Microorganisms. 12, 11, 2308.

    Research output: Contribution to journal › Article › peer-review

  43. Apurinic/apyrimidinic endonuclease 1 has major impact in prevention of suicidal covalent DNA–protein crosslink with apurinic/apyrimidinic site in cellular extracts

    Lebedeva, N. A., Dyrkheeva, N. S., Rechkunova, N. I. & Lavrik, O. I., Nov 2024, In: IUBMB Life. 76, 11, p. 987-996 10 p.

    Research output: Contribution to journal › Article › peer-review

  44. The dual role of methylglyoxal in plant stress response and regulation of DJ-1 protein

    Sun, Y., Chen, S., Grin, I. R., Zharkov, D. O., Yu, B. & Li, H., Nov 2024, In: Physiologia Plantarum. 176, 6, 15 p., e14608.

    Research output: Contribution to journal › Review article › peer-review

  45. Сравнительный анализ первичной структуры и получение рекомбинантной поли(ADP-рибоза)полимеразы 1 долгоживущего Heterocephalus glaber

    Naumenko, K. N., Nurislamov, A. R., Nazarov, K. D., Fishman, V. S., Popov, A. A., Petruseva, I. O., Evdokimov, A. N. & Lavrik, O. I., Nov 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 7, p. 688-695 8 p., 2.

    Research output: Contribution to journal › Article › peer-review

  46. Blood Growth Factor Levels in Patients with Systemic Lupus Erythematosus: High Neuregulin-1 Is Associated with Comorbid Cardiovascular Pathology

    Ermakov, E. A., Melamud, M. M., Boiko, A. S., Ivanova, S. A., Sizikov, A. E., Nevinsky, G. A. & Buneva, V. N., 14 Oct 2024, In: Life. 14, 10, 1305.

    Research output: Contribution to journal › Article › peer-review

  47. Cleavage of DNA Substrate Containing Nucleotide Mismatch in the Complementary Region to sgRNA by Cas9 Endonuclease: Thermodynamic and Structural Features

    Baranova, S. V., Zhdanova, P. V., Koveshnikova, A. D., Pestryakov, P. E., Vokhtantsev, I. P., Chernonosov, A. A. & Koval, V. V., 9 Oct 2024, In: International Journal of Molecular Sciences. 25, 19, 10862.

    Research output: Contribution to journal › Article › peer-review

  48. An Approach to the Synthesis of Cyclic Photocleavable RNA for Photoactivatable CRISPR/Cas9 System

    Ivanskaya, E. V., Meschaninova, M. I., Vorobyeva, M. A., Zharkov, D. O. & Novopashina, D. S., Oct 2024, In: Russian Journal of Bioorganic Chemistry. 50, 5, p. 1807-1821 15 p.

    Research output: Contribution to journal › Article › peer-review

  49. Circulating miRNAs in the Plasma of Post-COVID-19 Patients with Typical Recovery and Those with Long-COVID Symptoms: Regulation of Immune Response-Associated Pathways

    Timofeeva, A. M., Nikitin, A. O. & Nevinsky, G. A., Oct 2024, In: Non-Coding RNA. 10, 5, 48.

    Research output: Contribution to journal › Article › peer-review

  50. Enhanced thermal stability enables human mismatch-specific thymine-DNA glycosylase to catalyse futile DNA repair

    Manapkyzy, D., Joldybayeva, B., Ishchenko, A. A., Matkarimov, B. T., Zharkov, D. O., Taipakova, S. & Saparbaev, M. K., Oct 2024, In: PLoS ONE. 19, 10, 32 p., e0304818.

    Research output: Contribution to journal › Article › peer-review

  51. Error-Prone DNA Synthesis on Click-Ligated Templates

    Endutkin, A. V., Yakovlev, A. O., Zharkov, T. D., Golyshev, V. M., Yudkina, A. V. & Zharkov, D. O., Oct 2024, In: Doklady Biochemistry and Biophysics. 518, 1, p. 376-381 6 p., 11.

    Research output: Contribution to journal › Article › peer-review

  52. Double oxalates of Rh(III) with Cu(II) and Zn(II) – Effective precursors of nanoalloys for hydrogen production by steam reforming of propane

    Garkul, I. A., Zadesenets, A. V., Filatov, E. Y., Байдина, И. А., Plusnin, P. E., Urlukov, A. S., Potemkin, D. I. & Korenev, S. V., 11 Sept 2024, In: International Journal of Hydrogen Energy. 82, p. 611-623 13 p.

    Research output: Contribution to journal › Article › peer-review

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