1. 2020
  2. Reading Targeted DNA Damage in the Active Demethylation Pathway: Role of Accessory Domains of Eukaryotic AP Endonucleases and Thymine-DNA Glycosylases

    Popov, A. V., Grin, I. R., Dvornikova, A. P., Matkarimov, B. T., Groisman, R., Saparbaev, M. & Zharkov, D. O., 13 Mar 2020, In: Journal of Molecular Biology. 432, 6, p. 1747-1768 22 p.

    Research output: Contribution to journalReview articlepeer-review

  3. Catalytically Competent Conformation of the Active Site of Human 8-Oxoguanine-DNA Glycosylase

    Popov, A. V., Yudkina, A. V., Vorobjev, Y. N. & Zharkov, D. O., 17 Feb 2020, In: Biochemistry (Moscow). 85, 2, p. 192-204 13 p.

    Research output: Contribution to journalArticlepeer-review

  4. Preface

    Zharkov, D. O., 1 Jan 2020, In: Advances in experimental medicine and biology. 1241, p. v

    Research output: Contribution to journalEditorialpeer-review

  5. Рибонуклеаза Ribonuclease pumilus ингибирует миграцию клеток аденокарциномы двенадцатиперстной кишки человека HuTu 80

    Zelenikhin, P. V., Ead Mohamed, I. S., Nadyrova, A. I., Sirotkina, A. A., Ulyanova, V. V., Mironova, N. L., Mitkevich, V. A., Makarov, A. A., Zenkova, M. A. & Ilinskaya, O. N., 1 Jan 2020, In: Molekuliarnaia biologiia. 54, 1, p. 146-152 7 p.

    Research output: Contribution to journalArticlepeer-review

  6. Bacillus pumilus Ribonuclease Inhibits Migration of Human Duodenum Adenocarcinoma HuTu 80 Cells

    Zelenikhin, P., Mohamed, I. S. E., Nadyrova, A., Sirotkina, A. A., Ulyanova, V. V., Mironova, N. L., Mitkevieh, V. A., Makarov, A. A., Zenkova, M. A. & Ilinskaya, O. N., Jan 2020, In: Molecular Biology. 54, 1, p. 128-133 6 p.

    Research output: Contribution to journalArticlepeer-review

  7. Mechanistic insight into the role of Poly(ADP-ribosyl)ation in DNA topology modulation and response to DNA damage

    Matkarimov, B. T., Zharkov, D. O. & Saparbaev, M. K., Jan 2020, In: Mutagenesis. 35, 1, p. 107-118 12 p.

    Research output: Contribution to journalReview articlepeer-review

  8. Requirements for DNA bubble structure for efficient cleavage by helix-two-turn-helix DNA glycosylases

    Makasheva, K. A., Endutkin, A. V. & Zharkov, D. O., Jan 2020, In: Mutagenesis. 35, 1, p. 119-128 10 p.

    Research output: Contribution to journalArticlepeer-review

  9. Activity of DNA glycosylases on non-canonical DNA substrates

    Дятлова, Е. А. & Жарков, Д. О., 2020, p. 568. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  10. Chapter 8: Substrate specificities of DNA glycosylases in vitro and in vivo: Substrate specificities of DNA glycosylases in vitro and in vivo

    Ендуткин, А. В. & Жарков, Д. О., 2020, DNA Damage, DNA Repair and Disease: Volume 1. Dizdaroglu, M. & Lloyd, R. S. (eds.). London: Royal Society of Chemistry, Vol. 1. p. 175-203 29 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

  11. Molecular dynamic and kinetic characterization of Cas9 mutants for improving specificity of genome editing tools

    Вохтанцев, И. П. & Кадцын, Е. Д., 2020, p. 55. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  12. Platinum polyoxoniobates have a potential as an anticancer agent

    Юдкина, А. В., Вохтанцев, И. П., Соколов, М. Н. & Абрамов, П. А., 2020, p. 604. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  13. Preface

    Zharkov, D. O., 2020, MECHANISMS OF GENOME PROTECTION AND REPAIR. Zharkov, DO. (ed.). Springer International Publishing AG, p. V-V 1 p. (Advances in Experimental Medicine and Biology; vol. 1241).

    Research output: Chapter in Book/Report/Conference proceedingForeword/postscriptResearchpeer-review

  14. Single-nucleotide polymorphisms of hNEIL2 gene: from protein structure to functions in base excision DNA repair

    Каххарова, З. И., Грин, И. Р. & Петрова, Д. В., 2020, p. 574. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  15. The influence of ligand structure of ruthenium nitrosyl complexes on their biological activity

    Хантакова, Д. В. & Грин, И. Р., 2020, p. 577. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  16. The role of DNA repair in active DNA demethylation is studded by the construct based on the CRISPR/Cas9 system

    Каххарова, З. И., Грин, И. Р. & Хантакова, Д. В., 2020, p. 575. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  17. Методы редактирования генов и геномов

    Аббат, А. В., Александрушкина, Н. А., Андреенков, О. В., Артюхов, А. С., Байрамова, Э. М., Балацкий, А. В., Березиков, Е. В., Василенко, Ю. С., Васильев, А. В., Васильев, П. А., Волкова, Е. И., Воротеляк, Е. А., Вохтанцев, И. П., Вударски, Я., Вяткин, Ю. В., Георгиев, П. Г., Герасимова, С. В., Гершович, П. М., Гольцова, А. С., Гущин, Д. Ю., & 60 othersДавлетшина, Г. И., Дашинимаев, Э. Б., Дейнеко, Е. В., Демаков, С. А., Дианов, Г. Л., Дыйканов, Д. Т., Евсеева, М. Н., Егорова, А. А., Елисафенко, Е. А., Ендуткин, А. В., Жарков, Д. О., Живень, М. К., Журавлев, Е. С., Загорская, А. А., Закиян, С. М., Захарова, И. С., Зотова, А. А., Иванова, К. А., Карагуяр, М. Н., Карпов, В. Л., Коваленко, В. Р., Кулебякин, К. Ю., Кулишова, Л. М., Лактионов, П. П., Мазуров, Д. В., Макаревич, П. И., Максименко, О. Г., Маланханова, Т. Б., Малахова, А. А., Маренкова, Т. В., Матвеева, А. М., Медведев, С. П., Мещерякова, Н. В., Пермякова, Н. В., Прокофьев, А. В., Рождественский, Т. С., Романов, С. Е., Ростовцева, А. И., Рубцов, Ю. П., Рысенкова, К. Д., Семина, Е. В., Сидорчук, Ю. В., Скрябин, Б. В., Скрябина, М. Н., Смирнова, А. М., Сорокин, М. А., Степанов, Г. А., Стуканев, В. К., Торгашева, Н. А., Тюрин-Кузьмин, П. А., Устьянцева, Е. И., Устьянцев, К. В., Чичерин, И. В., Шарипова, Д. В., Шевченко, А. И., Шепелев, М. В., Шерстюк, В. В., Шмакова, А. А., Щепетов, Д. М. & Юрлова, Е. В., 2020, Новосибирск: ФГУП "Издательство СО РАН". 550 p.

    Research output: Book/ReportBookResearchpeer-review

  18. Получение модифицированных ДНК-субстратов для исследования механизма действия нуклеаз геномного редактирования

    Вохтанцев, И. П., Ендуткин, А. В., Кулишова, Л. М., Торгашева, Н. А., Дианов, Г. Л. & Жарков, Д. О., 2020, Методы редактирования генов и геномов. Закиян, С. М., Медведев, С. П., Дементьева, Е. В. & Власов, В. В. (eds.). Новосибирск: ФГУП "Издательство СО РАН", p. 485-493 9 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

  19. Экзосомы молока лошади: выделение, микроскопический и биохимический анализ, перспективы использования

    SEDYKH, S. E., KULESHOVA, A. E., PURVINSH, L. V., BURKOVA, E. E., GRIGORIEVA, A. E., EVTUSHENKO, E. G., STEPANOV, G. A., RYABCHIKOVA, E. I. & NEVINSKII, G. A., 2020, In: Biotekhnologiya. 36, 5, p. 62-71 10 p.

    Research output: Contribution to journalArticlepeer-review

  20. 2019
  21. Photoinduced inhibition of DNA repair enzymes and the possible mechanism of photochemical transformations of the ruthenium nitrosyl complex [RuNO(β-Pic)2(NO2)2OH

    Mikhailov, A. A., Khantakova, D. V., Nichiporenko, V. A., Glebov, E. M., Grivin, V. P., Plyusnin, V. F., Yanshole, V. V., Petrova, D. V., Kostin, G. A. & Grin, I. R., 11 Dec 2019, In: Metallomics : integrated biometal science. 11, 12, p. 1999-2009 11 p.

    Research output: Contribution to journalArticlepeer-review

  22. Guide RNA modification as a way to improve CRISPR/Cas9-based genome-editing systems

    Filippova, J., Matveeva, A., Zhuravlev, E. & Stepanov, G., 1 Dec 2019, In: Biochimie. 167, p. 49-60 12 p.

    Research output: Contribution to journalReview articlepeer-review

  23. Transient protein–protein complexes in base excision repair

    Endutkin, A. V., Yudkina, A. V., Sidorenko, V. S. & Zharkov, D. O., 22 Nov 2019, In: Journal of Biomolecular Structure and Dynamics. 37, 17, p. 4407-4418 12 p.

    Research output: Contribution to journalReview articlepeer-review

  24. Are small nucleolar RNAs "cRISPRable"? A report on box C/D small nucleolar RNA editing in human cells

    Filippova, J. A., Matveeva, A. M., Zhuravlev, E. S., Balakhonova, E. A., Prokhorova, D. V., Malanin, S. J., Mahmud, R. S., Grigoryeva, T. V., Anufrieva, K. S., Semenov, D. V., Vlassov, V. V. & Stepanov, G. A., 4 Nov 2019, In: Frontiers in Pharmacology. 10, 16 p., 01246.

    Research output: Contribution to journalArticlepeer-review

  25. Platinum Polyoxoniobates Form Adducts with DNA

    Yudkina, A. V., Sokolov, M. N., Abramov, P. A., Grin, I. R. & Zharkov, D. O., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 641-646 6 p.

    Research output: Contribution to journalArticlepeer-review

  26. Relative Efficiency of Recognition of 5-Methylcytosine and 5-Hydroxymethylcytosine by Methyl-Dependent DNA Endonuclease GlaI

    Petrova, D. V., Naumenko, M. B., Khantakova, D. V., Grin, I. R. & Zharkov, D. O., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 625-629 5 p.

    Research output: Contribution to journalArticlepeer-review

  27. Systems of Delivery of CRISPR/Cas9 Ribonucleoprotein Complexes for Genome Editing

    Amirkhanov, R. N. & Stepanov, G. A., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 431-437 7 p.

    Research output: Contribution to journalReview articlepeer-review

  28. Mechanism of stimulation of DNA binding of the transcription factors by human apurinic/apyrimidinic endonuclease 1, APE1

    Bazlekowa-Karaban, M., Prorok, P., Baconnais, S., Taipakova, S., Akishev, Z., Zembrzuska, D., Popov, A. V., Endutkin, A. V., Groisman, R., Ishchenko, A. A., Matkarimov, B. T., Bissenbaev, A., Le Cam, E., Zharkov, D. O., Tudek, B. & Saparbaev, M., 1 Oct 2019, In: DNA Repair. 82, p. 102698 18 p., 102698.

    Research output: Contribution to journalArticlepeer-review

  29. Isoforms of base excision repair enzymes produced by alternative splicing

    Boldinova, E. O., Khairullin, R. F., Makarova, A. V. & Zharkov, D. O., 3 Jul 2019, In: International Journal of Molecular Sciences. 20, 13, 22 p., 3279.

    Research output: Contribution to journalReview articlepeer-review

  30. Development of constructs based on the CRISPR/Cas9 system for studying the role of non-canonical mismatch repair in editing the epigenome

    Kakhkharova, Z. I., Khantakova, D. V., Petrova, D. V. & Grin, I. R., Jul 2019, In: FEBS Open Bio. 9, p. 399-399 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  31. DNA lesions against genome editing: how Cas9 cleaves the substrates with damages

    Vokhtantsev, I. P., Endutkin, A. V., Kulishova, L. M. & Zharkov, O., Jul 2019, In: FEBS Open Bio. 9, p. 397-397 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  32. Effects of single-nucleotide polymorphisms in human NEIL2 gene on functional role in DNA repair

    Kakhkharova, Z. I., Khantakova, D. V. & Grin, I. R., Jul 2019, In: FEBS Open Bio. 9, p. 157-158 2 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  33. Photocleavable guide RNAs for controllable genome editing with CRISPR/Cas9 system

    Novopashina, D., Khabardina, E., Vokhtantsev, I., Kim, D., Venyaminova, A. & Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 400-400 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  34. Structural and biochemical insights of new atypical Fpg/Nei DNA-glycosylases

    Yudkina, A., Garcia-Diaz, M. & Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 252-252 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  35. The role of transient protein-protein interactions in base excision repair

    Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 254-254 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  36. Critical Sites of DNA Backbone Integrity for Damaged Base Removal by Formamidopyrimidine-DNA Glycosylase

    Endutkin, A. V. & Zharkov, D. O., 18 Jun 2019, In: Biochemistry. 58, 24, p. 2740-2749 10 p.

    Research output: Contribution to journalArticlepeer-review

  37. Antisense Oligonucleotides Immobilized on Silicon-Organic Nanoparticles as a Tool for Prolonged Correction of Hypertensive States

    Levina, A. S., Repkova, M. N., Klimov, L. O., Ryazanova, M. A., Markel, A. L. & Zarytova, V. F., 15 May 2019, In: Bulletin of Experimental Biology and Medicine. 167, 1, p. 116-119 4 p.

    Research output: Contribution to journalArticlepeer-review

  38. Reading and misreading 8-oxoguanine, a paradigmatic ambiguous nucleobase

    Yudkina, A. V., Shilkin, E. S., Endutkin, A. V., Makarova, A. V. & Zharkov, D. O., 1 May 2019, In: Crystals. 9, 5, 31 p., 269.

    Research output: Contribution to journalArticlepeer-review

  39. Conformational Dynamics of Damage Processing by Human DNA Glycosylase NEIL1

    Kladova, O. A., Grin, I. R., Fedorova, O. S., Kuznetsov, N. A. & Zharkov, D. O., 15 Mar 2019, In: Journal of Molecular Biology. 431, 6, p. 1098-1112 15 p.

    Research output: Contribution to journalArticlepeer-review

  40. Observations on Protecting Groups in the Synthesis of Mono- and Triphosphates of Amino Alcohols

    Sherstyuk, Y. V., Chalova, P. V., Silnikov, V. N. & Abramova, T. V., 4 Mar 2019, In: Organic Preparations and Procedures International. 51, 2, p. 182-191 10 p.

    Research output: Contribution to journalArticlepeer-review

  41. Base Excision DNA Repair Deficient Cells: From Disease Models to Genotoxicity Sensors

    Kim, D. V., Makarova, A. V., Miftakhova, R. R. & Zharkov, D. O., 1 Jan 2019, In: Current Pharmaceutical Design. 25, 3, p. 298-312 15 p.

    Research output: Contribution to journalReview articlepeer-review

  42. abstract OR-3: Fleeting ensembles: Transient protein-protein interactions in DNA repair

    Жарков, Д. О., 2019, In: International Journal of Biomedicine. 9, S1, p. 6-7 2 p.

    Research output: Contribution to journalConference articlepeer-review

  43. 2018
  44. Aberrant repair initiated by the adenine-DNA glycosylase does not play a role in UV-induced mutagenesis in Escherichia coli

    Zutterling, C., Mursalimov, A., Talhaoui, I., Koshenov, Z., Akishev, Z., Bissenbaev, A. K., Mazon, G., Geacintov, N. E., Gasparutto, D., Groisman, R., Zharkov, D. O., Matkarimov, B. T. & Saparbaev, M., 5 Dec 2018, In: PeerJ. 6, 12, 23 p., 6029.

    Research output: Contribution to journalArticlepeer-review

  45. Brain as a potential target for antisense oligonucleotide treatment of hypertensive disease. Experimental study on the hypertensive ISIAH rat strain

    Levina, A. S., Zarytova, V. F., Repkova, M. N., Klimov, O. L., Seryapina, A. A., Shikina, N. V., Shevelev, O. B. & Markel, A. L., Dec 2018, In: Basic and Clinical Pharmacology and Toxicology. 124, p. 6-7 2 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  46. Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation

    Gruber, D. R., Toner, J. J., Miears, H. L., Shernyukov, A. V., Kiryutin, A. S., Lomzov, A. A., Endutkin, A. V., Grin, I. R., Petrova, D. V., Kupryushkin, M. S., Yurkovskaya, A. V., Johnson, E. C., Okon, M., Bagryanskaya, E. G., Zharkov, D. O. & Smirnov, S. L., 16 Nov 2018, In: Nucleic Acids Research. 46, 20, p. 10827-10839 13 p.

    Research output: Contribution to journalArticlepeer-review

  47. Nucleotide modifications decrease innate immune response induced by synthetic analogs of snRNAs and snoRNAs

    Stepanov, G., Zhuravlev, E., Shender, V., Nushtaeva, A., Balakhonova, E., Mozhaeva, E., Kasakin, M., Koval, V., Lomzov, A., Pavlyukov, M., Malyants, I., Zhorov, M., Kabilova, T., Chernolovskaya, E., Govorun, V., Kuligina, E., Semenov, D. & Richter, V., 2 Nov 2018, In: Genes. 9, 11, 18 p., 531.

    Research output: Contribution to journalArticlepeer-review

  48. ANTISENSE CONTAINING NANOCOMPOSITES IN HYPERTENSION TREATMENT IN ISIAH RATS

    Klimov, L., Ryazanova, M., Levina, A. & Markel, A., Oct 2018, In: Journal of Hypertension. 36, p. E18-E18 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  49. NANOCOMPOSITE (SI-ODN-II), CONTAINING ANTISENSE OLIGONUCLEOTIDES TARGETED TO MRNA OF THE BETA-1-ADRENORECEPTORS FOR HYPERTENSION THERAPY IN RATS WITH STRESS-SENSITIVE ARTERIAL HYPERTENSION (ISIAH RATS)

    Ryazanova, M., Klimov, L., Seryapina, A., Zarytova, V., Repkova, M., Levina, A. & Markel, A., Oct 2018, In: Journal of Hypertension. 36, p. E81-E82 2 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  50. Non-agglomerated silicon-organic nanoparticles and their nanocomplexes with oligonucleotides: Synthesis and properties

    Levina, A. S., Repkova, M. N., Shikina, N. V., Ismagilov, Z. R., Yashnik, S. A., Semenov, D. V., Savinovskaya, Y. I., Mazurkova, N. A., Pyshnaya, I. A. & Zarytova, V. F., 21 Sept 2018, In: Beilstein Journal of Nanotechnology. 9, 1, p. 2516-2525 10 p.

    Research output: Contribution to journalArticlepeer-review

ID: 3086315