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  1. 2024

  2. A bird's-eye overview of molecular mechanisms regulating feed intake in chickens—with mammalian comparisons

    Volyanskaya, A. R., Akberdin, I. R., Kulyashov, M. A., Yevshin, I. S., Romanov, M. N., Shagimardanova, E. I., Gusev, O. A. & Kolpakov, F. A., 1 Jun 2024, In: Animal Nutrition. 17, p. 61-74

    Research output: Contribution to journal › Article › peer-review

  3. Physiologically based pharmacokinetic model for predicting the biodistribution of albumin nanoparticles after induction and recovery from acute lung injury

    Акбердин, И. Р., 8 May 2024, In: Heliyon.

    Research output: Contribution to journal › Article › peer-review

  4. Hormone-regulated expansins: expression, localization, and cell wall biomechanics in Arabidopsis root growth

    Samalova, M., Melnikava, A., Elsayad, K., Peaucelle, A., Gahurova, E., Gumulec, J., Spyroglou, I., Zemlyanskaya, E. V., Ubogoeva, E. V., Balkova, D., Demko, M., Blavet, N., Alexiou, P., Benes, V., Mouille, G. & Hejatko, J., Jan 2024, In: Plant Physiology. 194, 1, p. 209-228 20 p.

    Research output: Contribution to journal › Article › peer-review

  5. 2023

  6. State-of the-Art Constraint-Based Modeling of Microbial Metabolism: From Basics to Context-Specific Models with a Focus on Methanotrophs

    Куляшов, М. А., Колмыков, С. К., Хлебодарова, Т. М. & Акбердин, И. Р., 14 Dec 2023, In: Microorganisms. 11, 12, 22 p., 2987.

    Research output: Contribution to journal › Review article › peer-review

  7. Fishing Innate Immune System Properties through the Transcriptomic Single-Cell Data of Teleostei

    Bobrovskikh, A. V., Zubairova, U. S. & Doroshkov, A. V., 12 Dec 2023, In: Biology. 12, 12, 1516.

    Research output: Contribution to journal › Review article › peer-review

  8. Программа расшифровки аббревиатур сущностей в рефератах научных публикаций на основе их контекста (ЭНДДекрипт) / Program for decoding entity abbreviations in abstracts of scientific publications based on their context (ANDDecrypt)

    Иванисенко, Т. В., Деменков, П. С. & Иванисенко, В. А., 8 Dec 2023, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2023686851, 16 Nov 2023, Priority date 16 Nov 2023, Priority No. 2023684403

    Research output: Patent › Software registration

  9. DyCeModel: a tool for 1D simulation for distribution of plant hormones controlling tissue patterning

    Azarova, D. S., Omelyanchuk, N. A., Mironova, V. V., Zemlyanskaya, E. V. & Lavrekha, V. V., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 890-897 8 p.

    Research output: Contribution to journal › Article › peer-review

  10. Gbs-dp: a bioinformatics pipeline for processing data coming from genotyping by sequencing

    Pronozin, A. Y., Salina, E. A. & Afonnikov, D. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 737-745 9 p.

    Research output: Contribution to journal › Article › peer-review

  11. Gene networks for use in metabolomic data analysis of blood plasma from patients with postoperative delirium

    Ivanisenko, V. A., Basov, N. V., Makarova, A. A., Venzel, A. S., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Kleshchev, M. A., Gaisler, E. V., Moroz, G. B., Plesko, V. V., Sotnikova, Y. S., Patrushev, Y. V., Lomivorotov, V. V., Kolchanov, N. A. & Pokrovsky, A. G., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 768-775 8 p.

    Research output: Contribution to journal › Article › peer-review

  12. InterTransViewer: a comparative description of differential gene expression profiles from different experiments

    Tyapkin, А. V., Lavrekha, V. V., Ubogoeva, E. V., Oshchepkov, D. Y., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1042-1052 11 p.

    Research output: Contribution to journal › Article › peer-review

  13. Intratumor heterogeneity: models of malignancy emergence and evolution

    Ivanov, R. A. & Lashin, S. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 815-819 5 p.

    Research output: Contribution to journal › Article › peer-review

  14. Laboratory information systems for research management in biology

    Mukhin, A. M., Kazantsev, F. V. & Lashin, S. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 898-905 8 p.

    Research output: Contribution to journal › Article › peer-review

  15. Molecular-genetic pathways of hepatitis C virus regulation of the expression of cellular factors PREB and PLA2G4C, which play an important role in virus replication

    Mishchenko, E. L., Makarova, A. A., Antropova, E. A., Venzel, A. S., Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 776-783 8 p.

    Research output: Contribution to journal › Article › peer-review

  16. Prioritization of potential pharmacological targets for the development of anti-hepatocarcinoma drugs modulating the extrinsic apoptosis pathway: the reconstruction and analysis of associative gene networks help

    Demenkov, P. S., Antropova, E. A., Adamovskaya, A. V., Mishchenko, E. L., Khlebodarova, T. M., Ivanisenko, T. V., Ivanisenko, N. V., Venzel, A. S., Lavrik, I. N. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 784-793 10 p.

    Research output: Contribution to journal › Article › peer-review

  17. Reconstruction and analysis of the gene regulatory network for cell wall function in Arabidopsis thaliana L. leaves in response to water deficit

    Volyanskaya, A. R., Antropova, E. A., Zubairova, U. S., Demenkov, P. S., Venzel, A. S., Orlov, Y. L., Makarova, A. A., Ivanisenko, T. V., Gorshkova, T. A., Aglyamova, A. R., Kolchanov, N. A., Chen, M. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1031-1041 11 p.

    Research output: Contribution to journal › Article › peer-review

  18. The central regulatory circuit in the gene network controlling the morphogenesis of Drosophila mechanoreceptors: an in silico analysis

    Bukharina, T. A., Golubyatnikov, V. P. & Furman, D. P., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 746-754 9 p.

    Research output: Contribution to journal › Article › peer-review

  19. Определение содержания меланина и антоцианов в зернах ячменя на основе анализа цифровых изображений методами машинного обучения

    Komyshev, E. G., Genaev, M. A., Busov, I. D., Kozhekin, M. V., Artemenko, N. V., Glagoleva, A. Y., Koval, V. S. & Afonnikov, D. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 859-868 10 p., 15.

    Research output: Contribution to journal › Article › peer-review

  20. Bioinformatic Analysis Reveals the Role of Translation Elongation Efficiency Optimisation in the Evolution of Ralstonia Genus

    Korenskaia, A. Y., Matushkin, Y. G., Mustafin, Z. S., Lashin, S. A. & Klimenko, A. I., Oct 2023, In: Biology. 12, 10, 1338.

    Research output: Contribution to journal › Article › peer-review

  21. Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder

    Uvarova, Y. E., Demenkov, P. S., Kuzmicheva, I. N., Venzel, A. S., Mischenko, E. L., Ivanisenko, T. V., Efimov, V. M., Bannikova, S. V., Vasilieva, A. R., Ivanisenko, V. A. & Peltek, S. E., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 12 p.

    Research output: Contribution to journal › Article › peer-review

  22. BGRS: bioinformatics of genome regulation and data integration

    Orlov, Y. L., Chen, M., Kolchanov, N. A. & Hofestädt, R., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 20230032.

    Research output: Contribution to journal › Article › peer-review

  23. Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection

    Antropova, E. A., Khlebodarova, T. M., Demenkov, P. S., Volianskaia, A. R., Venzel, A. S., Ivanisenko, N. V., Gavrilenko, A. D., Ivanisenko, T. V., Adamovskaya, A. V., Revva, P. M., Kolchanov, N. A., Lavrik, I. N. & Ivanisenko, V. A., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 12 p.

    Research output: Contribution to journal › Article › peer-review

  24. Central Regulatory Circuit of the Drosophila Mechanoreceptor Morphogenesis System: Effects of Mutations

    Furman, D. P., Bukharina, T. A. & Golubyatnikov, V. P., Sept 2023, In: Journal of Applied and Industrial Mathematics. 17, 3, p. 535-543 9 p.

    Research output: Contribution to journal › Article › peer-review

  25. Delay-differential SEIR modeling for improved modelling of infection dynamics

    Киселев, И., Акбердин, И. Р. & Колпаков, Ф., 18 Aug 2023, In: Scientific Reports. 13, 1, 15 p., 13439.

    Research output: Contribution to journal › Article › peer-review

  26. Numerous Trigger-like Interactions of Kinases/Protein Phosphatases in Human Skeletal Muscles Can Underlie Transient Processes in Activation of Signaling Pathways during Exercise

    Vertyshev, A. Y., Akberdin, I. R. & Kolpakov, F. A., 7 Jul 2023, In: International Journal of Molecular Sciences. 24, 13, 11223.

    Research output: Contribution to journal › Review article › peer-review

  27. Comparison of the evolutionary patterns of DNA repeats in ancient and young invertebrate species flocks of Lake Baikal

    Yuxiang, W., Peretolchina, T. E., Romanova, E. V. & Sherbakov, D. Y., Jul 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 4, p. 349-356 8 p., 7.

    Research output: Contribution to journal › Article › peer-review

  28. ICAnnoLncRNA: A Snakemake Pipeline for a Long Non-Coding-RNA Search and Annotation in Transcriptomic Sequences

    Pronozin, A. Y. & Afonnikov, D. A., 24 Jun 2023, In: Genes. 14, 7, 1331.

    Research output: Contribution to journal › Article › peer-review

  29. A New Visualization and Analysis Method for a Convolved Representation of Mass Computational Experiments with Biological Models

    Klimenko, A. I., Vorobeva, D. A. & Lashin, S. A., Jun 2023, In: Mathematics. 11, 12, 2783.

    Research output: Contribution to journal › Article › peer-review

  30. Assembly and Analysis of Plastomes for 15 Potato Cultivars Grown in Russia

    Karetnikov, D. I., Salina, E. A., Kochetov, A. V. & Afonnikov, D. A., Jun 2023, In: Agronomy. 13, 6, 1454.

    Research output: Contribution to journal › Article › peer-review

  31. Research Topics of the Bioinformatics of Gene Regulation

    Orlov, Y. L., Anashkina, A. A., Kumeiko, V. V., Chen, M. & Kolchanov, N. A., 15 May 2023, In: International Journal of Molecular Sciences. 24, 10, 8774.

    Research output: Contribution to journal › Article › peer-review

  32. Analysis of Genome Structure and Its Variations in Potato Cultivars Grown in Russia

    Karetnikov, D. I., Vasiliev, G. V., Toshchakov, S. V., Shmakov, N. A., Genaev, M. A., Nesterov, M. A., Ibragimova, S. M., Rybakov, D. A., Gavrilenko, T. A., Salina, E. A., Patrushev, M. V., Kochetov, A. V. & Afonnikov, D. A., 16 Mar 2023, In: International Journal of Molecular Sciences. 24, 6, 5713.

    Research output: Contribution to journal › Article › peer-review

  33. Impact of Negative Feedbacks on De Novo Pyrimidines Biosynthesis in Escherichia coli

    Akberdin, I. R., Kozlov, K. N., Kazantsev, F. V., Fadeev, S. I., Likhoshvai, V. A. & Khlebodarova, T. M., 2 Mar 2023, In: International Journal of Molecular Sciences. 24, 5, 4806.

    Research output: Contribution to journal › Article › peer-review

  34. Three Cycles of Continuous Propagation of a Severe PSTVd Strain NicTr-3 in Solanum lycopersicum cv. Rutgers Resulted in Its Attenuation and Very Mild Disease Symptoms in Potato

    Kochetov, A. V., Shmakov, N., Afonnikov, D. A., Vasiliev, G. V., Shatskaya, N. V., Egorova, A. A., Mironenko, N. V., Lashina, N. M., Khiutti, A. V. & Afanasenko, O. S., Mar 2023, In: Agronomy. 13, 3, 684.

    Research output: Contribution to journal › Article › peer-review

  35. Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

    Shikhevich, S., Chadaeva, I., Khandaev, B., Kozhemyakina, R., Zolotareva, K., Kazachek, A., Oshchepkov, D., Bogomolov, A., Klimova, N. V., Ivanisenko, V. A., Demenkov, P., Mustafin, Z., Markel, A., Savinkova, L., Kolchanov, N. A., Kozlov, V. & Ponomarenko, M., 16 Feb 2023, In: International Journal of Molecular Sciences. 24, 4, 3996.

    Research output: Contribution to journal › Article › peer-review

  36. Trait-Based Method of Quantitative Assessment of Ecological Functional Groups in the Human Intestinal Microbiome

    Kropochev, A. I., Lashin, S. A., Matushkin, Y. G. & Klimenko, A. I., 11 Jan 2023, In: Biology. 12, 1, 115.

    Research output: Contribution to journal › Article › peer-review

  37. Antitumor efficacy of multi-target in situ vaccinations with CpG oligodeoxynucleotides, anti-OX40, anti-PD1 antibodies, and aptamers

    Proskurina, A. S., Рузанова, В. С., Риттер, Г. С., Ефремов, Я. Р., Mustafin, Z. S., Лашин, С. А., Буракова, Е. А., Фокина, А. А., Zatsepin, T. S., Стеценко, Д. А., Леплина, О. Ю., Останин, А. А., Черных, Е. Р. & Bogachev, S. S., 2023, In: Journal of Biomedical Research. 37, 3, p. 194-212 19 p.

    Research output: Contribution to journal › Article › peer-review

  38. Image-based classification of wheat spikes by glume pubescence using convolutional neural networks

    Artemenko, N. V., Genaev, M. A., Epifanov, R. U., Komyshev, E. G., Kruchinina, Y. V., Koval, V. S., Goncharov, N. P. & Afonnikov, D. A., 2023, In: Frontiers in Plant Science. 14, 16 p., 1336192.

    Research output: Contribution to journal › Article › peer-review

  39. 2022

  40. Algorithm for the Reconstruction of Mathematical Frame Models of Bacterial Transcription Regulation

    Lakhova, T. N., Kazantsev, F. V., Mukhin, A. M., Kolchanov, N. A., Matushkin, Y. G. & Lashin, S. A., Dec 2022, In: Mathematics. 10, 23, 4480.

    Research output: Contribution to journal › Article › peer-review

  41. Plasma metabolomics and gene regulatory networks analysis reveal the role of nonstructural SARS-CoV-2 viral proteins in metabolic dysregulation in COVID-19 patients

    Ivanisenko, V. A., Gaisler, E. V., Basov, N. V., Rogachev, A. D., Cheresiz, S. V., Ivanisenko, T. V., Demenkov, P. S., Mishchenko, E. L., Khripko, O. P., Khripko, Y. I., Voevoda, S. M., Karpenko, T. N., Velichko, A. J., Voevoda, M. I., Kolchanov, N. A. & Pokrovsky, A. G., Dec 2022, In: Scientific Reports. 12, 1, 12 p., 19977.

    Research output: Contribution to journal › Article › peer-review

  42. The New Version of the ANDDigest Tool with Improved AI-Based Short Names Recognition

    Ivanisenko, T. V., Demenkov, P. S., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2022, In: International Journal of Molecular Sciences. 23, 23, 14934.

    Research output: Contribution to journal › Article › peer-review

  43. Компьютерный анализ особенностей регуляции гиперметилированных маркерных генов гепатокарциномы вирусными белками гепатита С

    Antropova, E. A., Khlebodarova, T. M., Demenkov, P. S., Venzel, A. S., Ivanisenko, N. V., Gavrilenko, A. D., Ivanisenko, T. V., Adamovskaya, A. V., Revva, P. M., Lavrik, I. N. & Ivanisenko, V. A., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 733-742 10 p., 2.

    Research output: Contribution to journal › Article › peer-review

  44. Контекстные сигналы в митохондриальных микроРНК млекопитающих

    Vishnevsky, O. V., Vorozheykin, P. S. & Titov, I. I., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 819-825 7 p., 12.

    Research output: Contribution to journal › Article › peer-review

  45. Молекулярные механизмы детерминации клеток сосудистой системы корня Arabidopsis thaliana L

    Sidorenko, A. D., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 721-732 12 p., 1.

    Research output: Contribution to journal › Article › peer-review

  46. Свойства малого мира научных организаций определяют динамику публикационной активности в области миРНК

    Firsov, A. B. & Titov, I. I., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 826-829 4 p., 13.

    Research output: Contribution to journal › Article › peer-review

  47. Фосфолипазы A2 человека: функциональный и эволюционный анализ

    Turnaev, I. I., Bocharnikova, M. E. & Afonnikov, D. A., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 787-797 11 p., 8.

    Research output: Contribution to journal › Article › peer-review

  48. Genomic analysis reveals cryptic diversity in aphelids and sheds light on the emergence of Fungi

    Mikhailov, K. V., Karpov, S. A., Letcher, P. M., Lee, P. A., Logacheva, M. D., Penin, A. A., Nesterenko, M. A., Pozdnyakov, I. R., Potapenko, E. V., Sherbakov, D. Y., Panchin, Y. V. & Aleoshin, V. V., 7 Nov 2022, In: Current Biology. 32, 21, p. 4607-4619.e7 21 p.

    Research output: Contribution to journal › Article › peer-review

  49. Physiologically Based Pharmacokinetic Modeling of Nanoparticle Biodistribution: A Review of Existing Models, Simulation Software, and Data Analysis Tools

    Кутумова, Е. О., Акбердин, И. Р., Киселев, И. Н., Шарипов, Р. Н., Егорова, В. С., Сырочева, А. О., Parodi, A., Замятнин, А. А. & Колпаков, Ф. А., 19 Oct 2022, In: International Journal of Molecular Sciences. 23, 20, 22 p., 12560.

    Research output: Contribution to journal › Review article › peer-review

  50. Bioinformatic Assessment of Factors Affecting the Correlation between Protein Abundance and Elongation Efficiency in Prokaryotes

    Korenskaia, A. E., Matushkin, Y. G., Lashin, S. A. & Klimenko, A. I., Oct 2022, In: International Journal of Molecular Sciences. 23, 19, 11996.

    Research output: Contribution to journal › Article › peer-review

  51. CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

    Lavrekha, V. V., Levitsky, V. G., Tsukanov, A. V., Bogomolov, A. G., Grigorovich, D. A., Omelyanchuk, N., Ubogoeva, E. V., Zemlyanskaya, E. V. & Mironova, V., 18 Aug 2022, In: Frontiers in Plant Science. 13, 942710.

    Research output: Contribution to journal › Article › peer-review

  52. Web-MCOT Server for Motif Co-Occurrence Search in ChIP-Seq Data

    Levitsky, V. G., Mukhin, A. M., Oshchepkov, D. Y., Zemlyanskaya, E. V. & Lashin, S. A., 11 Aug 2022, In: International Journal of Molecular Sciences. 23, 16, 8981.

    Research output: Contribution to journal › Article › peer-review

  53. QTL Analysis for Bread Wheat Seed Size, Shape and Color Characteristics Estimated by Digital Image Processing

    Arif, M. A. R., Komyshev, E. G., Genaev, M. A., Koval, V. S., Shmakov, N. A., Börner, A. & Afonnikov, D. A., Aug 2022, In: Plants. 11, 16, 2105.

    Research output: Contribution to journal › Article › peer-review

  54. Motif models proposing independent and interdependent impacts of nucleotides are related to high and low affinity transcription factor binding sites in Arabidopsis

    Tsukanov, A. V., Mironova, V. V. & Levitsky, V. G., 28 Jul 2022, In: Frontiers in Plant Science. 13, 938545.

    Research output: Contribution to journal › Article › peer-review

  55. BioUML—towards a universal research platform

    Колпаков, Ф., Акбердин, И. Р., Киселев, И., Колмыков, С. К., Кондрахин, Ю., Куляшов, М. А., Кутумова, Е., Пинтус, С. С., Рябова, А., Шарипов, Р. Н., Евшин, И., Жатченко, С. & Кель, А., 5 Jul 2022, In: Nucleic Acids Research. 50, W1, p. W124-W131 8 p.

    Research output: Contribution to journal › Article › peer-review

  56. Multicompartmental Mathematical Model of SARS-CoV-2 Distribution in Human Organs and Their Treatment

    Afonyushkin, V. N., Акбердин, И. Р., Kozlova, Y., Щукин, И. А., Mironova, T., Bobikova, A., Cherepushkina, V., Donchenko, N., Poletaeva, Y. E. & Колпаков, Ф., 1 Jun 2022, In: Mathematics. 10, 11, 1925.

    Research output: Contribution to journal › Article › peer-review

  57. Particle-Based Imaging Tools Revealing Water Flows in Maize Nodal Vascular Plexus

    Zubairova, U. S., Kravtsova, A. Y., Romashchenko, A. V., Pushkareva, A. A. & Doroshkov, A. V., 1 Jun 2022, In: Plants. 11, 12, 1533.

    Research output: Contribution to journal › Article › peer-review

  58. Modular Representation of Physiologically Based Pharmacokinetic Models: Nanoparticle Delivery to Solid Tumors in Mice as an Example

    Kutumova, E., Akberdin, I., Kiselev, I., Sharipov, R. & Kolpakov, F., 1 Apr 2022, In: Mathematics. 10, 7, 20 p., 1176.

    Research output: Contribution to journal › Article › peer-review

  59. Comparative analysis of alignment-free genome clustering and whole genome alignment-based phylogenomic relationship of coronaviruses

    Kirichenko, A. D., Poroshina, A. A., Sherbakov, D. Y., Sadovsky, M. G. & Krutovsky, K. V., Mar 2022, In: PLoS ONE. 17, 3, e0264640.

    Research output: Contribution to journal › Article › peer-review

  60. Isolation and transcriptome analysis of a biotechnologically promising Black Sea protist, Thraustochytrium aureum ssp. Strugatskii

    Konstantinov, D. K., Menzorov, A., Krivenko, O. & Doroshkov, A. V., Mar 2022, In: PeerJ. 10, e12737.

    Research output: Contribution to journal › Article › peer-review

  61. Classification of Fruit Flies by Gender in Images Using Smartphones and the YOLOv4-Tiny Neural Network

    Genaev, M. A., Komyshev, E. G., Shishkina, O. D., Adonyeva, N. V., Karpova, E. K., Gruntenko, N. E., Zakharenko, L. P., Koval, V. S. & Afonnikov, D. A., 1 Feb 2022, In: Mathematics. 10, 3, 295.

    Research output: Contribution to journal › Article › peer-review

  62. Salicylic Acid in Root Growth and Development

    Bagautdinova, Z. Z., Omelyanchuk, N., Tyapkin, A. V., Kovrizhnykh, V. V., Lavrekha, V. V. & Zemlyanskaya, E. V., 1 Feb 2022, In: International Journal of Molecular Sciences. 23, 4, 2228.

    Research output: Contribution to journal › Review article › peer-review

  63. Agent-Based Modeling of Autosomal Recessive Deafness 1A (DFNB1A) Prevalence with Regard to Intensity of Selection Pressure in Isolated Human Population

    Romanov, G. P., Smirnova, A. A., Zamyatin, V. I., Mukhin, A. M., Kazantsev, F. V., Pshennikova, V. G., Teryutin, F. M., Solovyev, A. V., Fedorova, S. A., Posukh, O. L., Lashin, S. A. & Barashkov, N. A., Feb 2022, In: Biology. 11, 2, 257.

    Research output: Contribution to journal › Article › peer-review

  64. The functional insight into the geneticsof cardiovascular disease: results from the post-GWAS study

    Bryzgalov, L. O., Korbolina, E. E., Damarov, I. S. & Merkulova, T., Feb 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 1, p. 65-73 9 p., 8.

    Research output: Contribution to journal › Article › peer-review

  65. ДНК-метабаркодинг бентосных водорослей и ассоциированных с ними эукариот оз. Байкал в условиях быстрых экологических изменений

    Bukin, Y. S., Kravtsova, L. S., Peretolchina, T. E., Fedotov, A. P., Tupikin, A. E., Kabilov, M. R., Sherbakov, D. Y. & Mincheva, E., Feb 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 1, p. 86-95 10 p., 10.

    Research output: Contribution to journal › Article › peer-review

  66. Abnormal mTOR Activity in Pediatric Autoimmune Neuropsychiatric and MIA-Associated Autism Spectrum Disorders

    Trifonova, E. A., Mustafin, Z. S., Lashin, S. A. & Kochetov, A. V., 16 Jan 2022, In: International Journal of Molecular Sciences. 23, 2, 967.

    Research output: Contribution to journal › Review article › peer-review

  67. Relationship between the characteristics of bread wheat grains, storage time and germination

    Afonnikov, D. A., Komyshev, E. G., Efimov, V. M., Genaev, M. A., Koval, V. S., Gierke, P. U. & Börner, A., 1 Jan 2022, In: Plants. 11, 1, 35.

    Research output: Contribution to journal › Article › peer-review

  68. ICBrainDB: An Integrated Database for Finding Associations between Genetic Factors and EEG Markers of Depressive Disorders

    Ivanov, R., Kazantsev, F., Zavarzin, E., Klimenko, A., Milakhina, N., Matushkin, Y. G., Savostyanov, A. & Lashin, S., Jan 2022, In: Journal of Personalized Medicine. 12, 1, 53.

    Research output: Contribution to journal › Article › peer-review

  69. Wheat yield estimation based on analysis of UAV images at low altitude

    Kozhekin, M., Genaev, M., Koval, V., Slobodchikov, A. & Afonnikov, D., 2022, In: BIO Web of Conferences. 47, p. 05006

    Research output: Contribution to journal › Article › peer-review

  70. 2021

  71. NLR genes related transcript sets in potato cultivars bearing genetic material of wild Mexican solanum species

    Kochetov, A. V., Afonnikov, D. A., Shmakov, N., Vasiliev, G. V., Antonova, O. Y., Shatskaya, N. V., Glagoleva, A. Y., Ibragimova, S. M., Khiutti, A., Afanasenko, O. S. & Gavrilenko, T. A., Dec 2021, In: Agronomy. 11, 12, 2426.

    Research output: Contribution to journal › Article › peer-review

  72. The mitochondrial genome of a freshwater pelagic amphipod Macrohectopus branickii is among the longest in Metazoa

    Romanova, E. V., Bukin, Y. S., Mikhailov, K. V., Logacheva, M. D., Aleoshin, V. V. & Sherbakov, D. Y., Dec 2021, In: Genes. 12, 12, 2030.

    Research output: Contribution to journal › Article › peer-review

  73. Mechanisms of stress response in the root stem cell niche

    Ubogoeva, E. V., Zemlyanskaya, E. V., Xu, J. & Mironova, V., 13 Oct 2021, In: Journal of Experimental Botany. 72, 19, p. 6746-6754 9 p.

    Research output: Contribution to journal › Review article › peer-review

  74. A modular mathematical model of exercise-induced changes in metabolism, signaling, and gene expression in human skeletal muscle

    Akberdin, I. R., Kiselev, I. N., Pintus, S. S., Sharipov, R. N., Vertyshev, A. Y., Vinogradova, O. L., Popov, D. V. & Kolpakov, F. A., 1 Oct 2021, In: International Journal of Molecular Sciences. 22, 19, 10353.

    Research output: Contribution to journal › Article › peer-review

  75. Leave or stay: Simulating motility and fitness of microorganisms in dynamic aquatic ecosystems

    Klimenko, A., Matushkin, Y., Kolchanov, N. & Lashin, S., Oct 2021, In: Biology. 10, 10, 1019.

    Research output: Contribution to journal › Article › peer-review

  76. Transcriptional regulation in plants: Using omics data to crack the cis-regulatory code

    Zemlyanskaya, E. V., Dolgikh, V. A., Levitsky, V. G. & Mironova, V., Oct 2021, In: Current Opinion in Plant Biology. 63, p. 102058 102058.

    Research output: Contribution to journal › Review article › peer-review

  77. Prioritization of biological processes based on the reconstruction and analysis of associative gene networks describing the response of plants to adverse environmental factors

    Demenkov, P. S., Oshchepkova, E. A., Ivanisenko, T. V. & Ivanisenko, V. A., Sept 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 5, p. 580-592 13 p., 13.

    Research output: Contribution to journal › Article › peer-review

  78. Комплексный анализ влияния аллельного полиморфизма 5-HTTLPR на поведенческие и нейрофизиологические показатели исполнительного контроля у людей из разных этнических групп в Сибири

    Savostyanov, A. N., Bazovkina, D. V., Lashin, S. A., Tamozhnikov, S. S., Saprygin, A. E., Astakhova, T. N., Kavai-Ool, U. N., Borisova, N. V. & Karpova, A. G., Sept 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 5, p. 593-602 10 p., 14.

    Research output: Contribution to journal › Article › peer-review

  79. Image-based wheat fungi diseases identification by deep learning

    Genaev, M. A., Skolotneva, E. S., Gultyaeva, E. I., Orlova, E. A., Bechtold, N. P. & Afonnikov, D. A., Aug 2021, In: Plants. 10, 8, 1500.

    Research output: Contribution to journal › Article › peer-review

  80. A Catalog of Human Genes Associated With Pathozoospermia and Functional Characteristics of These Genes

    Ignatieva, E. V., Osadchuk, A. V., Kleshchev, M. A., Bogomolov, A. G. & Osadchuk, L. V., 5 Jul 2021, In: Frontiers in Genetics. 12, 662770.

    Research output: Contribution to journal › Article › peer-review

  81. A panel of rsnps demonstrating allelic asymmetry in both chip-seq and rna-seq data and the search for their phenotypic outcomes through analysis of degs

    Korbolina, E. E., Bryzgalov, L. O., Ustrokhanova, D. Z., Postovalov, S. N., Poverin, D. V., Damarov, I. S. & Merkulova, T. I., 2 Jul 2021, In: International Journal of Molecular Sciences. 22, 14, 7240.

    Research output: Contribution to journal › Article › peer-review

  82. Experimental comparison of the in vivo efficacy of two novel anticancer therapies

    Ruzanova, V. S., Proskurina, A. S., Ritter, G. S., Efremov, Y. R., Nikolin, V. P., Popova, N. A., Naprimerov, V. A., Dolgova, E. V., Potter, E. A., Kirikovich, S. S., Levites, E. V., Mustafin, Z. S., Lashin, S. A., Burakova, E. A., Stetsenko, D. A., Ostanin, A. A., Chernykh, E. R. & Bogachev, S. S., Jul 2021, In: Anticancer research. 41, 7, p. 3371-3387 17 p.

    Research output: Contribution to journal › Article › peer-review

  83. Regulatory SPNs: Altered transcription factor binding sites implicated in complex traits and diseases

    Degtyareva, A. O., Antontseva, E. V. & Merkulova, T. I., 2 Jun 2021, In: International Journal of Molecular Sciences. 22, 12, 6454.

    Research output: Contribution to journal › Article › peer-review

  84. Genome-wide atlas of promoter expression reveals contribution of transcribed regulatory elements to genetic control of disuse-mediated atrophy of skeletal muscle

    Pintus, S. S., Akberdin, I. R., Yevshin, I., Makhnovskii, P., Tyapkina, O., Nigmetzyanov, I., Nurullin, L., Devyatiyarov, R., Shagimardanova, E., Popov, D., Kolpakov, F. A., Gusev, O. & Gazizova, G. R., Jun 2021, In: Biology. 10, 6, 557.

    Research output: Contribution to journal › Article › peer-review

  85. A Sight on Single-Cell Transcriptomics in Plants Through the Prism of Cell-Based Computational Modeling Approaches: Benefits and Challenges for Data Analysis

    Bobrovskikh, A., Doroshkov, A., Mazzoleni, S., Cartenì, F., Giannino, F. & Zubairova, U., 21 May 2021, In: Frontiers in Genetics. 12, p. 652974 652974.

    Research output: Contribution to journal › Review article › peer-review

  86. Do autism spectrum and autoimmune disorders share predisposition gene signature due to mtor signaling pathway controlling expression?

    Trifonova, E. A., Klimenko, A. I., Mustafin, Z. S., Lashin, S. A. & Kochetov, A. V., 16 May 2021, In: International Journal of Molecular Sciences. 22, 10, 5248.

    Research output: Contribution to journal › Article › peer-review

  87. Comparative transcriptome profiling of a resistant vs susceptible bread wheat (Triticum aestivum L.) cultivar in response to water deficit and cold stress

    Konstantinov, D. K., Zubairova, U. S., Ermakov, A. A. & Doroshkov, A. V., May 2021, In: PeerJ. 9, p. e11428 e11428.

    Research output: Contribution to journal › Article › peer-review

  88. Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures

    Shi, D., Jouannet, V., Agustí, J., Kaul, V., Levitsky, V., Sanchez, P., Mironova, V. V. & Greb, T., 17 Apr 2021, In: The Plant cell. 33, 2, p. 200-223 24 p.

    Research output: Contribution to journal › Article › peer-review

  89. Рибосомное профилирование как инструмент исследования трансляции у растений: основные итоги, проблемы и перспективы

    Afonnikov, D. A., Sinitsyna, O. I., Golubeva, T. S., Shmakov, N. A. & Kochetov, A. V., Mar 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 3, p. 251-259 9 p., 1.

    Research output: Contribution to journal › Article › peer-review

  90. Технологии поиска и исследования потенциально осциллирующих ферментативных систем

    Lakhova, T. N., Kazantsev, F. V., Lashin, S. A. & Matushkin, Y. G., Mar 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 3, p. 318-330 13 p., 9.

    Research output: Contribution to journal › Article › peer-review

  91. Геномная изменчивость в регуляторных районах генов, ассоциированная с заболеваниями человека: механизмы влияния на транскрипцию генов и полногеномные информационные ресурсы, обеспечивающие исследование этих механизмов

    Ignatieva, E. V. & Matrosova, E. A., Feb 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 18-29 12 p., 2.

    Research output: Contribution to journal › Article › peer-review

  92. Метод поиска структурной гетерогенности сайтов связывания транскрипционных факторов с использованием альтернативных de novo моделей на примере FOXA2

    Tsukanov, A. V., Levitsky, V. G. & Merkulova, T. I., Feb 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 7-17 11 p., 1.

    Research output: Contribution to journal › Article › peer-review

  93. Филостратиграфический анализ генных сетей заболеваний человека

    Mustafin, Z. S., Lashin, S. A. & Matushkin, Y. G., Jan 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 46-56 11 p., 5.

    Research output: Contribution to journal › Article › peer-review

  94. Hypoxia exerts oxidative stress and changes in expression of antioxidant enzyme genes in gills of Mytilus galloprovincialis (Lamarck, 1819)

    Andreyeva, A. Y., Gostyukhina, O. L., Kladchenko, E. S., Afonnikov, D. A., Rasskazov, D. A., Lantushenko, A. O. & Vodiasova, E. A., 2021, In: Marine Biology Research. 17, 4, p. 369-379 11 p.

    Research output: Contribution to journal › Article › peer-review

  95. The Web Platform for Storing Biotechnologically Significant Properties of Bacterial Strains

    Mukhin, A. M., Kazantsev, F. V., Klimenko, A. I., Lakhova, T. N., Demenkov, P. S. & Lashin, S. A., 2021, Parallel Computing Technologies - 16th International Conference, PaCT 2021, Proceedings. Malyshkin, V. (ed.). Springer Science and Business Media Deutschland GmbH, p. 445-450 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12942 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  96. Вироид веретеновидности клубней картофеля

    Kochetov, A. V., Pronozin, A. Y., Shatskaya, N. V., Afonnikov, D. A. & Afanasenko, O. S., 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 3, p. 269-275 7 p., 3.

    Research output: Contribution to journal › Article › peer-review

  97. Определение количественного содержания хлорофиллов в листьях по спектрам отражения алгоритмом случайного леса

    Urbanovich, E. A., Afonnikov, D. A. & Nikolaev, S. V., 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 64-70 7 p., 7.

    Research output: Contribution to journal › Article › peer-review

  98. 2020

  99. Nucleosome positioning around transcription start site correlates with gene expression only for active chromatin state in drosophila interphase chromosomes

    Levitsky, V. G., Zykova, T. Y., Moshkin, Y. M. & Zhimulev, I. F., 1 Dec 2020, In: International Journal of Molecular Sciences. 21, 23, p. 1-10 10 p., 9282.

    Research output: Contribution to journal › Article › peer-review

  100. A new approach to estimating the prevalence of hereditary hearing loss: An analysis of the distribution of sign language users based on census data in Russia

    Romanov, G. P., Pshennikova, V. G., Lashin, S. A., Solovyev, A. V., Teryutin, F. M., Cherdonova, A. M., Borisova, T. V., Sazonov, N. N., Khusnutdinova, E. K., Posukh, O. L., Fedorova, S. A. & Barashkov, N. A., Nov 2020, In: PLoS ONE. 15, 11 November, p. e0242219 e0242219.

    Research output: Contribution to journal › Article › peer-review

  101. Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis

    Freire-Rios, A., Tanaka, K., Crespo, I., Van der Wijk, E., Sizentsova, Y., Levitsky, V., Lindhoud, S., Fontana, M., Hohlbein, J., Roeland Boer, D., Mironova, V. & Weijers, D., 29 Sept 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 39, p. 24557-24566 10 p.

    Research output: Contribution to journal › Article › peer-review

  102. The phylogeny of class b flavoprotein monooxygenases and the origin of the yucca protein family

    Turnaev, I. I., Gunbin, K. V., Suslov, V. V., Akberdin, I. R., Kolchanov, N. A. & Afonnikov, D. A., 1 Sept 2020, In: Plants. 9, 9, p. 1-22 22 p., 1092.

    Research output: Contribution to journal › Article › peer-review

  103. Asymmetric conservation within pairs of co-occurred motifs mediates weak direct binding of transcription factors in chip-seq data

    Levitsky, V., Oshchepkov, D., Zemlyanskaya, E. & Merkulova, T., 21 Aug 2020, In: International Journal of Molecular Sciences. 21, 17, p. 1-22 22 p., 6023.

    Research output: Contribution to journal › Article › peer-review

  104. The Effects of Chronic Stress on Brain Myelination in Humans and in Various Rodent Models

    Antontseva, E., Bondar, N., Reshetnikov, V. & Merkulova, T., 10 Aug 2020, In: Neuroscience. 441, p. 226-238 13 p.

    Research output: Contribution to journal › Review article › peer-review

  105. Subcellular compartmentalization of the plant antioxidant system: an integrated overview

    Bobrovskikh, A., Zubairova, U., Kolodkin, A. & Doroshkov, A., 16 Jul 2020, In: PeerJ. 8, p. e9451 27 p., e9451.

    Research output: Contribution to journal › Review article › peer-review

  106. A genome-scale metabolic model of 2,3-butanediol production by thermophilic bacteria geobacillus icigianus

    Kulyashov, M., Peltek, S. E. & Akberdin, I. R., 1 Jul 2020, In: Microorganisms. 8, 7, p. 1-13 13 p., 1002.

    Research output: Contribution to journal › Article › peer-review

  107. Analysis of color and texture characteristics of cereals on digital images

    Komyshev, E. G., Genaev, M. A. & Afonnikov, D. A., Jul 2020, In: Вавиловский журнал генетики и селекции. 24, 4, p. 340-347 8 p.

    Research output: Contribution to journal › Review article › peer-review

  108. Application of neural networks to image recognition of wheat rust diseases

    Genaev, M., Ekaterina, S. & Afonnikov, D., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 40-42 3 p. 9214703. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  109. GPU Based Composite Elements Discovery in Large DNADatasets

    Vishnevsky, O., Bocharnikov, A. & Kolchanov, N., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 135-138 4 p. 9214777. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  110. Mathematical and Numerical Models of the Central Regulatory Circuit of the Morphogenesis System of Drosophila

    Bukharina, T. A., Akinshin, A. A., Golubyatnikov, V. P. & Furman, D. P., 1 May 2020, In: Journal of Applied and Industrial Mathematics. 14, 2, p. 249-255 7 p.

    Research output: Contribution to journal › Article › peer-review

  111. rs2072580T>A Polymorphism in the Overlapping Promoter Regions of the SART3 and ISCU Genes Associated with the Risk of Breast Cancer

    Degtyareva, A. O., Leberfarb, E. Y., Efimova, E. G., Brusentsov, I. I., Usova, A. V., Lushnikova, E. L. & Merkulova, T. I., 1 May 2020, In: Bulletin of Experimental Biology and Medicine. 169, 1, p. 81-84 4 p.

    Research output: Contribution to journal › Article › peer-review

  112. Specification and regulation of vascular tissue identity in the Arabidopsis embryo

    Smit, M. E., Llavata-Peris, C. I., Roosjen, M., van Beijnum, H., Novikova, D., Levitsky, V., Sevilem, I., Roszak, P., Slane, D., Jürgens, G., Mironova, V., Brady, S. M. & Weijers, D., 20 Apr 2020, In: Development (Cambridge). 147, 8, 15 p., dev186130.

    Research output: Contribution to journal › Article › peer-review

  113. Fold-change-specific enrichment analysis (FSEA): Quantification of transcriptional response magnitude for functional gene groups

    Wiebe, D. S., Omelyanchuk, N. A., Mukhin, A. M., Grosse, I., Lashin, S. A., Zemlyanskaya, E. V. & Mironova, V. V., 17 Apr 2020, In: Genes. 11, 4, 14 p., 434.

    Research output: Contribution to journal › Article › peer-review

  114. Genes containing long introns occupy series of bands and interbands in drosophila melanogaster polytene chromosomes

    Khoroshko, V. A., Pokholkova, G. V., Levitsky, V. G., Zykova, T. Y., Antonenko, O. V., Belyaeva, E. S. & Zhimulev, I. F., Apr 2020, In: Genes. 11, 4, 32 p., 417.

    Research output: Contribution to journal › Article › peer-review

  115. Faint gray bands in Drosophila melanogaster polytene chromosomes are formed by coding sequences of housekeeping genes

    Demakova, O. V., Demakov, S. A., Boldyreva, L. V., Zykova, T. Y., Levitsky, V. G., Semeshin, V. F., Pokholkova, G. V., Sidorenko, D. S., Goncharov, F. P., Belyaeva, E. S. & Zhimulev, I. F., 1 Mar 2020, In: Chromosoma. 129, 1, p. 25-44 20 p.

    Research output: Contribution to journal › Article › peer-review

  116. Использование гиперспектральной камеры Specim IQ для анализа растений

    Alt, V. V., Gurova, T. A., Elkin, O. V., Klimenko, D. N., Maximov, L. V., Pestunov, I. A., Dubrovskaya, O. A., Genaev, M. A., Erst, T. V., Genaev, K. A., Komyshev, E. G., Khlestkin, V. K. & Afonnikov, D. A., 1 Mar 2020, In: Вавиловский журнал генетики и селекции. 24, 3, p. 259-266 8 p., 6.

    Research output: Contribution to journal › Article › peer-review

  117. Candidate snp markers of atherogenesis significantly shifting the affinity of TATA-binding protein for human gene promoters show stabilizing natural selection as a sum of neutral drift accelerating atherogenesis and directional natural selection slowing it

    Ponomarenko, M., Rasskazov, D., Chadaeva, I., Sharypova, E., Drachkova, I., Oshchepkov, D., Ponomarenko, P., Savinkova, L., Oshchepkova, E., Nazarenko, M. & Kolchanov, N., 5 Feb 2020, In: International Journal of Molecular Sciences. 21, 3, 41 p., 1045.

    Research output: Contribution to journal › Article › peer-review

  118. Computer Simulation of the Evolution of Microbial Population: Overcoming Local Minima When Reaching a Peak on the Fitness Landscape

    Lashin, S. A., Mustafin, Z. S., Klimenko, A. I., Afonnikov, D. A. & Matushkin, Y. G., 1 Feb 2020, In: Russian Journal of Genetics. 56, 2, p. 242-252 11 p.

    Research output: Contribution to journal › Article › peer-review

  119. Identification of Antimicrobial Peptides from Novel Lactobacillus fermentum Strain

    Pavlova, A. S., Ozhegov, G. D., Arapidi, G. P., Butenko, I. O., Fomin, E. S., Alemasov, N. A., Afonnikov, D. A., Yarullina, D. R., Ivanov, V. T., Govorun, V. M. & Kayumov, A. R., 1 Feb 2020, In: Protein Journal. 39, 1, p. 73-84 12 p.

    Research output: Contribution to journal › Article › peer-review

  120. The Effect of Meditation on Comprehension of Statements About One-Self and Others: A Pilot ERP and Behavioral Study

    Savostyanov, A., Tamozhnikov, S., Bocharov, A., Saprygin, A., Matushkin, Y., Lashin, S., Kolpakova, G., Sudobin, K. & Knyazev, G., 9 Jan 2020, In: Frontiers in Human Neuroscience. 13, 12 p., 437.

    Research output: Contribution to journal › Article › peer-review

  121. A mathematical model linking Ca2+-dependent signaling pathway and gene expression regulation in Human Skeletal Muscle

    Akberdin, I. R., Vertyshev, A. Y., Pintus, S. S., Popov, D. V. & Kolpakov, F. A., 1 Jan 2020, In: Mathematical Biology and Bioinformatics. 15, 1, p. 20-39 20 p.

    Research output: Contribution to journal › Article › peer-review

  122. Potential regulatory SNPs in the ATXN7L3B and KRT15 genes are associated with gender-specific colorectal cancer risk

    Leberfarb, E. Y., Degtyareva, A. O., Brusentsov, I. I., Maximov, V. N., Voevoda, M. I., Autenshlus, A. I., Morozov, D. V., Sokolov, A. V. & Merkulova, T. I., Jan 2020, In: Personalized Medicine. 17, 1, p. 43-54 12 p.

    Research output: Contribution to journal › Article › peer-review

  123. Rdbms And Nosql Based Hybrid Technology for Transcriptome Data Structuring and Processing

    Mukhin, A. M., Genaev, M. A., Rasskazov, D. A., Lashin, S. A. & Afonnikov, D. A., 2020, In: Mathematical Biology and Bioinformatics. 15, 2, p. 455-470 16 p.

    Research output: Contribution to journal › Article › peer-review

  124. 2019

  125. The mTOR signaling pathway activity and vitamin d availability control the expression of most autism predisposition genes

    Trifonova, E. A., Klimenko, A. I., Mustafin, Z. S., Lashin, S. A. & Kochetov, A. V., 15 Dec 2019, In: International Journal of Molecular Sciences. 20, 24, 14 p., 6332.

    Research output: Contribution to journal › Article › peer-review

  126. A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package

    Levitsky, V., Zemlyanskaya, E., Oshchepkov, D., Podkolodnaya, O., Ignatieva, E., Grosse, I., Mironova, V. & Merkulova, T., 2 Dec 2019, In: Nucleic Acids Research. 47, 21, p. e139 14 p.

    Research output: Contribution to journal › Article › peer-review

  127. Stress-induced changes in the expression of antioxidant system genes for rice (Oryza sativa L.) and bread wheat (Triticum aestivum L.)

    Ermakov, A., Bobrovskikh, A., Zubairova, U., Konstantinov, D. & Doroshkov, A., 29 Nov 2019, In: PeerJ. 7, 11, 28 p., e7791.

    Research output: Contribution to journal › Article › peer-review

  128. Phylostratigraphic analysis shows the earliest origination of the abiotic stress associated genes in a. Thaliana

    Mustafin, Z. S., Zamyatin, V. I., Konstantinov, D. K., Doroshkov, A. V., Lashin, S. A. & Afonnikov, D. A., 22 Nov 2019, In: Genes. 10, 12, 27 p., 963.

    Research output: Contribution to journal › Article › peer-review

  129. Behavior and Depression Gene Networks Reconstruction and Analysis

    Ivanov, R. A., Zamyatin, V. I., Klimenko, A. I., Astakhova, T. N., Matushkin, Y. G., Savostyanov, A. N. & Lashin, S. A., Oct 2019, SIBIRCON 2019 - International Multi-Conference on Engineering, Computer and Information Sciences, Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 361-365 5 p. 8958072. (SIBIRCON 2019 - International Multi-Conference on Engineering, Computer and Information Sciences, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  130. Reconstruction and Analysis of Gene Networks of Human Neurotransmitter Systems Reveal Genes with Contentious Manifestation for Anxiety, Depression, and Intellectual Disabilities

    Ivanov, R., Zamyatin, V., Klimenko, A., Matushkin, Y., Savostyanov, A. & Lashin, S., 11 Sept 2019, In: Genes. 10, 9, 14 p., 699.

    Research output: Contribution to journal › Article › peer-review

  131. Candidate SNP Markers of Atherosclerosis That May Significantly Change the Affinity of the TATA-Binding Protein for the Human Gene Promoters

    Ponomarenko, M. P., Rasskazov, D. A., Chadaeva, I. V., Sharypova, E. B., Drachkova, I. A., Ponomarenko, P. M., Oshchepkova, E. A., Savinkova, L. K. & Kolchanov, N. A., 1 Sept 2019, In: Russian Journal of Genetics. 55, 9, p. 1137-1151 15 p.

    Research output: Contribution to journal › Article › peer-review

  132. Shaping Ethylene Response: The Role of EIN3/EIL1 Transcription Factors

    Dolgikh, V. A., Pukhovaya, E. M. & Zemlyanskaya, E. V., 26 Aug 2019, In: Frontiers in Plant Science. 10, p. 1030 9 p., 1030.

    Research output: Contribution to journal › Review article › peer-review

  133. Candidate SNP-markers of rheumatoid arthritis that can significantly alter the affinity of the TATA-binding protein for human gene promoters

    Chadaeva, I. V., Rasskazov, D. A., Sharypova, E. B., Drachkova, I. A., Oshchepkova, E. A., Savinkova, L. K., Ponomarenko, P. M., Ponomarenko, M. P., Kolchanov, N. A. & Kozlov, V. A., 1 Aug 2019, In: Вавиловский журнал генетики и селекции. 23, 8, p. 1047-1058 12 p.

    Research output: Contribution to journal › Article › peer-review

  134. Single nucleotide polymorphism rs110861313 in the intergenic region of chromosome 23 is associated with the development of leukosis in the Russian Black Pied cattle

    Aitnazarov, R. B., Ignatieva, E. V., Agarkova, T. A., Dvoeglazov, N. G., Osipova, N. A., Khramtsov, V. V. & Yudin, N. S., 1 Aug 2019, In: Вавиловский журнал генетики и селекции. 23, 8, p. 999-1005 7 p.

    Research output: Contribution to journal › Article › peer-review

  135. Morphometry of the wheat spike by analyzing 2D images

    Genaev, M. A., Komyshev, E. G., Smirnov, N. V., Kruchinina, Y. V., Goncharov, N. P. & Afonnikov, D. A., 17 Jul 2019, In: Agronomy. 9, 7, 390.

    Research output: Contribution to journal › Article › peer-review

  136. BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data

    Kolpakov, F., Akberdin, I., Kashapov, T., Kiselev, L., Kolmykov, S., Kondrakhin, Y., Kutumova, E., Mandrik, N., Pintus, S., Ryabova, A., Sharipov, R., Yevshin, I. & Kel, A., 1 Jul 2019, In: Nucleic Acids Research. 47, W1, p. W225-W233 9 p.

    Research output: Contribution to journal › Article › peer-review

  137. Insight into genetic and social aspects of modern communities of deaf people in Siberia for forecasting the prevalence of hereditary deafness

    Posukh, O. L., Bady-Khoo, M. S., Romanov, G. P., Barashkov, N. A., Smirnova, A. A., Zytsar, M. V., Maslova, E. A., Danilchenko, V. Y., Posukh, O. V. & Lashin, S. A., Jul 2019, In: European journal of human genetics. 27, p. 1038-1038 1 p.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  138. Exome-wide search and functional annotation of genes associated in patients with severe tick-borne encephalitis in a Russian population

    Ignatieva, E. V., Yurchenko, A. A., Voevoda, M. I. & Yudin, N. S., 24 May 2019, In: BMC Medical Genomics. 12, Suppl 3, p. 61 23 p., 61.

    Research output: Contribution to journal › Article › peer-review

  139. New insights from Opisthorchis felineus genome: update on genomics of the epidemiologically important liver flukes

    Ershov, N. I., Mordvinov, V. A., Prokhortchouk, E. B., Pakharukova, M. Y., Gunbin, K. V., Ustyantsev, K., Genaev, M. A., Blinov, A. G., Mazur, A., Boulygina, E., Tsygankova, S., Khrameeva, E., Chekanov, N., Fan, G., Xiao, A., Zhang, H., Xu, X., Yang, H., Solovyev, V., Lee, S. M. Y., & 3 othersLiu, X., Afonnikov, D. A. & Skryabin, K. G., 22 May 2019, In: BMC Genomics. 20, 1, p. 399 22 p., 399.

    Research output: Contribution to journal › Article › peer-review

  140. Genomics research at Bioinformatics of Genome Regulation and Structure\ Systems Biology (BGRS\SB) conferences in Novosibirsk

    Orlov, Y. L., Kochetov, A. V., Li, G. & Kolchanov, N. A., 8 May 2019, In: BMC Genomics. 20, Suppl 3, 5 p., 322.

    Research output: Contribution to journal › Article › peer-review

  141. Spatial heterogeneity promotes antagonistic evolutionary scenarios in microbial community explained by ecological stratification: a simulation study

    Klimenko, A. I., Matushkin, Y. G., Kolchanov, N. A. & Lashin, S. A., 1 May 2019, In: Ecological Modelling. 399, p. 66-76 11 p.

    Research output: Contribution to journal › Article › peer-review

  142. Genome analysis identifies the mutant genes for common industrial Silverblue and Hedlund white coat colours in American mink

    Manakhov, A. D., Andreeva, T. V., Trapezov, O. V., Kolchanov, N. A. & Rogaev, E. I., 14 Mar 2019, In: Scientific Reports. 9, 1, p. 4581 8 p., 4581.

    Research output: Contribution to journal › Article › peer-review

  143. LSM-W 2: Laser scanning microscopy worker for wheat leaf surface morphology

    Zubairova, U. S., Verman, P. Y., Oshchepkova, P. A., Elsukova, A. S. & Doroshkov, A. V., 5 Mar 2019, In: BMC Systems Biology. 13, Suppl 1, p. 22 12 p., 22.

    Research output: Contribution to journal › Article › peer-review

  144. Architecture of Promoters of House-Keeping Genes in Polytene Chromosome Interbands of Drosophila melanogaster

    Zykova, T. Y., Levitsky, V. G. & Zhimulev, I. F., 1 Mar 2019, In: Doklady Biochemistry and Biophysics. 485, 1, p. 95-100 6 p.

    Research output: Contribution to journal › Article › peer-review

  145. Evolutionary biology and biodiversity research at BGRS-2018

    Orlov, Y. L., Baranova, A. V., Kolchanov, N. A. & Moroz, L. L., 26 Feb 2019, In: BMC Evolutionary Biology. 19, Suppl 1, p. 43 3 p., 43.

    Research output: Contribution to journal › Article › peer-review

  146. Natural selection equally supports the human tendencies in subordination and domination: A Genome-wide study with in silico confirmation and in vivo validation in mice

    Chadaeva, I., Ponomarenko, P., Rasskazov, D., Sharypova, E., Kashina, E., Kleshchev, M., Ponomarenko, M., Naumenko, V., Savinkova, L., Kolchanov, N., Osadchuk, L. & Osadchuk, A., 20 Feb 2019, In: Frontiers in Genetics. 10, FEB, 16 p., 73.

    Research output: Contribution to journal › Article › peer-review

  147. The evolution of gene regulatory networks controlling Arabidopsis thaliana L. trichome development

    Doroshkov, A. V., Konstantinov, D. K., Afonnikov, D. A. & Gunbin, K. V., 15 Feb 2019, In: BMC Plant Biology. 19, Suppl 1, 15 p., 53.

    Research output: Contribution to journal › Article › peer-review

  148. MIGREW: Database on molecular identification of genes for resistance in wheat

    Kazantsev, F. V., Skolotneva, E. S., Kelbin, V. N., Salina, E. A. & Lashin, S. A., 5 Feb 2019, In: BMC Bioinformatics. 20, Suppl 1, 8 p., 36.

    Research output: Contribution to journal › Article › peer-review

  149. A modular visual model of energy metabolism in human skeletal muscle

    Kiselev, I. N., Akberdin, I. R., Vertyshev, A. Y., D.V., P. & Kolpakov, F. A., 1 Jan 2019, In: Mathematical Biology and Bioinformatics. 14, 2, p. 373-392 20 p.

    Research output: Contribution to journal › Article › peer-review

  150. A system approach to the modeling of fungal infections of the wheat leaf

    Nikolaev, S. V., Zubairova, U. S., Skolotneva, E. S., Orlova, E. A. & Afonnikov, D. A., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 1, p. 100-109 10 p.

    Research output: Contribution to journal › Article › peer-review

  151. Effect of neonatal dexamethasone treatment on cognitive abilities of adult male mice and gene expression in the hypothalamus

    Bondar, N. P., Reshetnikov, V. V., Burdeeva, K. V. & Merkulova, T. I., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 4, p. 456-464 9 p.

    Research output: Contribution to journal › Article › peer-review

  152. Image-based analysis of quantitative morphological characteristics of wild potato tubers using the desktop application SeedСounter

    Ivanova, K. A., Komyshev, E. G., Genaev, M. A., Egorova, A. A., Koloshina, K. A., Chalaya, N. A., Afonnikov, D. A., Kochetov, A. V., Rogozina, E. V. & Gerasimova, S. V., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 5, p. 519-526 8 p.

    Research output: Contribution to journal › Article › peer-review

  153. Progress in plant genome sequencing: Research directions

    Bragina, M. K., Afonnikov, D. A. & Salina, E. A., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 1, p. 38-48 11 p.

    Research output: Contribution to journal › Article › peer-review

  154. Web-Based Computational Tools for the Prediction and Analysis of Posttranslational Modifications of Proteins

    Ivanisenko, V. A., Ivanisenko, T. V., Saik, O. V., Demenkov, P. S., Afonnikov, D. A. & Kolchanov, N. A., 1 Jan 2019, Methods in Molecular Biology. Humana Press Inc., Vol. 1934. p. 1-20 20 p. (Methods in Molecular Biology; vol. 1934).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  155. 2018

  156. Deciphering auxin-ethylene crosstalk at a systems level

    Zemlyanskaya, E. V., Omelyanchuk, N. A., Ubogoeva, E. V. & Mironova, V. V., 14 Dec 2018, In: International Journal of Molecular Sciences. 19, 12, 15 p., 4060.

    Research output: Contribution to journal › Review article › peer-review

  157. Regulatory SNPs and their widespread effects on the transcriptome

    Merkulov, V. M., Leberfarb, E. Y. & Merkulova, T. I., 1 Dec 2018, In: Journal of Biosciences. 43, 5, p. 1069-1075 7 p.

    Research output: Contribution to journal › Review article › peer-review

  158. Rare Earth Elements alter redox balance in methylomicrobium alcaliphilum 20ZR

    Akberdin, I. R., Collins, D. A., Hamilton, R., Oshchepkov, D. Y., Shukla, A. K., Nicora, C. D., Nakayasu, E. S., Adkins, J. N. & Kalyuzhnaya, M. G., 27 Nov 2018, In: Frontiers in Microbiology. 9, NOV, p. 2735 12 p., 2735.

    Research output: Contribution to journal › Article › peer-review

  159. Genetic Organization of Open Chromatin Domains Situated in Polytene Chromosome Interbands in Drosophila

    Zykova, T. Y., Popova, O. O., Khoroshko, V. A., Levitsky, V. G., Lavrov, S. A. & Zhimulev, I. F., 1 Nov 2018, In: Doklady Biochemistry and Biophysics. 483, 1, p. 297-301 5 p.

    Research output: Contribution to journal › Article › peer-review

  160. Residue coevolution reveals functionally important intramolecular interactions in formamidopyrimidine-DNA glycosylase

    Endutkin, A. V., Koptelov, S. S., Popov, A. V., Torgasheva, N. A., Lomzov, A. A., Tsygankova, A. R., Skiba, T. V., Afonnikov, D. A. & Zharkov, D. O., 1 Sept 2018, In: DNA Repair. 69, p. 24-33 10 p.

    Research output: Contribution to journal › Article › peer-review

  161. Novel approach to functional SNPs discovery from genome-wide data reveals promising variants for colon cancer risk

    Korbolina, E. E., Brusentsov, I. I., Bryzgalov, L. O., Leberfarb, E. Y., Degtyareva, A. O. & Merkulova, T. I., 1 Jun 2018, In: Human Mutation. 39, 6, p. 851-859 9 p.

    Research output: Contribution to journal › Article › peer-review

  162. A matrix metalloproteinase 9 (MMP9) gene single nucleotide polymorphism is associated with predisposition to tick-borne encephalitis virus-induced severe central nervous system disease

    Barkhash, A. V., Yurchenko, A. A., Yudin, N. S., Ignatieva, E. V., Kozlova, I. V., Borishchuk, I. A., Pozdnyakova, L. L., Voevoda, M. I. & Romaschenko, A. G., 1 May 2018, In: Ticks and Tick-borne Diseases. 9, 4, p. 763-767 5 p.

    Research output: Contribution to journal › Article › peer-review

  163. Marital Structure, Genetic Fitness, and the GJB2 Gene Mutations among Deaf People in Yakutia (Eastern Siberia, Russia)

    Romanov, G. P., Barashkov, N. A., Teryutin, F. M., Lashin, S. A., Solovyev, A. V., Pshennikova, V. G., Bondar, A. A., Morozov, I. V., Sazonov, N. N., Tomsky, M. I., Dzhemileva, L. U., Khusnutdinova, E. K., Posukh, O. L. & Fedorova, S. A., 1 May 2018, In: Russian Journal of Genetics. 54, 5, p. 554-561 8 p.

    Research output: Contribution to journal › Article › peer-review

  164. Human Genetic Predisposition to Diseases Caused by Viruses from Flaviviridae Family

    Yudin, N. S., Barkhash, A. V., Maksimov, V. N., Ignatieva, E. V. & Romaschenko, A. G., 27 Apr 2018, In: Molekuliarnaia biologiia. 52, 2, p. 190-209 20 p.

    Research output: Contribution to journal › Review article › peer-review

  165. Haplotype analysis of APOE intragenic SNPs

    Babenko, V. N., Afonnikov, D. A., Ignatieva, E. V., Klimov, A. V., Gusev, F. E. & Rogaev, E. I., 19 Apr 2018, In: BMC Neuroscience. 19, Suppl 1, p. 16 12 p., 16.

    Research output: Contribution to journal › Article › peer-review

  166. Novel functional variants at the GWAS-implicated loci might confer risk to major depressive disorder, bipolar affective disorder and schizophrenia

    Bryzgalov, L. O., Korbolina, E. E., Brusentsov, I. I., Leberfarb, E. Y., Bondar, N. P. & Merkulova, T. I., 19 Apr 2018, In: BMC Neuroscience. 19, Suppl 1, p. 22 16 p., 22.

    Research output: Contribution to journal › Article › peer-review

  167. Molecular Adaptations to Social Defeat Stress and Induced Depression in Mice

    Bondar, N., Bryzgalov, L., Ershov, N., Gusev, F., Reshetnikov, V., Avgustinovich, D., Tenditnik, M., Rogaev, E. & Merkulova, T., 1 Apr 2018, In: Molecular Neurobiology. 55, 4, p. 3394-3407 14 p.

    Research output: Contribution to journal › Article › peer-review

  168. Polytene chromosomes – A portrait of functional organization of drosophila genome

    Zykova, T. Y., Levitsky, V. G., Belyaeva, E. S. & Zhimulev, I. F., Apr 2018, In: Current Genomics. 19, 3, p. 179-191 13 p.

    Research output: Contribution to journal › Review article › peer-review

  169. Pluripotency gene network dynamics: System views from parametric analysis

    Akberdin, I. R., Omelyanchuk, N. A., Fadeev, S. I., Leskova, N. E., Oschepkova, E. A., Kazantsev, F. V., Matushkin, Y. G., Afonnikov, D. A. & Kolchanov, N. A., 29 Mar 2018, In: PLoS ONE. 13, 3, p. e0194464 24 p., 0194464.

    Research output: Contribution to journal › Article › peer-review

  170. Correction: Methane utilization in Methylomicrobium alcaliphilum 20ZR: A systems approach (Scientific Reports (2017) DOI: 10.1038/s41598-018-20574-z): a systems approach (vol 8, 2017)

    Akberdin, I. R., Thompson, M., Hamilton, R., Desai, N., Alexander, D., Henard, C. A., Guarnieri, M. T. & Kalyuzhnaya, M. G., 14 Mar 2018, In: Scientific Reports. 8, 1, p. 4753 1 p., 4753.

    Research output: Contribution to journal › Comment/debate › peer-review

  171. Human Genetic Predisposition to Diseases Caused by Viruses from Flaviviridae Family

    Yudin, N. S., Barkhash, A. V., Maksimov, V. N., Ignatieva, E. V. & Romaschenko, A. G., 1 Mar 2018, In: Molecular Biology. 52, 2, p. 165-181 17 p.

    Research output: Contribution to journal › Review article › peer-review

  172. Candidate SNP markers of reproductive potential are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters

    Chadaeva, I. V., Ponomarenko, P. M., Rasskazov, D. A., Sharypova, E. B., Kashina, E. V., Zhechev, D. A., Drachkova, I. A., Arkova, O. V., Savinkova, L. K., Ponomarenko, M. P., Kolchanov, N. A., Osadchuk, L. V. & Osadchuk, A. V., 9 Feb 2018, In: BMC Genomics. 19, Suppl 3, p. 0 23 p., 0.

    Research output: Contribution to journal › Article › peer-review

  173. Consequences of early life stress on genomic landscape of H3K4me3 in prefrontal cortex of adult mice

    Ershov, N. I., Bondar, N. P., Lepeshko, A. A., Reshetnikov, V. V., Ryabushkina, J. A. & Merkulova, T. I., 9 Feb 2018, In: BMC Genomics. 19, Suppl 3, p. 93 11 p., 93.

    Research output: Contribution to journal › Article › peer-review

  174. Methane utilization in Methylomicrobium alcaliphilum 20ZR: A systems approach

    Akberdin, I. R., Thompson, M., Hamilton, R., Desai, N., Alexander, D., Henard, C. A., Guarnieri, M. T. & Kalyuzhnaya, M. G., 6 Feb 2018, In: Scientific Reports. 8, 1, p. 2512 13 p., 2512.

    Research output: Contribution to journal › Article › peer-review

  175. Argo_CUDA: Exhaustive GPU based approach for motif discovery in large DNA datasets

    Vishnevsky, O. V., Bocharnikov, A. V. & Kolchanov, N. A., 1 Feb 2018, In: Journal of Bioinformatics and Computational Biology. 16, 1, 23 p., 1740012.

    Research output: Contribution to journal › Article › peer-review

  176. MAMMOTh: A new database for curated mathematical models of biomolecular systems

    Kazantsev, F., Akberdin, I., Lashin, S., Ree, N., Timonov, V., Ratushny, A., Khlebodarova, T. & Likhoshvai, V., 1 Feb 2018, In: Journal of Bioinformatics and Computational Biology. 16, 1, 16 p., 1740010.

    Research output: Contribution to journal › Article › peer-review

  177. Diversity of cis-regulatory elements associated with auxin response in Arabidopsis thaliana

    Cherenkov, P., Novikova, D., Omelyanchuk, N., Levitsky, V., Grosse, I., Weijers, D. & Mironova, V., 4 Jan 2018, In: Journal of Experimental Botany. 69, 2, p. 329-339 11 p.

    Research output: Contribution to journal › Article › peer-review

  178. High temperature and pressure influence the interdomain orientation of Nip7 proteins from P. abyssi and P. furiosus: MD simulations

    Medvedev, K. E., Kolchanov, N. A. & Afonnikov, D. A., 2 Jan 2018, In: Journal of Biomolecular Structure and Dynamics. 36, 1, p. 68-82 15 p.

    Research output: Contribution to journal › Article › peer-review

  179. An experimental study of the effect of rare polymorphisms of human HBB, HBD and F9 promoter TATA boxes on the kinetics of interaction with the TATA-binding protein

    Sharypova, E. B., Drachkova, I. A., Kashina, E. V., Rasskazov, D. A., Ponomarenko, M. P., Ponomarenko, M. P., Kolchanov, N. A. & Savinkova, L. K., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 145-152 8 p.

    Research output: Contribution to journal › Article › peer-review

  180. An integrated information system on bioresource collections of the FASO of Russia

    Lashin, S. A., Afonnikov, D. A., Genaev, M. A., Kazantsev, F. V., Komyshev, E. G., Oschepkova, E. A., Petrov, A. V., Rasskazov, D. A., Smirnova, A. A. & Kolchanov, N. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 3, p. 386-393 8 p.

    Research output: Contribution to journal › Article › peer-review

  181. Informational resources on potato germplasm collections

    Afonnikov, D. A., Totsky, I. V. & Stasevski, Z., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 115-121 7 p.

    Research output: Contribution to journal › Review article › peer-review

  182. Information system on microbial collections as a part of bioresource collections portal for Russia’s FASO organizations: A working protocol

    Kazantsev, F. V., Smirnova, A. A., Rozanov, A. S., Uvarova, Y. E., Afonnikov, D. A., Peltek, S. E. & Lashin, S. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 2, p. 279-284 6 p.

    Research output: Contribution to journal › Article › peer-review

  183. Leaf hairiness in potato Solanum tuberosum: Morphology, function and methods of analysis

    Doroshkov, A. V. & Afonnikov, D. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 46-53 8 p.

    Research output: Contribution to journal › Review article › peer-review

  184. Prioritization of genes associated with the pathogenesis of leukosis in cattle

    Yudin, N. S., Podkolodnyy, N. L., Agarkova, T. A. & Ignatieva, E. V., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 8, p. 1063-1069 7 p.

    Research output: Contribution to journal › Article › peer-review

  185. SpikeDroidDB: An information system for annotation of morphometric characteristics of wheat spike

    Genaev, M. A., Komyshev, E. G., Hao, F., Koval, V. S., Goncharov, N. P. & Afonnikov, D. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 132-140 9 p.

    Research output: Contribution to journal › Article › peer-review

  186. The bristle pattern development in Drosophila melanogaster: The prepattern and achaete-scute genes

    Furman, D. P. & Bukharina, T. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 8, p. 1046-1054 9 p.

    Research output: Contribution to journal › Article › peer-review

  187. The impact of early-life stress on the expression of HPA-associated genes in the adult murine brain

    Reshetnikov, V. V., Studenikina, A. A., Ryabushkina, J. A., Merkulova, T. I. & Bondar, N. P., 1 Jan 2018, In: Behaviour. 155, 2-3, p. 181-203 23 p.

    Research output: Contribution to journal › Article › peer-review

  188. Using the methods of systems biology for predicting perspective target genes to select C3 and C4 cereals for oxidative stress resistance

    Doroshkov, A. V. & Bobrovskikh, A. V., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 122-131 10 p.

    Research output: Contribution to journal › Article › peer-review

  189. Wheat leaf epidermal pattern as a model for studying the influence of stress conditions on morphogenesis

    Zubairova, U. S. & Doroshkov, A. V., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 7, p. 837-844 8 p.

    Research output: Contribution to journal › Article › peer-review

  190. 2017

  191. A compendium and functional characterization of mammalian genes involved in adaptation to Arctic or Antarctic environments

    Yudin, N. S., Larkin, D. M. & Ignatieva, E. V., 28 Dec 2017, In: BMC Genetics. 18, Suppl 1, p. 111 11 p., 111.

    Research output: Contribution to journal › Article › peer-review

  192. A database of human genes and a gene network involved in response to tick-borne encephalitis virus infection

    Ignatieva, E. V., Igoshin, A. V. & Yudin, N. S., 28 Dec 2017, In: BMC Evolutionary Biology. 17, Suppl 2, p. 259 14 p., 259.

    Research output: Contribution to journal › Article › peer-review

  193. Metabolic pathways and genes identified by RNA-seq analysis of barley near-isogenic lines differing by allelic state of the Black lemma and pericarp (Blp) gene

    Glagoleva, A. Y., Shmakov, N. A., Shoeva, O. Y., Vasiliev, G. V., Shatskaya, N. V., Börner, A., Afonnikov, D. A. & Khlestkina, E. K., 14 Nov 2017, In: BMC Plant Biology. 17, Suppl 1, p. 182 9 p., 182.

    Research output: Contribution to journal › Article › peer-review

  194. Achievements and prospects of applying high-throughput sequencing techniques to potato genetics and breeding

    Bykova, I. V., Shmakov, N. A., Afonnikov, D. A., Kochetov, A. V. & Khlestkina, E. K., 1 Nov 2017, In: Russian Journal of Genetics: Applied Research. 7, 7, p. 736-743 8 p.

    Research output: Contribution to journal › Article › peer-review

  195. Diversity of leaf pubescence in bread wheat and relative species

    Pshenichnikova, T. A., Doroshkov, A. V., Simonov, A. V., Afonnikov, D. A. & Börner, A., 1 Oct 2017, In: Genetic Resources and Crop Evolution. 64, 7, p. 1761-1773 13 p.

    Research output: Contribution to journal › Article › peer-review

  196. Candidate SNP markers of familial and sporadic Alzheimer's diseases are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters

    Ponomarenko, P., Chadaeva, I., Rasskazov, D. A., Sharypova, E., Kashina, E. V., Drachkova, I., Zhechev, D., Ponomarenko, M. P., Savinkova, L. K. & Kolchanov, N., 20 Jul 2017, In: Frontiers in Aging Neuroscience. 9, JUL, p. 231 24 p., 231.

    Research output: Contribution to journal › Article › peer-review

  197. Analysis of the neurogenesis: Prepattern gene network controlling first stage of bristle pattern development in Drosophila melanogaster

    Furman, D. P. & Bukharina, T. A., 1 Jul 2017, In: Russian Journal of Genetics: Applied Research. 7, 5, p. 550-557 8 p.

    Research output: Contribution to journal › Article › peer-review

  198. Expression dynamics of the REL, RELA, and IRF1 transcription factors in U937 macrophages after dioxin exposure

    Kashina, E. V., Oshchepkov, D. Y., Antontseva, E. V., Shamanina, M. Y., Furman, D. P. & Mordvinov, V. A., 1 Jul 2017, In: Russian Journal of Genetics: Applied Research. 7, 5, p. 580-584 5 p.

    Research output: Contribution to journal › Article › peer-review

  199. SNP_TATA_Comparator: genomewide landmarks for preventive personalized medicine

    Ponomarenko, M., Rasskazov, D., Chadaeva, I., Sharypova, E., Ponomarenko, P., Arkova, O., Kashina, E., Ivanisenko, N., Zhechev, D., Savinkova, L. & Kolchanov, N., 1 Jun 2017, In: Frontiers in bioscience (Scholar edition). 9, p. 276-306 31 p.

    Research output: Contribution to journal › Review article › peer-review

  200. Systems biology analysis of the WOX5 gene and its functions in the root stem cell niche

    Oshchepkova, E. A., Omelyanchuk, N. A., Savina, M. S., Pasternak, T., Kolchanov, N. A. & Zemlyanskaya, E. V., 1 Jun 2017, In: Russian Journal of Genetics: Applied Research. 7, 4, p. 404-420 17 p.

    Research output: Contribution to journal › Article › peer-review

  201. Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots

    Omelyanchuk, N. A., Wiebe, D. S., Novikova, D. D., Levitsky, V. G., Klimova, N., Gorelova, V., Weinholdt, C., Vasiliev, G. V., Zemlyanskaya, E. V., Kolchanov, N. A., Kochetov, A. V., Grosse, I. & Mironova, V. V., 30 May 2017, In: Scientific Reports. 7, 1, p. 2489 11 p., 2489.

    Research output: Contribution to journal › Article › peer-review

  202. Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions

    Medvedev, K. E., Kolchanov, N. A. & Afonnikov, D. A., 1 Apr 2017, In: Journal of Bioinformatics and Computational Biology. 15, 2, p. 1650036 18 p., 1650036.

    Research output: Contribution to journal › Article › peer-review

  203. Protein and genetic composition of four chromatin types in Drosophila melanogaster cell lines

    Boldyreva, L. V., Goncharov, F. P., Demakova, O. V., Zykova, T. Y., Levitsky, V. G., Kolesnikov, N. N., Pindyurin, A. V., Semeshin, V. F. & Zhimulev, I. F., 1 Apr 2017, In: Current Genomics. 18, 2, p. 214-226 13 p.

    Research output: Contribution to journal › Article › peer-review

  204. AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs

    Kochetov, A. V., Allmer, J., Klimenko, A. I., Zuraev, B. S., Matushkin, Y. G., Lashin, S. A. & Hancock, J., 15 Mar 2017, In: Bioinformatics. 33, 6, p. 923-925 3 p.

    Research output: Contribution to journal › Article › peer-review

  205. Status and prospects of marker-assisted and genomic plant breeding

    Kolchanov, N. A., Kochetov, A. V., Salina, E. A., Pershina, L. A., Khlestkina, E. K. & Shumny, V. K., 1 Mar 2017, In: Herald of the Russian Academy of Sciences. 87, 2, p. 125-131 7 p.

    Research output: Contribution to journal › Article › peer-review

  206. Orthoscape: A cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles

    Mustafin, Z. S., Lashin, S. A., Matushkin, Y. G., Gunbin, K. V. & Afonnikov, D. A., 27 Jan 2017, In: Bioinformatics. 18, Suppl 1, p. 1-9 9 p., 28.

    Research output: Contribution to journal › Article › peer-review

  207. The interplay of chromatin landscape and DNA-binding context suggests distinct modes of EIN3 regulation in Arabidopsis thaliana

    Zemlyanskaya, E. V., Levitsky, V. G., Oshchepkov, D. Y., Grosse, I. & Mironova, V. V., 9 Jan 2017, In: Frontiers in Plant Science. 7, 9 p., 2044.

    Research output: Contribution to journal › Article › peer-review

  208. Evaluation of the SeedCounter, a mobile application for grain phenotyping

    Komyshev, E., Genaev, M. & Afonnikov, D., 4 Jan 2017, In: Frontiers in Plant Science. 7, p. 1990 9 p., 1990.

    Research output: Contribution to journal › Article › peer-review

  209. Achievements and prospects of applying high-throughput sequencing techniques to potato genetics and breeding

    Bykova, I. V., Shmakov, N. A., Afonnikov, D. A., Kochetov, A. V. & Khlestkina, E. K., 1 Jan 2017, In: Вавиловский журнал генетики и селекции. 21, 1, p. 96-103 8 p.

    Research output: Contribution to journal › Article › peer-review

  210. Dihydroartemisinin counteracts fibrotic portal hypertension via farnesoid X receptor-dependent inhibition of hepatic stellate cell contraction

    Endutkin, A., Popov, A., Yudkina, A., Makasheva, K., Afonnikov, D., Simmerling, C. & Zharkov, D., 1 Jan 2017, In: FEBS Journal. 284, 1, p. 114-133 20 p.

    Research output: Contribution to journal › Article › peer-review

  211. Modern opportunities for improving quality of bakery products via realizing the bread wheat genetic potential-by-environment interactions (review)

    Khlestkina, E. K., Zhuravleva, E. V., Pshenichnikova, T. A., Usenko, N. I., Morozova, E. V., Osipova, S. V., Permyakova, M. D., Afonnikov, D. A. & Otmakhova, Y. S., 1 Jan 2017, In: Sel'skokhozyaistvennaya Biologiya. 52, 3, p. 501-514 14 p.

    Research output: Contribution to journal › Article › peer-review

  212. Online resources on gene networks containing human and animal data

    Ignatieva, E. V., Afonnikov, D. A. & Kolchanov, N. A., 1 Jan 2017, In: Вавиловский журнал генетики и селекции. 21, 8, p. 895-902 8 p.

    Research output: Contribution to journal › Article › peer-review

  213. 2016

  214. Mechanical behavior of cells within a cell-based model of wheat leaf growth

    Zubairova, U., Nikolaev, S., Penenko, A., Podkolodnyy, N., Golushko, S., Afonnikov, D. & Kolchanov, N., 15 Dec 2016, In: Frontiers in Plant Science. 7, DECEMBER2016, 15 p., 1878.

    Research output: Contribution to journal › Article › peer-review

  215. 2015

  216. Development of artificial cognitive systems based on models of the brain of living organisms

    Putintsev, N. I., Vishnevsky, O. V. & Vityaev, E. E., 1 Nov 2015, In: Russian Journal of Genetics: Applied Research. 5, 6, p. 589-600 12 p.

    Research output: Contribution to journal › Article › peer-review

ID: 3081871