Computational Transcriptomics and Evolutionary Bioinformatics Laboratory

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Rdbms And Nosql Based Hybrid Technology for Transcriptome Data Structuring and Processing
Mukhin, A. M., Genaev, M. A., Rasskazov, D. A., Lashin, S. A. & Afonnikov, D. A., 2020, In: Mathematical Biology and Bioinformatics. 15, 2, p. 455-470 16 p.
Research output: Contribution to journal › Article › peer-review
Reconstruction and Analysis of Gene Networks of Human Neurotransmitter Systems Reveal Genes with Contentious Manifestation for Anxiety, Depression, and Intellectual Disabilities
Ivanov, R., Zamyatin, V., Klimenko, A., Matushkin, Y., Savostyanov, A. & Lashin, S., 11 Sept 2019, In: Genes. 10, 9, 14 p., 699.
Research output: Contribution to journal › Article › peer-review
Reconstruction and analysis of the gene regulatory network for cell wall function in Arabidopsis thaliana L. leaves in response to water deficit
Volyanskaya, A. R., Antropova, E. A., Zubairova, U. S., Demenkov, P. S., Venzel, A. S., Orlov, Y. L., Makarova, A. A., Ivanisenko, T. V., Gorshkova, T. A., Aglyamova, A. R., Kolchanov, N. A., Chen, M. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1031-1041 11 p.
Research output: Contribution to journal › Article › peer-review
Residue coevolution reveals functionally important intramolecular interactions in formamidopyrimidine-DNA glycosylase
Endutkin, A. V., Koptelov, S. S., Popov, A. V., Torgasheva, N. A., Lomzov, A. A., Tsygankova, A. R., Skiba, T. V., Afonnikov, D. A. & Zharkov, D. O., 1 Sept 2018, In: DNA Repair. 69, p. 24-33 10 p.
Research output: Contribution to journal › Article › peer-review
Rocks in the auxin stream: Wound-induced auxin accumulation and ERF115 expression synergistically drive stem cell regeneration
Canher, B., Heyman, J., Savina, M., Devendran, A., Eekhout, T., Vercauteren, I., Prinsen, E., Matosevich, R., Xu, J., Mironova, V. & de Veylder, L., 14 Jul 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 28, p. 16667-16677 11 p.
Research output: Contribution to journal › Article › peer-review
Salicylic Acid Affects Root Meristem Patterning via Auxin Distribution in a Concentration-Dependent Manner
Pasternak, T., Groot, E. P., Kazantsev, F. V., Teale, W., Omelyanchuk, N., Kovrizhnykh, V., Palme, K. & Mironova, V. V., 1 Jul 2019, In: Plant Physiology. 180, 3, p. 1725-1739 15 p.
Research output: Contribution to journal › Article › peer-review
Spatial heterogeneity promotes antagonistic evolutionary scenarios in microbial community explained by ecological stratification: a simulation study
Klimenko, A. I., Matushkin, Y. G., Kolchanov, N. A. & Lashin, S. A., 1 May 2019, In: Ecological Modelling. 399, p. 66-76 11 p.
Research output: Contribution to journal › Article › peer-review
Spatial specificity of auxin responses coordinates wood formation
Brackmann, K., Qi, J., Gebert, M., Jouannet, V., Schlamp, T., Grünwald, K., Wallner, E. S., Novikova, D. D., Levitsky, V. G., Agustí, J., Sanchez, P., Lohmann, J. U. & Greb, T., 28 Feb 2018, In: Nature Communications. 9, 1, p. 875 15 p., 875.
Research output: Contribution to journal › Article › peer-review
Specification and regulation of vascular tissue identity in the Arabidopsis embryo
Smit, M. E., Llavata-Peris, C. I., Roosjen, M., van Beijnum, H., Novikova, D., Levitsky, V., Sevilem, I., Roszak, P., Slane, D., Jürgens, G., Mironova, V., Brady, S. M. & Weijers, D., 20 Apr 2020, In: Development (Cambridge). 147, 8, 15 p., dev186130.
Research output: Contribution to journal › Article › peer-review
SpikeDroidDB: An information system for annotation of morphometric characteristics of wheat spike
Genaev, M. A., Komyshev, E. G., Hao, F., Koval, V. S., Goncharov, N. P. & Afonnikov, D. A., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 1, p. 132-140 9 p.
Research output: Contribution to journal › Article › peer-review

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