Targeted correction of megabase-scale CNTN6 duplication in induced pluripotent stem cells and impacts on gene expression

Gridina, M., Orlova, P. & Serov, O., 20 Jan 2025, In: PeerJ. 13, 1, e18567.

Research output: Contribution to journal › Article › peer-review

Auxin Triggers AHR Pathway Activation in the Auxin-Inducible Degron System in Mammalian Cells

Yunusova, A., Zadorozhnyi, D. & Battulin, N., 1 Dec 2024, In: Biochemistry (Moscow). 89, 12, p. 2214-2226 13 p.

Research output: Contribution to journal › Article › peer-review

Candidate SNP markers of changes in the expression levels of the human SCN9A gene as a hub gene for pain generation, perception, response and anesthesia

Dotsenko, P. A., Zolotareva, K. A., Ivanov, R. A., Chadaeva, I. V., Podkolodnyy, N. L., Ivanisenko, V. A., Demenkov, P. S., Lashin, S. A. & Ponomarenko, M. P., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 808-821 14 p.

Research output: Contribution to journal › Article › peer-review

Candidate SNP Markers Significantly Altering the Affinity of the TATA-Binding Protein for the Promoters of Human Genes Associated with Primary Open-Angle Glaucoma

Zolotareva, K., Dotsenko, P. A., Podkolodnyy, N., Ivanov, R., Makarova, A. L., Chadaeva, I., Bogomolov, A., Demenkov, P. S., Ivanisenko, V., Oshchepkov, D. & Ponomarenko, M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12802.

Research output: Contribution to journal › Article › peer-review

Could SLC26A7 Be a Promising Marker for Preoperative Diagnosis of High-Grade Papillary Thyroid Carcinoma?

Titov, S. E., Kozorezova, E. S., Lukyanov, S. A., Sergiyko, S. V., Demenkov, P. S., Veryaskina, Y. A., Vorobyev, S. L., Sleptsov, I. V., Chernikov, R. A., Timofeeva, N. I., Barashkova, S. V., Lushnikova, E. L., Uspenskaya, A. A., Zolotoukho, A. V., Romanova, O. V. & Zhimulev, I. F., Dec 2024, In: Diagnostics. 14, 23, 2652.

Research output: Contribution to journal › Article › peer-review

Reconstruction and computational analysis of the microRNA regulation gene network in wheat drought response mechanisms

Kleshchev, M. A., Maltseva, A. V., Antropova, E. A., Demenkov, P. S., Ivanisenko, T. V., Orlov, Y. L., Chao, H., Chen, M., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 904-917 14 p.

Research output: Contribution to journal › Article › peer-review

Root cap border cells as regulators of rhizosphere microbiota

Omelyanchuk, N. A., Cherenko, V. A. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 918-926 9 p.

Research output: Contribution to journal › Article › peer-review

Structural variants in the Epb41l4a locus: TAD disruption and Nrep gene misregulation as hypothetical drivers of neurodevelopmental outcomes

Salnikov, P., Korablev, A., Serova, I., Belokopytova, P., Yan, A., Stepanchuk, Y., Tikhomirov, S. & Fishman, V., Dec 2024, In: Scientific Reports. 14, 1, 8 p., 5288.

Research output: Contribution to journal › Article › peer-review

TAD border deletion at the Kit locus causes tissue-specific ectopic activation of a neighboring gene

Kabirova, E., Ryzhkova, A., Lukyanchikova, V., Khabarova, A., Korablev, A., Shnaider, T., Nuriddinov, M., Belokopytova, P., Smirnov, A., Khotskin, N. V., Kontsevaya, G., Serova, I. & Battulin, N., Dec 2024, In: Nature Communications. 15, 1, 16 p., 4521.

Research output: Contribution to journal › Article › peer-review

Targeting type I DED interactions at the DED filament serves as a sensitive switch for cell fate decisions

König, C., Ivanisenko, N. V., Hillert-Richter, L. K., Namjoshi, D., Natu, K., Espe, J., Reinhold, D., Kolchanov, N. A., Ivanisenko, V. A., Kähne, T., Bose, K. & Lavrik, I. N., 21 Nov 2024, In: Cell Chemical Biology. 31, 11, p. 1969-1985.e6 24 p.

Research output: Contribution to journal › Article › peer-review

Design of Ctenophore Ca2+-Regulated Photoprotein Berovin Capable of Being Converted into Active Protein Under Physiological Conditions: Computational and Experimental Approaches

Burakova, L. P., Ivanisenko, N. V., Rukosueva, N. V., Ivanisenko, V. A. & Vysotski, E. S., 19 Nov 2024, In: Life. 14, 11, 1508.

Research output: Contribution to journal › Article › peer-review

Loop Extrusion Machinery Impairments in Models and Disease

Ryzhkova, A., Maltseva, E., Battulin, N. & Kabirova, E., 17 Nov 2024, In: Cells. 13, 22, 1896.

Research output: Contribution to journal › Review article › peer-review

Cytokinins regulate spatially specific ethylene production to control root growth in Arabidopsis

Yamoune, A., Zdarska, M., Depaepe, T., Rudolfova, A., Skalak, J., Berendzen, K. W., Mira-Rodado, V., Fitz, M., Pekarova, B., Nicolas Mala, K. L., Tarr, P., Spackova, E., Tomovicova, L., Parizkova, B., Franczyk, A., Kovacova, I., Dolgikh, V., Zemlyanskaya, E., Pernisova, M., Novak, O., & 4 othersMeyerowitz, E., Harter, K., Van Der Straeten, D. & Hejatko, J., 11 Nov 2024, In: Plant Communications. 5, 11, 17 p., 101013.

Research output: Contribution to journal › Article › peer-review

Церамиды как потенциально новые предикторы тяжести течения острого коронарного синдрома в сочетании с инфекцией SARS-CoV-2

Lozhkina, N. G., Gushchina, O. I., Basov, N. V., Gaisler, E. V., Rogachev, A. D., Sotnikova, Y. S., Patrushev, Y. V. & Pokrovsky, A. G., 5 Nov 2024, In: Acta Naturae. 16, 2(61), p. 53-60 8 p.

Research output: Contribution to journal › Article › peer-review

An Accurate and Efficient Approach to Knowledge Extraction from Scientific Publications Using Structured Ontology Models, Graph Neural Networks, and Large Language Models

Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., 3 Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11811.

Research output: Contribution to journal › Article › peer-review

AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium

Ivanisenko, V. A., Rogachev, A. D., Makarova, A-L. A., Basov, N. V., Gaisler, E. V., Kuzmicheva, I. N., Demenkov, P. S., Venzel, A. S., Ivanisenko, T. V., Antropova, E. A., Kolchanov, N. A., Plesko, V. V., Moroz, G. B., Lomivorotov, V. V. & Pokrovsky, A. G., Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11847.

Research output: Contribution to journal › Article › peer-review

Primary multistep phosphorelay activation comprises both cytokinin and abiotic stress responses: insights from comparative analysis of Brassica type-A response regulators

Nicolas Mala, K. L., Skalak, J., Zemlyanskaya, E., Dolgikh, V., Jedlickova, V., Robert, H. S., Havlickova, L., Panzarova, K., Trtilek, M., Bancroft, I. & Hejatko, J., 1 Oct 2024, In: Journal of Experimental Botany. 75, 20, p. 6346-6368 23 p.

Research output: Contribution to journal › Article › peer-review

Characterizing a lethal CAG-ACE2 transgenic mouse model for SARS-CoV-2 infection using Cas9-enhanced nanopore sequencing

Smirnov, A., Nurislamov, A., Koncevaya, G., Serova, I., Kabirova, E., Chuyko, E., Maltceva, E., Savoskin, M., Zadorozhny, D., Svyatchenko, V. A., Protopopova, E. V., Taranov, O. S., Legostaev, S. S., Loktev, V. B., Serov, O. & Battulin, N., Oct 2024, In: Transgenic Research. 33, 5, p. 453-466 14 p.

Research output: Contribution to journal › Article › peer-review

Generation and analysis of mouse embryonic stem cells with knockout of the Mcph1 (microcephalin) gene

Yunusova, A. M., Smirnov, A. V., Shnaider, T. A., Pristyazhnuk, I. E., Korableva, S. Y. & Battulin, N. R., 23 Sept 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 5, p. 487-494 8 p.

Research output: Contribution to journal › Article › peer-review

A potent, broadly neutralizing human monoclonal antibody that efficiently protects hACE2-transgenic mice from infection with the Wuhan, BA.5, and XBB.1.5 SARS-CoV-2 variants

Guselnikov, S. V., Baranov, K. O., Kulemzin, S. V., Belovezhets, T. N., Chikaev, A. N., Murasheva, S. V., Volkova, O. Y., Mechetina, L. V., Najakshin, A. M., Chikaev, N. A., Solodkov, P. P., Sergeeva, M. V., Smirnov, A. V., Serova, I. A., Serov, O. L., Markhaev, A. G., Kononova, Y. V., Alekseev, A. Y., Gulyaeva, M. A., Danilenko, D. M., & 3 othersBattulin, N. R., Shestopalov, A. M. & Taranin, A. V., 9 Aug 2024, In: Frontiers in Immunology. 15, 8 p., 1442160.

Research output: Contribution to journal › Article › peer-review

Computational Reconstruction of the Transcription Factor Regulatory Network Induced by Auxin in Arabidopsis thaliana L.

Omelyanchuk, N. A., Lavrekha, V. V., Bogomolov, A. G., Dolgikh, V. A., Sidorenko, A. D. & Zemlyanskaya, E. V., Jul 2024, In: Plants. 13, 14, 1905.

Research output: Contribution to journal › Article › peer-review

Prediction of the Aggressive Clinical Course of Papillary Thyroid Carcinoma Based on Fine Needle Aspiration Biopsy Molecular Testing

Lukyanov, S. A., Titov, S. E., Kozorezova, E. S., Demenkov, P. S., Veryaskina, Y. A., Korotovskii, D. V., Ilyina, T. E., Vorobyev, S. L., Zhivotov, V. A., Bondarev, N. S., Sleptsov, I. V. & Sergiyko, S. V., Jul 2024, In: International Journal of Molecular Sciences. 25, 13, 14 p., 7090.

Research output: Contribution to journal › Article › peer-review

A HGF Mutation in the Familial Case of Primary Lymphedema: A Report

Koksharova, G., Kokh, N., Gridina, M., Khapaev, R., Nimaev, V. & Fishman, V., May 2024, In: International Journal of Molecular Sciences. 25, 10, 5464.

Research output: Contribution to journal › Article › peer-review

Assessing cell lines with inducible depletion of cohesin and condensins components through analysis of metaphase chromosome morphology

Yunusova, A. M., Smirnov, A. V., Pristyazhnuk, I. E., Shnaider, T. A., Maltseva, E. K., Afonnikova, S. D., Gusev, O. A. & Battulin, N. R., Apr 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 2, p. 138-147 10 p., 2.

Research output: Contribution to journal › Article › peer-review

Genetic Mechanisms Regulating Root Cap Cell Renewal in Arabidopsis thaliana L.

Cherenko, V. A., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Apr 2024, In: Russian Journal of Plant Physiology. 71, 2, 12 p., 51.

Research output: Contribution to journal › Article › peer-review

Modification of the Hi-C Technology for Molecular Genetic Analysis of Formalin-Fixed Paraffin-Embedded Sections of Tumor Tissues

Gridina, M. M., Stepanchuk, Y. K., Nurridinov, M. A., Lagunov, T. A., Torgunakov, N. Y., Shadsky, A. A., Ryabova, A. I., Vasiliev, N. V., Vtorushin, S. V., Gerashchenko, T. S., Denisov, E. V., Travin, M. A., Korolev, M. A. & Fishman, V. S., Apr 2024, In: Biochemistry (Moscow). 89, 4, p. 637-652 16 p.

Research output: Contribution to journal › Article › peer-review

Towards Development of the 4C-Based Method Detecting Interactions of Plasmid DNA with Host Genome

Yan, A. P., Salnikov, P. A., Gridina, M. M., Belokopytova, P. S. & Fishman, V. S., Apr 2024, In: Biochemistry (Moscow). 89, 4, p. 653-662 10 p.

Research output: Contribution to journal › Article › peer-review

Global LC-MS/MS targeted metabolomics using a combination of HILIC and RP LC separation modes on an organic monolithic column based on 1-vinyl-1,2,4-triazole

Basov, N. V., Rogachev, A. D., Aleshkova, M. A., Gaisler, E. V., Sotnikova, Y. S., Patrushev, Y. V., Tolstikova, T. G., Yarovaya, O. I., Pokrovsky, A. G. & Salakhutdinov, N. F., 15 Jan 2024, In: Talanta. 267, 125168.

Research output: Contribution to journal › Article › peer-review

AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.

Bogomolov, A., Zolotareva, K., Filonov, S., Chadaeva, I., Rasskazov, D., Sharypova, E., Podkolodnyy, N., Ponomarenko, P., Savinkova, L., Tverdokhleb, N., Khandaev, B., Kondratyuk, E., Podkolodnaya, O., Zemlyanskaya, E., Kolchanov, N. A. & Ponomarenko, M., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 607.

Research output: Contribution to journal › Article › peer-review

Hormone-regulated expansins: expression, localization, and cell wall biomechanics in Arabidopsis root growth

Samalova, M., Melnikava, A., Elsayad, K., Peaucelle, A., Gahurova, E., Gumulec, J., Spyroglou, I., Zemlyanskaya, E. V., Ubogoeva, E. V., Balkova, D., Demko, M., Blavet, N., Alexiou, P., Benes, V., Mouille, G. & Hejatko, J., Jan 2024, In: Plant Physiology. 194, 1, p. 209-228 20 p.

Research output: Contribution to journal › Article › peer-review

Knockout of the Tnfa Gene Decreases Influenza Virus-Induced Histological Reactions in Laboratory Mice

Savenkova, D. A., Gudymo, A. S., Korablev, A. N., Taranov, O. S., Bazovkina, D. V., Danilchenko, N. V., Perfilyeva, O. N., Ivleva, E. K., Moiseeva, A. A., Bulanovich, Y. A., Roshchina, E. V., Serova, I. A., Battulin, N. R., Kulikova, E. A. & Yudkin, D. V., Jan 2024, In: International Journal of Molecular Sciences. 25, 2, 1156.

Research output: Contribution to journal › Article › peer-review

Computational identification of promising genetic markers associated with molecular mechanisms of reduced rice resistance to Rhizoctonia solani under excess nitrogen fertilization using gene network reconstruction and analysis methods

Antropova, E. A., Volyanskaya, A. R., Adamovskaya, A. V., Demenkov, P. S., Yatsyk, I. V., Ivanisenko, T. V., Orlov, Y. L., Haoyu, C., Chen, M. & Ivanisenko, V. A., 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 960-973 14 p.

Research output: Contribution to journal › Article › peer-review

Investigation of metabolic features of glioblastoma tissue and the peritumoral environment using targeted metabolomics screening by LC-MS/MS and gene network analysis

Basov, N. V., Adamovskaya, A. V., Rogachev, A. D., Gaisler, E. V., Demenkov, P. S., Ivanisenko, T. V., Venzel, A. S., Mishinov, S. V., Stupak, V. V., Cheresiz, S. V., Oleshko, O. S., Butikova, E. A., Osechkova, A. E., Sotnikova, Y. S., Patrushev, Y. V., Pozdnyakov, A. S., Lavrik, I. N., Ivanisenko, V. A. & Pokrovsky, A. G., 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 882-896 15 p.

Research output: Contribution to journal › Article › peer-review

PlantReg: the reconstruction of links between transcription factor regulatory networks and biological processes under their control

Lavrekha, V. V., Omelyanchuk, N. A., Bogomolov, A. G. & Zemlyanskaya, E. V., 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 950-959 10 p.

Research output: Contribution to journal › Article › peer-review

Reconstruction of gene regulatory networks from single cell transcriptomic data

Rybakov, M. A., Omelyanchuk, N. A. & Zemlyanskaya, E. V., 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 974-981 8 p.

Research output: Contribution to journal › Article › peer-review

Сравнительная молекулярная оценка неизмененной слизистой оболочки сегментов толстой кишки как возможной основы аденом

Korotkevich, A. G., Zhilina, N. M., Demenkov, P. S., Veryaskina, Y. A. & Titov, S. E., 2024, In: Экспериментальная и клиническая гастроэнтерология. 4 (224), p. 20-29 10 p., 3.

Research output: Contribution to journal › Article › peer-review

Expanding the list of sequence-agnostic enzymes for chromatin conformation capture assays with S1 nuclease

Maria, G., Andrey, P., Artem, S., Nikita, T., Andrey, K., Evgeny, K., Oxana, R., Maxim, F. & Veniamin, F., 11 Dec 2023, In: Epigenetics & chromatin. 16, 1, 13 p., 48.

Research output: Contribution to journal › Article › peer-review

DyCeModel: a tool for 1D simulation for distribution of plant hormones controlling tissue patterning

Azarova, D. S., Omelyanchuk, N. A., Mironova, V. V., Zemlyanskaya, E. V. & Lavrekha, V. V., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 890-897 8 p.

Research output: Contribution to journal › Article › peer-review

Gene networks for use in metabolomic data analysis of blood plasma from patients with postoperative delirium

Ivanisenko, V. A., Basov, N. V., Makarova, A. A., Venzel, A. S., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Kleshchev, M. A., Gaisler, E. V., Moroz, G. B., Plesko, V. V., Sotnikova, Y. S., Patrushev, Y. V., Lomivorotov, V. V., Kolchanov, N. A. & Pokrovsky, A. G., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 768-775 8 p.

Research output: Contribution to journal › Article › peer-review

InterTransViewer: a comparative description of differential gene expression profiles from different experiments

Tyapkin, А. V., Lavrekha, V. V., Ubogoeva, E. V., Oshchepkov, D. Y., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1042-1052 11 p.

Research output: Contribution to journal › Article › peer-review

Molecular-genetic pathways of hepatitis C virus regulation of the expression of cellular factors PREB and PLA2G4C, which play an important role in virus replication

Mishchenko, E. L., Makarova, A. A., Antropova, E. A., Venzel, A. S., Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 776-783 8 p.

Research output: Contribution to journal › Article › peer-review

Prioritization of potential pharmacological targets for the development of anti-hepatocarcinoma drugs modulating the extrinsic apoptosis pathway: the reconstruction and analysis of associative gene networks help

Demenkov, P. S., Antropova, E. A., Adamovskaya, A. V., Mishchenko, E. L., Khlebodarova, T. M., Ivanisenko, T. V., Ivanisenko, N. V., Venzel, A. S., Lavrik, I. N. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 784-793 10 p.

Research output: Contribution to journal › Article › peer-review

Reconstruction and analysis of the gene regulatory network for cell wall function in Arabidopsis thaliana L. leaves in response to water deficit

Volyanskaya, A. R., Antropova, E. A., Zubairova, U. S., Demenkov, P. S., Venzel, A. S., Orlov, Y. L., Makarova, A. A., Ivanisenko, T. V., Gorshkova, T. A., Aglyamova, A. R., Kolchanov, N. A., Chen, M. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1031-1041 11 p.

Research output: Contribution to journal › Article › peer-review

Repurposing Antihypertensive and Statin Medications for Spinal Pain: A Mendelian Randomization Study

Suri, P., Elgaeva, E. E., Williams, F. M. K., Freidin, M. B., Verzun, D. A. & Tsepilov, Y. A., 15 Nov 2023, In: Spine. 48, 22, p. 1568-1574 7 p.

Research output: Contribution to journal › Article › peer-review

Bidirectional Mendelian Randomization study of personality traits reveals a positive feedback loop between neuroticism and back pain

Elgaeva, E. E., Williams, F. M. K., Zaytseva, O. O., Freidin, M. B., Aulchenko, Y. S., Suri, P. & Tsepilov, Y. A., Oct 2023, In: The journal of pain. 24, 10, p. 1875-1885 11 p.

Research output: Contribution to journal › Article › peer-review

Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder

Uvarova, Y. E., Demenkov, P. S., Kuzmicheva, I. N., Venzel, A. S., Mischenko, E. L., Ivanisenko, T. V., Efimov, V. M., Bannikova, S. V., Vasilieva, A. R., Ivanisenko, V. A. & Peltek, S. E., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 12 p.

Research output: Contribution to journal › Article › peer-review

Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection

Antropova, E. A., Khlebodarova, T. M., Demenkov, P. S., Volianskaia, A. R., Venzel, A. S., Ivanisenko, N. V., Gavrilenko, A. D., Ivanisenko, T. V., Adamovskaya, A. V., Revva, P. M., Kolchanov, N. A., Lavrik, I. N. & Ivanisenko, V. A., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 12 p.

Research output: Contribution to journal › Article › peer-review

Evidence of causal effects of blood pressure on back pain and back pain on type II diabetes provided by a bidirectional Mendelian randomization study

Suri, P., Elgaeva, E. E., Williams, F. M. K., Freidin, M. B., Zaytseva, O. O., Aulchenko, Y. S. & Tsepilov, Y. A., Aug 2023, In: Spine Journal. 23, 8, p. 1161-1171 11 p.

Research output: Contribution to journal › Article › peer-review

Genotype-by-environment interactions in chronic back pain

Kuznetsov, I. A., Tsepilov, Y. A., Freidin, M. B., Williams, F. M. K., Suri, P. & Aulchenko, Y. S., Aug 2023, In: Spine Journal. 23, 8, p. 1108-1114 7 p.

Research output: Contribution to journal › Article › peer-review

Specifics of the Taxonomic Composition of Bacterial Microflora in the Respiratory Microbiome of Patients with Chronic Dust Bronchitis

Paradnikova, S. A., Druzhinin, V. G., Baranova, E. D., Demenkov, P. S. & Larionov, A. V., Jun 2023, In: Molecular Genetics, Microbiology and Virology. 38, 2, p. 70-78 9 p.

Research output: Contribution to journal › Article › peer-review

Cell type-specific interpretation of noncoding variants using deep learning-based methods

Sindeeva, M., Chekanov, N., Avetisian, M., Shashkova, T. I., Baranov, N., Malkin, E., Lapin, A., Kardymon, O. & Fishman, V., 20 Mar 2023, In: GigaScience. 12, p. 1-11 11 p., giad015.

Research output: Contribution to journal › Article › peer-review

Function and Evolution of the Loop Extrusion Machinery in Animals

Kabirova, E., Nurislamov, A., Shadskiy, A., Smirnov, A., Popov, A., Salnikov, P., Battulin, N. & Fishman, V., 6 Mar 2023, In: International Journal of Molecular Sciences. 24, 5, 5017.

Research output: Contribution to journal › Review article › peer-review

A Cre-LoxP-based approach for combinatorial chromosome rearrangements in human HAP1 cells

Khabarova, A., Koksharova, G., Salnikov, P., Belokopytova, P., Mungalov, R., Pristyazhnuk, I., Nurislamov, A., Gridina, M. & Fishman, V., 26 Feb 2023, In: Chromosome Research. 31, 1, 15 p., 11.

Research output: Contribution to journal › Article › peer-review

Composition of bacterial microbiome in sputum of patients with localized forms of pulmonary tuberculosis

Druzhinin, V. G., Baranova, E. D., Demenkov, P. S., Zakharova, J. V., Lavryashina, M. B., Larionov, A. V., Matskova, L. V., Shabaldin, A. V. & Pyanzova, T. V., 2023, In: Pulmonologiya. 33, 5, p. 645-656 12 p.

Research output: Contribution to journal › Article › peer-review

Anopheles mosquitoes reveal new principles of 3D genome organization in insects

Lukyanchikova, V., Nuriddinov, M., Belokopytova, P., Taskina, A., Liang, J., Reijnders, M. J. M. F., Ruzzante, L., Feron, R., Waterhouse, R. M., Wu, Y., Mao, C., Tu, Z., Sharakhov, I. V. & Fishman, V., Dec 2022, In: Nature Communications. 13, 1, 1960.

Research output: Contribution to journal › Article › peer-review

Evaluation of the α-casein (CSN1S1) locus as a potential target for a site-specific transgene integration

Smirnov, A. V., Kontsevaya, G. V., Shnaider, T. A., Yunusova, A. M., Feofanova, N. A., Gerlinskaya, L. A., Serova, I. A., Serov, O. L. & Battulin, N. R., Dec 2022, In: Scientific Reports. 12, 1, 7983.

Research output: Contribution to journal › Article › peer-review

FastContext: A tool for identification of adapters and other sequence patterns in next generation sequencing (NGS) data

Viesná, Е. & Fishman, V., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 806-809 4 p., 10.

Research output: Contribution to journal › Article › peer-review

Genetic regulation of post-translational modification of two distinct proteins

Landini, A., Trbojević-Akmačić, I., Navarro, P., Tsepilov, Y. A., Sharapov, S. Z., Vučković, F., Polašek, O., Hayward, C., Petrović, T., Vilaj, M., Aulchenko, Y. S., Lauc, G., Wilson, J. F. & Klarić, L., Dec 2022, In: Nature Communications. 13, 1, 1 p., 1586.

Research output: Contribution to journal › Article › peer-review

Молекулярные механизмы детерминации клеток сосудистой системы корня Arabidopsis thaliana L

Sidorenko, A. D., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 721-732 12 p., 1.

Research output: Contribution to journal › Article › peer-review

Method for the Isolation of “RNA-seq-Quality” RNA from Human Intervertebral Discs after Mortar and Pestle Homogenization

Ivanov, A. A., Leonova, O. N., Wiebe, D. S., Krutko, A. V., Gridina, M. M., Fishman, V. S., Aulchenko, Y. S., Tsepilov, Y. A. & Golubeva, T. S., Nov 2022, In: Cells. 11, 22, 3578.

Research output: Contribution to journal › Article › peer-review

Single-Cell DNA Methylation Analysis of Chicken Lampbrush Chromosomes

Nurislamov, A., Lagunov, T., Gridina, M., Krasikova, A. & Fishman, V., 20 Oct 2022, In: International Journal of Molecular Sciences. 23, 20, 12601.

Research output: Contribution to journal › Article › peer-review

Editorial: The role of high-order chromatin organization in gene regulation

Fishman, V. & Pindyurin, A. V., 3 Oct 2022, In: Frontiers in Genetics. 13, 1045787.

Research output: Contribution to journal › Editorial › peer-review

A Novel Framework for Analysis of the Shared Genetic Background of Correlated Traits

Svishcheva, G. R., Tiys, E. S., Elgaeva, E. E., Feoktistova, S. G., Timmers, P. R. H. J., Sharapov, S. Z., Axenovich, T. I. & Tsepilov, Y. A., Oct 2022, In: Genes. 13, 10, 1694.

Research output: Contribution to journal › Article › peer-review

Comparison and critical assessment of single-cell Hi-C protocols

Gridina, M., Taskina, A., Lagunov, T., Nurislamov, A., Kulikova, T., Krasikova, A. & Fishman, V., Oct 2022, In: Heliyon. 8, 10, 6 p., e11023.

Research output: Contribution to journal › Article › peer-review

Meet your MAKR: the membrane-associated kinase regulator protein family in the regulation of plant development

Novikova, D. D., Korosteleva, A. L., Mironova, V. & Jaillais, Y., Oct 2022, In: FEBS Journal. 289, 20, p. 6172-6186 15 p.

Research output: Contribution to journal › Review article › peer-review

The human EF1a promoter does not provide expression of the transgene in mice

Battulin, N., Korablev, A., Ryzhkova, A., Smirnov, A., Kabirova, E., Khabarova, A., Lagunov, T., Serova, I. & Serov, O., Oct 2022, In: Transgenic Research. 31, 4-5, p. 525-535 11 p.

Research output: Contribution to journal › Article › peer-review

CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

Lavrekha, V. V., Levitsky, V. G., Tsukanov, A. V., Bogomolov, A. G., Grigorovich, D. A., Omelyanchuk, N., Ubogoeva, E. V., Zemlyanskaya, E. V. & Mironova, V., 18 Aug 2022, In: Frontiers in Plant Science. 13, 942710.

Research output: Contribution to journal › Article › peer-review

Web-MCOT Server for Motif Co-Occurrence Search in ChIP-Seq Data

Levitsky, V. G., Mukhin, A. M., Oshchepkov, D. Y., Zemlyanskaya, E. V. & Lashin, S. A., 11 Aug 2022, In: International Journal of Molecular Sciences. 23, 16, 8981.

Research output: Contribution to journal › Article › peer-review

3DGenBench: a web-server to benchmark computational models for 3D Genomics

Belokopytova, P., Viesná, E., Chiliński, M., Qi, Y., Salari, H., Di Stefano, M., Esposito, A., Conte, M., Chiariello, A. M., Teif, V. B., Plewczynski, D., Zhang, B., Jost, D. & Fishman, V., 5 Jul 2022, In: Nucleic Acids Research. 50, W1, p. W4-W12

Research output: Contribution to journal › Article › peer-review

Causal effects of psychosocial factors on chronic back pain: a bidirectional Mendelian randomisation study

Williams, F. M. K., Elgaeva, E. E., Freidin, M. B., Zaytseva, O. O., Aulchenko, Y. S., Tsepilov, Y. A. & Suri, P., Jul 2022, In: European Spine Journal. 31, 7, p. 1906-1915 10 p.

Research output: Contribution to journal › Article › peer-review

Платформа GWAS-MAP|ovis для хранения и анализа результатов полногеномных ассоциативных исследований овец

A V Kirichenko, A. V., Zlobin, A. S., Shashkova, T. I., Volkova, N. A., Iolchiev, B. S., Bagirov, V. A., Borodin, P. M., Karssen, L. С., Tsepilov, Y. A. & Aulchenko, Y. S., Jul 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 4, p. 378-384 7 p., 6.

Research output: Contribution to journal › Article › peer-review

Создание трансгенных мышей, восприимчивых к коронавирусам: платформа изучения вирусного патогенеза и тестирования вакцин

Battulin, N. R. & Serov, O. L., Jul 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 4, p. 402-408 7 p., 9.

Research output: Contribution to journal › Article › peer-review

sumSTAAR: A flexible framework for gene-based association studies using GWAS summary statistics

Belonogova, N. M., Svishcheva, G. R., Kirichenko, A. V., Zorkoltseva, I. V., Tsepilov, Y. A. & Axenovich, T. I., Jun 2022, In: PLoS Computational Biology. 18, 6, e1010172.

Research output: Contribution to journal › Article › peer-review

Investigation of the causal relationships between human IgG N-glycosylation and 12 common diseases associated with changes in the IgG N-glycome

Zaytseva, O. O., Sharapov, S. Z., Perola, M., Esko, T., Landini, A., Hayward, C., Wilson, J. F., Lauc, G., Aulchenko, Y. S., Klarić, L. & Tsepilov, Y. A., 15 May 2022, In: Human Molecular Genetics. 31, 10, p. 1545-1559 15 p.

Research output: Contribution to journal › Article › peer-review

A protocol for recruiting and analyzing the disease-oriented Russian disc degeneration study (RuDDS) biobank for functional omics studies of lumbar disc degeneration

Leonova, O. N., Elgaeva, E. E., Golubeva, T. S., Peleganchuk, A. V., Krutko, A. V., Aulchenko, Y. S. & Tsepilov, Y. A., May 2022, In: PLoS ONE. 17, 5, e0267384.

Research output: Contribution to journal › Article › peer-review

Mendelian randomization analysis of plasma levels of CD209 and MICB proteins and the risk of varicose veins of lower extremities

Shadrina, A. S., Elgaeva, E. E., Stanaway, I. B., Jarvik, G. P., Namjou, B., Wei, W. Q., Glessner, J., Hakonarson, H., Suri, P. & Tsepilov, Y. A., May 2022, In: PLoS ONE. 17, 5, e0268725.

Research output: Contribution to journal › Article › peer-review

Salicylic Acid in Root Growth and Development

Bagautdinova, Z. Z., Omelyanchuk, N., Tyapkin, A. V., Kovrizhnykh, V. V., Lavrekha, V. V. & Zemlyanskaya, E. V., 1 Feb 2022, In: International Journal of Molecular Sciences. 23, 4, 2228.

Research output: Contribution to journal › Review article › peer-review

Mendelian randomization of genetically independent aging phenotypes identifies LPA and VCAM1 as biological targets for human aging

Timmers, P. R. H. J., Tiys, E. S., Sakaue, S., Akiyama, M., Kiiskinen, T. T. J., Zhou, W., Hwang, S. J., Yao, C., Kamatani, Y., Zhou, W., Deelen, J., Levy, D., Ganna, A., Kamatani, Y., Okada, Y., Joshi, P. K., Wilson, J. F. & Tsepilov, Y. A., Jan 2022, In: Nature Aging. 2, 1, p. 19-30 12 p.

Research output: Contribution to journal › Article › peer-review

Concatenation of transgenic DNA: Random or orchestrated?

Smirnov, A. & Battulin, N., Dec 2021, In: Genes. 12, 12, 1969.

Research output: Contribution to journal › Review article › peer-review

Genome-wide association study identifies RNF123 locus as associated with chronic widespread musculoskeletal pain

Rahman, M. S., Winsvold, B. S., Chavez Chavez, S. O., Børte, S., Tsepilov, Y. A., Sharapov, S. Z., Aulchenko, Y. S., Hagen, K., Fors, E. A., Hveem, K., Zwart, J. A., Van Meurs, J. B., Freidin, M. B. & Williams, F. M. K., 1 Sept 2021, In: Annals of the rheumatic diseases. 80, 9, p. 1227-1235 9 p.

Research output: Contribution to journal › Article › peer-review

Number of Genes Associated with Neuroticism due to Their Polymorphisms

Axenovich, T. I., Belonogova, N. M., Zorkoltseva, I. V. & Tsepilov, Y. A., Jul 2021, In: Russian Journal of Genetics. 57, 7, p. 863-866 4 p.

Research output: Contribution to journal › Article › peer-review

Genetically independent Phenotype Analysis Identifies LPA and VCAM1 as Drug Targets for Human Ageing

Timmers, P., Tiys, E., Sakaue, S., Akiyama, M., Kiiskinen, T., Zhou Wei, Hwang, S-J., Yao Chen, Deelen, J., Levy, D., Ganna, A., Kamatani, Y., Okada, Y., Joshi, P., Wilson, J. F. & Tsepilov, Y., May 2021, In: Human Heredity. 85, 2, p. 95-95 1 p.

Research output: Contribution to journal › Meeting Abstract › peer-review

Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures

Shi, D., Jouannet, V., Agustí, J., Kaul, V., Levitsky, V., Sanchez, P., Mironova, V. V. & Greb, T., 17 Apr 2021, In: The Plant cell. 33, 2, p. 200-223 24 p.

Research output: Contribution to journal › Article › peer-review

New model systems for RNA interference in plants to develop eco-friendly and effective antipathogenic tools

Urin, A. V. & Golubeva, T. S., 12 Apr 2021, In: IOP Conference Series: Earth and Environmental Science. 723, 2, 022040.

Research output: Contribution to journal › Conference article › peer-review

Silencing of Nicotiana benthamiana phytoendesaturase using dsRNA synthesized in vivo

Cherenko, V. A., Filipenko, E. A. & Golubeva, T. S., 12 Apr 2021, In: IOP Conference Series: Earth and Environmental Science. 723, 2, 022041.

Research output: Contribution to journal › Conference article › peer-review

Sex- and age-specific genetic analysis of chronic back pain

HUNT All-In Pain, 1 Apr 2021, In: Pain. 162, 4, p. 1176-1187 12 p.

Research output: Contribution to journal › Article › peer-review

A hypomorphic mutation in the mouse Csn1s1 gene generated by CRISPR/Cas9 pronuclear microinjection

Smirnov, A. V., Shnaider, T., Korablev, A. N., Yunusova, A. M., Serova, I. A. & Battulin, N. R., Mar 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 3, p. 331-336 6 p., 10.

Research output: Contribution to journal › Article › peer-review

Replication of 15 loci involved in human plasma protein N-glycosylation in 4802 samples from four cohorts

Sharapov, S. Z., Shadrina, A. S., Tsepilov, Y. A., Elgaeva, E. E., Tiys, E. S., Feoktistova, S. G., Zaytseva, O. O., Vuckovic, F., Cuadrat, R., Jäger, S., Wittenbecher, C., Karssen, L. C., Timofeeva, M., Tillin, T., Trbojević-Akmačić, I., Štambuk, T., Rudman, N., Krištić, J., Šimunović, J., Momčilović, A., & 21 othersVilaj, M., Jurić, J., Slana, A., Gudelj, I., Klarić, T., Puljak, L., Skelin, A., Kadić, A. J., Van Zundert, J., Chaturvedi, N., Campbell, H., Dunlop, M., Farrington, S. M., Doherty, M., Dagostino, C., Gieger, C., Allegri, M., Williams, F., Schulze, M. B., Lauc, G. & Aulchenko, Y. S., 1 Feb 2021, In: Glycobiology. 31, 2, p. 82-88 7 p.

Research output: Contribution to journal › Article › peer-review

Erythrocytes 3D genome organization in vertebrates

Ryzhkova, A., Taskina, A., Khabarova, A., Fishman, V. & Battulin, N., Feb 2021, In: Scientific Reports. 11, 1, 4414.

Research output: Contribution to journal › Article › peer-review

Recent Advances in the Development of Exogenous dsRNA for the Induction of RNA Interference in Cancer Therapy

Golubeva, T. S., Cherenko, V. A. & Orishchenko, K. E., 29 Jan 2021, In: Molecules (Basel, Switzerland). 26, 3, 701.

Research output: Contribution to journal › Review article › peer-review

Gene-based association analysis identifies 190 genes affecting neuroticism

Belonogova, N. M., Zorkoltseva, I. V., Tsepilov, Y. A. & Axenovich, T. I., 28 Jan 2021, In: Scientific Reports. 11, 1, 2484.

Research output: Contribution to journal › Article › peer-review

Генетические аспекты устойчивости картофеля к фитофторозу

Frolova, T. S., Cherenko, V. A., Sinitsyna, O. I. & Kochetov, A. V., 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 2, p. 164-170 7 p., 4.

Research output: Contribution to journal › Article › peer-review

A study of causal relationships between human IgG N-glycosylation traits and twelve associated diseases

Zaitseva, O. O., Sharapov, S. Z., Klaric, L., Lauc, G. & Tsepilov, Y. A., Dec 2020, In: Glycobiology. 30, 12, p. 1132-1132 1 p.

Research output: Contribution to journal › Meeting Abstract › peer-review

Candidate genes for age at menarche are associated with endometriosis

Ponomarenko, I., Reshetnikov, E., Polonikov, A., Verzilina, I., Sorokina, I., Elgaeva, E. E., Tsepilov, Y. A., Yermachenko, A., Dvornyk, V. & Churnosov, M., Nov 2020, In: Reproductive BioMedicine Online. 41, 5, p. 943-956 14 p.

Research output: Contribution to journal › Article › peer-review

Meta-analysis of transcriptome data detected new potential players in response to dioxin exposure in humans

Oshchepkova, E., Sizentsova, Y., Wiebe, D., Mironova, V. & Kolchanov, N., 23 Oct 2020, In: International Journal of Molecular Sciences. 21, 21, p. 1-20 20 p., 7858.

Research output: Contribution to journal › Article › peer-review

Cell Dynamics in WOX5-Overexpressing Root Tips: The Impact of Local Auxin Biosynthesis

Savina, M. S., Pasternak, T., Omelyanchuk, N. A., Novikova, D. D., Palme, K., Mironova, V. V. & Lavrekha, V. V., 22 Oct 2020, In: Frontiers in Plant Science. 11, 13 p., 560169.

Research output: Contribution to journal › Article › peer-review

The GWAS-MAP platform for aggregation of results of genome-wide association studies and the GWAS-MAP|homo database of 70 billion genetic associations of human traits

Shashkova, T. I., Gorev, D. D., Pakhomov, E. D., Shadrina, A. S., Sharapov, S. Z., Tsepilov, Y. A., Karssen, L. C. & Aulchenko, Y. S., 2020, In: Vavilovskii Zhurnal Genetiki i Selektsii. 24, 8, p. 876-884 9 p., 9.

Research output: Contribution to journal › Article › peer-review