Condensins-mediated mitotic folding persists as a structural echo in interphase chromatin

Yunusova, A., Tsoi, E., Smirnov, A., Shnaider, T., Pristyazhnuk, I., Gridina, M., Kazakov, E., Kireev, I., Myakinkov, I., Nuriddinov, M., Fishman, V. & Battulin, N., 24 Oct 2026, In: Nucleic Acids Research. 54, 20, 18 p., gkag1014.

Research output: Contribution to journal › Article › peer-review

Chromosome-level genome assembly of the sand martin (Riparia riparia)

Nuriddinov, M., Malinovskaya, L., Bobrovskikh, A., Gridina, M., Serdyukova, N. A., Suh, A., Ruiz-Ruano, F. J. & Torgasheva, A., 7 May 2026, In: Scientific Data. 13, 1, 10 p.

Research output: Contribution to journal › Article › peer-review

An Exceptionally Complex Chromosome Rearrangement in the Great Tit (Parus major): Genetic Composition, Meiotic Behavior and Population Frequency

Torgasheva, A., Malinovskaya, L., Nuriddinov, M., Zadesenets, K. S., Gridina, M., Nurislamov, A., Korableva, S., Pristyazhnyuk, I., Proskuryakova, A., Tishakova, K. V., Rubtsov, N. B., Fishman, V. S. & Borodin, P., 27 Dec 2025, In: Cells. 15, 1, 24 p., 52.

Research output: Contribution to journal › Article › peer-review

Chromatin landscape, transcriptomic and ChIP-seq profiling of Anopheles stephensi MSQ43 cell line

Lukyanchikova, V., Nuriddinov, M., Khabarova, A., Gridina, M., Popov, A., Belokopytova, P., Sharakhov, I. V. & Fishman, V., 26 Sept 2025, In: Scientific Data. 12, 1, p. 1566

Research output: Contribution to journal › Article › peer-review

Direction and modality of transcription changes caused by TAD boundary disruption in Slc29a3/Unc5b locus depends on tissue-specific epigenetic context

Salnikov, P., Belokopytova, P., Yan, A., Viesná, E., Korablev, A., Serova, I., Lukyanchikova, V., Stepanchuk, Y., Torgunakov, N., Tikhomirov, S. & Fishman, V., 12 Aug 2025, In: Epigenetics & chromatin. 18, 1, 55.

Research output: Contribution to journal › Article › peer-review

Combining chromosome conformation capture and exome sequencing for simultaneous detection of structural and single-nucleotide variants

Gridina, M., Lagunov, T., Belokopytova, P., Torgunakov, N., Nuriddinov, M., Nurislamov, A., Nazarenko, L. P., Kashevarova, A. A., Lopatkina, M. E., Vasilyev, S., Zuev, A., Belyaeva, E. O., Salyukova, O. A., Cheremnykh, A. D., Sukhanova, N. N., Minzhenkova, M. E., Markova, Z. G., Demina, N. A., Stepanchuk, Y., Khabarova, A., & 22 othersYan, A., Valeev, E., Koksharova, G., Grigor’eva, E. V., Kokh, N., Lukjanova, T., Maximova, Y., Musatova, E., Shabanova, E., Kechin, A., Khrapov, E., Boyarskih, U., Ryzhkova, O., Suntsova, M., Matrosova, A., Karoli, M., Manakhov, A., Filipenko, M., Rogaev, E., Shilova, N. V., Lebedev, I. N. & Fishman, V., 7 May 2025, In: Genome Medicine. 17, 1, p. 47 47.

Research output: Contribution to journal › Article › peer-review

Сравнение метаболомного профиля ликвора и плазмы крови пациентов с ремиттирующим рассеянным склерозом

Маркин, Д. С., Предтеченская, А. В., Рогачев, А. Д., Гайслер, Е. В. & Александрова, Ж. И., 2 Apr 2025, In: Коморбидная неврология. 2, 2, p. 28–38 11 p.

Research output: Contribution to journal › Article › peer-review

Targeted correction of megabase-scale CNTN6 duplication in induced pluripotent stem cells and impacts on gene expression

Gridina, M., Orlova, P. & Serov, O., 20 Jan 2025, In: PeerJ. 13, 1, e18567.

Research output: Contribution to journal › Article › peer-review

Поиск метаболомных предикторов немелкоклеточного рака легкого: данные пилотного исследования

Филиппов, А. А., Ложкина, Н. Г., Рогачев, А. Д., Гайслер, Е. В., Басов, Н. В., Сотникова, Ю. С., Патрушев, Ю. В. & Покровский, А. Г., 2025, In: Медико-фармацевтический журнал "Пульс". 27, 3, p. 10-20 11 p.

Research output: Contribution to journal › Article › peer-review

Программа PlantReg 1.1: анализ взаимного расположения сайтов связывания транскрипционных факторов в промоторах генов-мишеней для уточнения молекулярных механизмов их активности в регуляторных сетях

Lavrekha, V. V., Omelyanchuk, N. A., Bogomolov, A. G., Ryabov, Y. A., Mukebenova, P. K. & Zemlyanskaya, E. V., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 7, p. 940-951 12 p., 3.

Research output: Contribution to journal › Article › peer-review

Auxin Triggers AHR Pathway Activation in the Auxin-Inducible Degron System in Mammalian Cells

Yunusova, A., Zadorozhnyi, D. & Battulin, N., Dec 2024, In: Biochemistry (Moscow). 89, 12, p. 2214-2226 13 p., 10.

Research output: Contribution to journal › Article › peer-review

Candidate SNP markers of changes in the expression levels of the human SCN9A gene as a hub gene for pain generation, perception, response and anesthesia

Dotsenko, P. A., Zolotareva, K. A., Ivanov, R. A., Chadaeva, I. V., Podkolodnyy, N. L., Ivanisenko, V. A., Demenkov, P. S., Lashin, S. A. & Ponomarenko, M. P., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 808-821 14 p.

Research output: Contribution to journal › Article › peer-review

Candidate SNP Markers Significantly Altering the Affinity of the TATA-Binding Protein for the Promoters of Human Genes Associated with Primary Open-Angle Glaucoma

Zolotareva, K., Dotsenko, P. A., Podkolodnyy, N., Ivanov, R., Makarova, A. L., Chadaeva, I., Bogomolov, A., Demenkov, P. S., Ivanisenko, V., Oshchepkov, D. & Ponomarenko, M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12802.

Research output: Contribution to journal › Article › peer-review

Computational identification of promising genetic markers associated with molecular mechanisms of reduced rice resistance to Rhizoctonia solani under excess nitrogen fertilization using gene network reconstruction and analysis methods

Antropova, E. A., Volyanskaya, A. R., Adamovskaya, A. V., Demenkov, P. S., Yatsyk, I. V., Ivanisenko, T. V., Orlov, Y. L., Haoyu, C., Chen, M. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 960-973 14 p.

Research output: Contribution to journal › Article › peer-review

Could SLC26A7 Be a Promising Marker for Preoperative Diagnosis of High-Grade Papillary Thyroid Carcinoma?

Titov, S. E., Kozorezova, E. S., Lukyanov, S. A., Sergiyko, S. V., Demenkov, P. S., Veryaskina, Y. A., Vorobyev, S. L., Sleptsov, I. V., Chernikov, R. A., Timofeeva, N. I., Barashkova, S. V., Lushnikova, E. L., Uspenskaya, A. A., Zolotoukho, A. V., Romanova, O. V. & Zhimulev, I. F., Dec 2024, In: Diagnostics. 14, 23, 2652.

Research output: Contribution to journal › Article › peer-review

Investigation of metabolic features of glioblastoma tissue and the peritumoral environment using targeted metabolomics screening by LC-MS/MS and gene network analysis

Basov, N. V., Adamovskaya, A. V., Rogachev, A. D., Gaisler, E. V., Demenkov, P. S., Ivanisenko, T. V., Venzel, A. S., Mishinov, S. V., Stupak, V. V., Cheresiz, S. V., Oleshko, O. S., Butikova, E. A., Osechkova, A. E., Sotnikova, Y. S., Patrushev, Y. V., Pozdnyakov, A. S., Lavrik, I. N., Ivanisenko, V. A. & Pokrovsky, A. G., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 882-896 15 p.

Research output: Contribution to journal › Article › peer-review

PlantReg: the reconstruction of links between transcription factor regulatory networks and biological processes under their control

Lavrekha, V. V., Omelyanchuk, N. A., Bogomolov, A. G. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 950-959 10 p.

Research output: Contribution to journal › Article › peer-review

Reconstruction and computational analysis of the microRNA regulation gene network in wheat drought response mechanisms

Kleshchev, M. A., Maltseva, A. V., Antropova, E. A., Demenkov, P. S., Ivanisenko, T. V., Orlov, Y. L., Chao, H., Chen, M., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 904-917 14 p.

Research output: Contribution to journal › Article › peer-review

Reconstruction of gene regulatory networks from single cell transcriptomic data

Rybakov, M. A., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 974-981 8 p.

Research output: Contribution to journal › Article › peer-review

Root cap border cells as regulators of rhizosphere microbiota

Omelyanchuk, N. A., Cherenko, V. A. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 918-926 9 p.

Research output: Contribution to journal › Article › peer-review

Structural variants in the Epb41l4a locus: TAD disruption and Nrep gene misregulation as hypothetical drivers of neurodevelopmental outcomes

Salnikov, P., Korablev, A., Serova, I., Belokopytova, P., Yan, A., Stepanchuk, Y., Tikhomirov, S. & Fishman, V., Dec 2024, In: Scientific Reports. 14, 1, 8 p., 5288.

Research output: Contribution to journal › Article › peer-review

TAD border deletion at the Kit locus causes tissue-specific ectopic activation of a neighboring gene

Kabirova, E., Ryzhkova, A., Lukyanchikova, V., Khabarova, A., Korablev, A., Shnaider, T., Nuriddinov, M., Belokopytova, P., Smirnov, A., Khotskin, N. V., Kontsevaya, G., Serova, I. & Battulin, N., Dec 2024, In: Nature Communications. 15, 1, 16 p., 4521.

Research output: Contribution to journal › Article › peer-review

Targeting type I DED interactions at the DED filament serves as a sensitive switch for cell fate decisions

König, C., Ivanisenko, N. V., Hillert-Richter, L. K., Namjoshi, D., Natu, K., Espe, J., Reinhold, D., Kolchanov, N. A., Ivanisenko, V. A., Kähne, T., Bose, K. & Lavrik, I. N., 21 Nov 2024, In: Cell Chemical Biology. 31, 11, p. 1969-1985.e6 24 p.

Research output: Contribution to journal › Article › peer-review

Design of Ctenophore Ca2+-Regulated Photoprotein Berovin Capable of Being Converted into Active Protein Under Physiological Conditions: Computational and Experimental Approaches

Burakova, L. P., Ivanisenko, N. V., Rukosueva, N. V., Ivanisenko, V. A. & Vysotski, E. S., 19 Nov 2024, In: Life. 14, 11, 1508.

Research output: Contribution to journal › Article › peer-review

Loop Extrusion Machinery Impairments in Models and Disease

Ryzhkova, A., Maltseva, E., Battulin, N. & Kabirova, E., 17 Nov 2024, In: Cells. 13, 22, 1896.

Research output: Contribution to journal › Review article › peer-review

Cytokinins regulate spatially specific ethylene production to control root growth in Arabidopsis

Yamoune, A., Zdarska, M., Depaepe, T., Rudolfova, A., Skalak, J., Berendzen, K. W., Mira-Rodado, V., Fitz, M., Pekarova, B., Nicolas Mala, K. L., Tarr, P., Spackova, E., Tomovicova, L., Parizkova, B., Franczyk, A., Kovacova, I., Dolgikh, V., Zemlyanskaya, E., Pernisova, M., Novak, O., & 4 othersMeyerowitz, E., Harter, K., Van Der Straeten, D. & Hejatko, J., 11 Nov 2024, In: Plant Communications. 5, 11, 17 p., 101013.

Research output: Contribution to journal › Article › peer-review

Церамиды как потенциально новые предикторы тяжести течения острого коронарного синдрома в сочетании с инфекцией SARS-CoV-2

Lozhkina, N. G., Gushchina, O. I., Basov, N. V., Gaisler, E. V., Rogachev, A. D., Sotnikova, Y. S., Patrushev, Y. V. & Pokrovsky, A. G., 5 Nov 2024, In: Acta Naturae. 16, 2(61), p. 53-60 8 p.

Research output: Contribution to journal › Article › peer-review

An Accurate and Efficient Approach to Knowledge Extraction from Scientific Publications Using Structured Ontology Models, Graph Neural Networks, and Large Language Models

Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., 3 Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11811.

Research output: Contribution to journal › Article › peer-review

AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium

Ivanisenko, V. A., Rogachev, A. D., Makarova, A-L. A., Basov, N. V., Gaisler, E. V., Kuzmicheva, I. N., Demenkov, P. S., Venzel, A. S., Ivanisenko, T. V., Antropova, E. A., Kolchanov, N. A., Plesko, V. V., Moroz, G. B., Lomivorotov, V. V. & Pokrovsky, A. G., Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11847.

Research output: Contribution to journal › Article › peer-review

Primary multistep phosphorelay activation comprises both cytokinin and abiotic stress responses: insights from comparative analysis of Brassica type-A response regulators

Nicolas Mala, K. L., Skalak, J., Zemlyanskaya, E., Dolgikh, V., Jedlickova, V., Robert, H. S., Havlickova, L., Panzarova, K., Trtilek, M., Bancroft, I. & Hejatko, J., 1 Oct 2024, In: Journal of Experimental Botany. 75, 20, p. 6346-6368 23 p.

Research output: Contribution to journal › Article › peer-review

Characterizing a lethal CAG-ACE2 transgenic mouse model for SARS-CoV-2 infection using Cas9-enhanced nanopore sequencing

Smirnov, A., Nurislamov, A., Koncevaya, G., Serova, I., Kabirova, E., Chuyko, E., Maltceva, E., Savoskin, M., Zadorozhny, D., Svyatchenko, V. A., Protopopova, E. V., Taranov, O. S., Legostaev, S. S., Loktev, V. B., Serov, O. & Battulin, N., Oct 2024, In: Transgenic Research. 33, 5, p. 453-466 14 p.

Research output: Contribution to journal › Article › peer-review

Generation and analysis of mouse embryonic stem cells with knockout of the Mcph1 (microcephalin) gene

Yunusova, A. M., Smirnov, A. V., Shnaider, T. A., Pristyazhnuk, I. E., Korableva, S. Y. & Battulin, N. R., 23 Sept 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 5, p. 487-494 8 p.

Research output: Contribution to journal › Article › peer-review

A potent, broadly neutralizing human monoclonal antibody that efficiently protects hACE2-transgenic mice from infection with the Wuhan, BA.5, and XBB.1.5 SARS-CoV-2 variants

Guselnikov, S. V., Baranov, K. O., Kulemzin, S. V., Belovezhets, T. N., Chikaev, A. N., Murasheva, S. V., Volkova, O. Y., Mechetina, L. V., Najakshin, A. M., Chikaev, N. A., Solodkov, P. P., Sergeeva, M. V., Smirnov, A. V., Serova, I. A., Serov, O. L., Markhaev, A. G., Kononova, Y. V., Alekseev, A. Y., Gulyaeva, M. A., Danilenko, D. M., & 3 othersBattulin, N. R., Shestopalov, A. M. & Taranin, A. V., 9 Aug 2024, In: Frontiers in Immunology. 15, 8 p., 1442160.

Research output: Contribution to journal › Article › peer-review

Computational Reconstruction of the Transcription Factor Regulatory Network Induced by Auxin in Arabidopsis thaliana L.

Omelyanchuk, N. A., Lavrekha, V. V., Bogomolov, A. G., Dolgikh, V. A., Sidorenko, A. D. & Zemlyanskaya, E. V., 10 Jul 2024, In: Plants. 13, 14, 1905.

Research output: Contribution to journal › Article › peer-review

Prediction of the Aggressive Clinical Course of Papillary Thyroid Carcinoma Based on Fine Needle Aspiration Biopsy Molecular Testing

Lukyanov, S. A., Titov, S. E., Kozorezova, E. S., Demenkov, P. S., Veryaskina, Y. A., Korotovskii, D. V., Ilyina, T. E., Vorobyev, S. L., Zhivotov, V. A., Bondarev, N. S., Sleptsov, I. V. & Sergiyko, S. V., Jul 2024, In: International Journal of Molecular Sciences. 25, 13, 14 p., 7090.

Research output: Contribution to journal › Article › peer-review

A HGF Mutation in the Familial Case of Primary Lymphedema: A Report

Koksharova, G., Kokh, N., Gridina, M., Khapaev, R., Nimaev, V. & Fishman, V., May 2024, In: International Journal of Molecular Sciences. 25, 10, 5464.

Research output: Contribution to journal › Article › peer-review

Assessing cell lines with inducible depletion of cohesin and condensins components through analysis of metaphase chromosome morphology

Yunusova, A. M., Smirnov, A. V., Pristyazhnuk, I. E., Shnaider, T. A., Maltseva, E. K., Afonnikova, S. D., Gusev, O. A. & Battulin, N. R., Apr 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 2, p. 138-147 10 p., 2.

Research output: Contribution to journal › Article › peer-review

Genetic Mechanisms Regulating Root Cap Cell Renewal in Arabidopsis thaliana L.

Cherenko, V. A., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Apr 2024, In: Russian Journal of Plant Physiology. 71, 2, 12 p., 51.

Research output: Contribution to journal › Article › peer-review

Modification of the Hi-C Technology for Molecular Genetic Analysis of Formalin-Fixed Paraffin-Embedded Sections of Tumor Tissues

Gridina, M. M., Stepanchuk, Y. K., Nurridinov, M. A., Lagunov, T. A., Torgunakov, N. Y., Shadsky, A. A., Ryabova, A. I., Vasiliev, N. V., Vtorushin, S. V., Gerashchenko, T. S., Denisov, E. V., Travin, M. A., Korolev, M. A. & Fishman, V. S., Apr 2024, In: Biochemistry (Moscow). 89, 4, p. 637-652 16 p.

Research output: Contribution to journal › Article › peer-review

Towards Development of the 4C-Based Method Detecting Interactions of Plasmid DNA with Host Genome

Yan, A. P., Salnikov, P. A., Gridina, M. M., Belokopytova, P. S. & Fishman, V. S., Apr 2024, In: Biochemistry (Moscow). 89, 4, p. 653-662 10 p.

Research output: Contribution to journal › Article › peer-review

Global LC-MS/MS targeted metabolomics using a combination of HILIC and RP LC separation modes on an organic monolithic column based on 1-vinyl-1,2,4-triazole

Basov, N. V., Rogachev, A. D., Aleshkova, M. A., Gaisler, E. V., Sotnikova, Y. S., Patrushev, Y. V., Tolstikova, T. G., Yarovaya, O. I., Pokrovsky, A. G. & Salakhutdinov, N. F., 15 Jan 2024, In: Talanta. 267, 125168.

Research output: Contribution to journal › Article › peer-review

AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.

Bogomolov, A., Zolotareva, K., Filonov, S., Chadaeva, I., Rasskazov, D., Sharypova, E., Podkolodnyy, N., Ponomarenko, P., Savinkova, L., Tverdokhleb, N., Khandaev, B., Kondratyuk, E., Podkolodnaya, O., Zemlyanskaya, E., Kolchanov, N. A. & Ponomarenko, M., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 607.

Research output: Contribution to journal › Article › peer-review

Bidirectional Mendelian randomization analysis of back pain and 22 associated factors

Елгаева, Е. Е., Williams, F. M. K., Зайцева, О. О., Freidin, M. B., Aulchenko, Y. S., Цепилов, Я. А. & Suri, P., Jan 2024, In: European journal of human genetics. 32, S1, p. 346 1 p., EP25.008.

Research output: Contribution to journal › Conference article › peer-review

Exome sequencing association analysis replicated the role of rare variants of SLC13A1 in back pain

Zorkoltseva, I. V., Елгаева, Е. Е., Kirichenko, A., Belonogova, N. M., Svishcheva, G. R., Цепилов, Я. А. & Axenovich, T. I., Jan 2024, In: European journal of human genetics. 32, S1, p. 345 1 p., EP25.005.

Research output: Contribution to journal › Conference article › peer-review