1. 2025
  2. Линяя трансгенных мышей C57BL/6J-Tg(CMV-H2B-eGFP)12Ched, экспрессирующая флуоресцентно меченный гистон H2B в постнатальном возрасте и способ ее получения

    Чуйко, Э. А., Сальников, П. А. & Баттулин, Н. Р., 23 Oct 2025, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2849189, 20 Dec 2024, Priority date 20 Dec 2024, Priority No. 2024138584

    Research output: PatentPatent for invention

  3. Chromatin landscape, transcriptomic and ChIP-seq profiling of Anopheles stephensi MSQ43 cell line

    Lukyanchikova, V., Nuriddinov, M., Khabarova, A., Gridina, M., Popov, A., Belokopytova, P., Sharakhov, I. V. & Fishman, V., 26 Sept 2025, In: Scientific Data. 12, 1, p. 1566

    Research output: Contribution to journalArticlepeer-review

  4. Direction and modality of transcription changes caused by TAD boundary disruption in Slc29a3/Unc5b locus depends on tissue-specific epigenetic context

    Salnikov, P., Belokopytova, P., Yan, A., Viesná, E., Korablev, A., Serova, I., Lukyanchikova, V., Stepanchuk, Y., Torgunakov, N., Tikhomirov, S. & Fishman, V., 12 Aug 2025, In: Epigenetics & chromatin. 18, 1, 55.

    Research output: Contribution to journalArticlepeer-review

  5. Combining chromosome conformation capture and exome sequencing for simultaneous detection of structural and single-nucleotide variants

    Gridina, M., Lagunov, T., Belokopytova, P., Torgunakov, N., Nuriddinov, M., Nurislamov, A., Nazarenko, L. P., Kashevarova, A. A., Lopatkina, M. E., Vasilyev, S., Zuev, A., Belyaeva, E. O., Salyukova, O. A., Cheremnykh, A. D., Sukhanova, N. N., Minzhenkova, M. E., Markova, Z. G., Demina, N. A., Stepanchuk, Y., Khabarova, A., & 22 othersYan, A., Valeev, E., Koksharova, G., Grigor’eva, E. V., Kokh, N., Lukjanova, T., Maximova, Y., Musatova, E., Shabanova, E., Kechin, A., Khrapov, E., Boyarskih, U., Ryzhkova, O., Suntsova, M., Matrosova, A., Karoli, M., Manakhov, A., Filipenko, M., Rogaev, E., Shilova, N. V., Lebedev, I. N. & Fishman, V., 7 May 2025, In: Genome Medicine. 17, 1, p. 47 47.

    Research output: Contribution to journalArticlepeer-review

  6. Сравнение метаболомного профиля ликвора и плазмы крови пациентов с ремиттирующим рассеянным склерозом

    Маркин, Д. С., Предтеченская, А. В., Рогачев, А. Д., Гайслер, Е. В. & Александрова, Ж. И., 2 Apr 2025, In: Коморбидная неврология. 2, 2, p. 28–38 11 p.

    Research output: Contribution to journalArticlepeer-review

  7. Targeted correction of megabase-scale CNTN6 duplication in induced pluripotent stem cells and impacts on gene expression

    Gridina, M., Orlova, P. & Serov, O., 20 Jan 2025, In: PeerJ. 13, 1, e18567.

    Research output: Contribution to journalArticlepeer-review

  8. 2024
  9. Кандидатные прогностические и предиктивные транслокации высоко агрессивных форм мозговых опухолей

    Фишман, В. С. & Гридина, М. М., 10 Dec 2024, Редакционно-издательский центр НГУ, Patent No. 118, 10 Dec 2024, Priority date 10 Dec 2024

    Research output: PatentKnow-how registration

  10. Мультибаркодный плазмидный репортер на основе pCAGGS-mCherry

    Баттулин, Н. Р. & Смирнов, А. В., 10 Dec 2024, Редакционно-издательский центр НГУ, Patent No. 117, 10 Dec 2024, Priority date 10 Dec 2024

    Research output: PatentKnow-how registration

  11. Auxin Triggers AHR Pathway Activation in the Auxin-Inducible Degron System in Mammalian Cells

    Yunusova, A., Zadorozhnyi, D. & Battulin, N., Dec 2024, In: Biochemistry (Moscow). 89, 12, p. 2214-2226 13 p., 10.

    Research output: Contribution to journalArticlepeer-review

  12. Candidate SNP markers of changes in the expression levels of the human SCN9A gene as a hub gene for pain generation, perception, response and anesthesia

    Dotsenko, P. A., Zolotareva, K. A., Ivanov, R. A., Chadaeva, I. V., Podkolodnyy, N. L., Ivanisenko, V. A., Demenkov, P. S., Lashin, S. A. & Ponomarenko, M. P., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 808-821 14 p.

    Research output: Contribution to journalArticlepeer-review

  13. Candidate SNP Markers Significantly Altering the Affinity of the TATA-Binding Protein for the Promoters of Human Genes Associated with Primary Open-Angle Glaucoma

    Zolotareva, K., Dotsenko, P. A., Podkolodnyy, N., Ivanov, R., Makarova, A. L., Chadaeva, I., Bogomolov, A., Demenkov, P. S., Ivanisenko, V., Oshchepkov, D. & Ponomarenko, M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12802.

    Research output: Contribution to journalArticlepeer-review

  14. Computational identification of promising genetic markers associated with molecular mechanisms of reduced rice resistance to Rhizoctonia solani under excess nitrogen fertilization using gene network reconstruction and analysis methods

    Antropova, E. A., Volyanskaya, A. R., Adamovskaya, A. V., Demenkov, P. S., Yatsyk, I. V., Ivanisenko, T. V., Orlov, Y. L., Haoyu, C., Chen, M. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 960-973 14 p.

    Research output: Contribution to journalArticlepeer-review

  15. Could SLC26A7 Be a Promising Marker for Preoperative Diagnosis of High-Grade Papillary Thyroid Carcinoma?

    Titov, S. E., Kozorezova, E. S., Lukyanov, S. A., Sergiyko, S. V., Demenkov, P. S., Veryaskina, Y. A., Vorobyev, S. L., Sleptsov, I. V., Chernikov, R. A., Timofeeva, N. I., Barashkova, S. V., Lushnikova, E. L., Uspenskaya, A. A., Zolotoukho, A. V., Romanova, O. V. & Zhimulev, I. F., Dec 2024, In: Diagnostics. 14, 23, 2652.

    Research output: Contribution to journalArticlepeer-review

  16. Investigation of metabolic features of glioblastoma tissue and the peritumoral environment using targeted metabolomics screening by LC-MS/MS and gene network analysis

    Basov, N. V., Adamovskaya, A. V., Rogachev, A. D., Gaisler, E. V., Demenkov, P. S., Ivanisenko, T. V., Venzel, A. S., Mishinov, S. V., Stupak, V. V., Cheresiz, S. V., Oleshko, O. S., Butikova, E. A., Osechkova, A. E., Sotnikova, Y. S., Patrushev, Y. V., Pozdnyakov, A. S., Lavrik, I. N., Ivanisenko, V. A. & Pokrovsky, A. G., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 882-896 15 p.

    Research output: Contribution to journalArticlepeer-review

  17. PlantReg: the reconstruction of links between transcription factor regulatory networks and biological processes under their control

    Lavrekha, V. V., Omelyanchuk, N. A., Bogomolov, A. G. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 950-959 10 p.

    Research output: Contribution to journalArticlepeer-review

  18. Reconstruction and computational analysis of the microRNA regulation gene network in wheat drought response mechanisms

    Kleshchev, M. A., Maltseva, A. V., Antropova, E. A., Demenkov, P. S., Ivanisenko, T. V., Orlov, Y. L., Chao, H., Chen, M., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 904-917 14 p.

    Research output: Contribution to journalArticlepeer-review

  19. Reconstruction of gene regulatory networks from single cell transcriptomic data

    Rybakov, M. A., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 974-981 8 p.

    Research output: Contribution to journalArticlepeer-review

  20. Root cap border cells as regulators of rhizosphere microbiota

    Omelyanchuk, N. A., Cherenko, V. A. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 918-926 9 p.

    Research output: Contribution to journalArticlepeer-review

  21. Structural variants in the Epb41l4a locus: TAD disruption and Nrep gene misregulation as hypothetical drivers of neurodevelopmental outcomes

    Salnikov, P., Korablev, A., Serova, I., Belokopytova, P., Yan, A., Stepanchuk, Y., Tikhomirov, S. & Fishman, V., Dec 2024, In: Scientific Reports. 14, 1, 8 p., 5288.

    Research output: Contribution to journalArticlepeer-review

  22. TAD border deletion at the Kit locus causes tissue-specific ectopic activation of a neighboring gene

    Kabirova, E., Ryzhkova, A., Lukyanchikova, V., Khabarova, A., Korablev, A., Shnaider, T., Nuriddinov, M., Belokopytova, P., Smirnov, A., Khotskin, N. V., Kontsevaya, G., Serova, I. & Battulin, N., Dec 2024, In: Nature Communications. 15, 1, 16 p., 4521.

    Research output: Contribution to journalArticlepeer-review

  23. Targeting type I DED interactions at the DED filament serves as a sensitive switch for cell fate decisions

    König, C., Ivanisenko, N. V., Hillert-Richter, L. K., Namjoshi, D., Natu, K., Espe, J., Reinhold, D., Kolchanov, N. A., Ivanisenko, V. A., Kähne, T., Bose, K. & Lavrik, I. N., 21 Nov 2024, In: Cell Chemical Biology. 31, 11, p. 1969-1985.e6 24 p.

    Research output: Contribution to journalArticlepeer-review

  24. Design of Ctenophore Ca2+-Regulated Photoprotein Berovin Capable of Being Converted into Active Protein Under Physiological Conditions: Computational and Experimental Approaches

    Burakova, L. P., Ivanisenko, N. V., Rukosueva, N. V., Ivanisenko, V. A. & Vysotski, E. S., 19 Nov 2024, In: Life. 14, 11, 1508.

    Research output: Contribution to journalArticlepeer-review

  25. Loop Extrusion Machinery Impairments in Models and Disease

    Ryzhkova, A., Maltseva, E., Battulin, N. & Kabirova, E., 17 Nov 2024, In: Cells. 13, 22, 1896.

    Research output: Contribution to journalReview articlepeer-review

  26. Cytokinins regulate spatially specific ethylene production to control root growth in Arabidopsis

    Yamoune, A., Zdarska, M., Depaepe, T., Rudolfova, A., Skalak, J., Berendzen, K. W., Mira-Rodado, V., Fitz, M., Pekarova, B., Nicolas Mala, K. L., Tarr, P., Spackova, E., Tomovicova, L., Parizkova, B., Franczyk, A., Kovacova, I., Dolgikh, V., Zemlyanskaya, E., Pernisova, M., Novak, O., & 4 othersMeyerowitz, E., Harter, K., Van Der Straeten, D. & Hejatko, J., 11 Nov 2024, In: Plant Communications. 5, 11, 17 p., 101013.

    Research output: Contribution to journalArticlepeer-review

  27. An Accurate and Efficient Approach to Knowledge Extraction from Scientific Publications Using Structured Ontology Models, Graph Neural Networks, and Large Language Models

    Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., 3 Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11811.

    Research output: Contribution to journalArticlepeer-review

  28. AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium

    Ivanisenko, V. A., Rogachev, A. D., Makarova, A-L. A., Basov, N. V., Gaisler, E. V., Kuzmicheva, I. N., Demenkov, P. S., Venzel, A. S., Ivanisenko, T. V., Antropova, E. A., Kolchanov, N. A., Plesko, V. V., Moroz, G. B., Lomivorotov, V. V. & Pokrovsky, A. G., Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11847.

    Research output: Contribution to journalArticlepeer-review

  29. Primary multistep phosphorelay activation comprises both cytokinin and abiotic stress responses: insights from comparative analysis of Brassica type-A response regulators

    Nicolas Mala, K. L., Skalak, J., Zemlyanskaya, E., Dolgikh, V., Jedlickova, V., Robert, H. S., Havlickova, L., Panzarova, K., Trtilek, M., Bancroft, I. & Hejatko, J., 1 Oct 2024, In: Journal of Experimental Botany. 75, 20, p. 6346-6368 23 p.

    Research output: Contribution to journalArticlepeer-review

  30. Characterizing a lethal CAG-ACE2 transgenic mouse model for SARS-CoV-2 infection using Cas9-enhanced nanopore sequencing

    Smirnov, A., Nurislamov, A., Koncevaya, G., Serova, I., Kabirova, E., Chuyko, E., Maltceva, E., Savoskin, M., Zadorozhny, D., Svyatchenko, V. A., Protopopova, E. V., Taranov, O. S., Legostaev, S. S., Loktev, V. B., Serov, O. & Battulin, N., Oct 2024, In: Transgenic Research. 33, 5, p. 453-466 14 p.

    Research output: Contribution to journalArticlepeer-review

  31. Generation and analysis of mouse embryonic stem cells with knockout of the Mcph1 (microcephalin) gene

    Yunusova, A. M., Smirnov, A. V., Shnaider, T. A., Pristyazhnuk, I. E., Korableva, S. Y. & Battulin, N. R., 23 Sept 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 5, p. 487-494 8 p.

    Research output: Contribution to journalArticlepeer-review

  32. A potent, broadly neutralizing human monoclonal antibody that efficiently protects hACE2-transgenic mice from infection with the Wuhan, BA.5, and XBB.1.5 SARS-CoV-2 variants

    Guselnikov, S. V., Baranov, K. O., Kulemzin, S. V., Belovezhets, T. N., Chikaev, A. N., Murasheva, S. V., Volkova, O. Y., Mechetina, L. V., Najakshin, A. M., Chikaev, N. A., Solodkov, P. P., Sergeeva, M. V., Smirnov, A. V., Serova, I. A., Serov, O. L., Markhaev, A. G., Kononova, Y. V., Alekseev, A. Y., Gulyaeva, M. A., Danilenko, D. M., & 3 othersBattulin, N. R., Shestopalov, A. M. & Taranin, A. V., 9 Aug 2024, In: Frontiers in Immunology. 15, 8 p., 1442160.

    Research output: Contribution to journalArticlepeer-review

  33. SmartCrop cognitive platform: modules for automatic knowledge extraction from scientific publications, patents and factual databases for reconstruction and analysis of gene networks of stress response in rice and wheat

    Иванисенко, В. А., Деменков, П. С., Иванисенко, Т. В., Антропова, Е. А., Волянская, А. Р., Зубаирова, У. С., Макарова, А-Л. А., Орлов, Ю. Л. & Chen, M., Aug 2024, Bioinformatics of Genome Regulation and Structure Systems Biology (BGRS/SB-2024): The 14th International Multiconference (05-10 August 2024, Novosibirsk, Russia). Новосибирск: Институт цитологии и генетики СО РАН, p. 2188-2190 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

  34. Computational Reconstruction of the Transcription Factor Regulatory Network Induced by Auxin in Arabidopsis thaliana L.

    Omelyanchuk, N. A., Lavrekha, V. V., Bogomolov, A. G., Dolgikh, V. A., Sidorenko, A. D. & Zemlyanskaya, E. V., 10 Jul 2024, In: Plants. 13, 14, 1905.

    Research output: Contribution to journalArticlepeer-review

  35. Prediction of the Aggressive Clinical Course of Papillary Thyroid Carcinoma Based on Fine Needle Aspiration Biopsy Molecular Testing

    Lukyanov, S. A., Titov, S. E., Kozorezova, E. S., Demenkov, P. S., Veryaskina, Y. A., Korotovskii, D. V., Ilyina, T. E., Vorobyev, S. L., Zhivotov, V. A., Bondarev, N. S., Sleptsov, I. V. & Sergiyko, S. V., Jul 2024, In: International Journal of Molecular Sciences. 25, 13, 14 p., 7090.

    Research output: Contribution to journalArticlepeer-review

  36. A HGF Mutation in the Familial Case of Primary Lymphedema: A Report

    Koksharova, G., Kokh, N., Gridina, M., Khapaev, R., Nimaev, V. & Fishman, V., May 2024, In: International Journal of Molecular Sciences. 25, 10, 5464.

    Research output: Contribution to journalArticlepeer-review

  37. Assessing cell lines with inducible depletion of cohesin and condensins components through analysis of metaphase chromosome morphology

    Yunusova, A. M., Smirnov, A. V., Pristyazhnuk, I. E., Shnaider, T. A., Maltseva, E. K., Afonnikova, S. D., Gusev, O. A. & Battulin, N. R., Apr 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 2, p. 138-147 10 p., 2.

    Research output: Contribution to journalArticlepeer-review

  38. Genetic Mechanisms Regulating Root Cap Cell Renewal in Arabidopsis thaliana L.

    Cherenko, V. A., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Apr 2024, In: Russian Journal of Plant Physiology. 71, 2, 12 p., 51.

    Research output: Contribution to journalArticlepeer-review

  39. Modification of the Hi-C Technology for Molecular Genetic Analysis of Formalin-Fixed Paraffin-Embedded Sections of Tumor Tissues

    Gridina, M. M., Stepanchuk, Y. K., Nurridinov, M. A., Lagunov, T. A., Torgunakov, N. Y., Shadsky, A. A., Ryabova, A. I., Vasiliev, N. V., Vtorushin, S. V., Gerashchenko, T. S., Denisov, E. V., Travin, M. A., Korolev, M. A. & Fishman, V. S., Apr 2024, In: Biochemistry (Moscow). 89, 4, p. 637-652 16 p.

    Research output: Contribution to journalArticlepeer-review

  40. Towards Development of the 4C-Based Method Detecting Interactions of Plasmid DNA with Host Genome

    Yan, A. P., Salnikov, P. A., Gridina, M. M., Belokopytova, P. S. & Fishman, V. S., Apr 2024, In: Biochemistry (Moscow). 89, 4, p. 653-662 10 p.

    Research output: Contribution to journalArticlepeer-review

  41. AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.

    Bogomolov, A., Zolotareva, K., Filonov, S., Chadaeva, I., Rasskazov, D., Sharypova, E., Podkolodnyy, N., Ponomarenko, P., Savinkova, L., Tverdokhleb, N., Khandaev, B., Kondratyuk, E., Podkolodnaya, O., Zemlyanskaya, E., Kolchanov, N. A. & Ponomarenko, M., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 607.

    Research output: Contribution to journalArticlepeer-review

  42. Bidirectional Mendelian randomization analysis of back pain and 22 associated factors

    Елгаева, Е. Е., Williams, F. M. K., Зайцева, О. О., Freidin, M. B., Aulchenko, Y. S., Цепилов, Я. А. & Suri, P., Jan 2024, In: European journal of human genetics. 32, S1, p. 346 1 p., EP25.008.

    Research output: Contribution to journalConference articlepeer-review

  43. Exome sequencing association analysis replicated the role of rare variants of SLC13A1 in back pain

    Zorkoltseva, I. V., Елгаева, Е. Е., Kirichenko, A., Belonogova, N. M., Svishcheva, G. R., Цепилов, Я. А. & Axenovich, T. I., Jan 2024, In: European journal of human genetics. 32, S1, p. 345 1 p., EP25.005.

    Research output: Contribution to journalConference articlepeer-review

  44. Hormone-regulated expansins: expression, localization, and cell wall biomechanics in Arabidopsis root growth

    Samalova, M., Melnikava, A., Elsayad, K., Peaucelle, A., Gahurova, E., Gumulec, J., Spyroglou, I., Zemlyanskaya, E. V., Ubogoeva, E. V., Balkova, D., Demko, M., Blavet, N., Alexiou, P., Benes, V., Mouille, G. & Hejatko, J., Jan 2024, In: Plant Physiology. 194, 1, p. 209-228 20 p.

    Research output: Contribution to journalArticlepeer-review

  45. Knockout of the Tnfa Gene Decreases Influenza Virus-Induced Histological Reactions in Laboratory Mice

    Savenkova, D. A., Gudymo, A. S., Korablev, A. N., Taranov, O. S., Bazovkina, D. V., Danilchenko, N. V., Perfilyeva, O. N., Ivleva, E. K., Moiseeva, A. A., Bulanovich, Y. A., Roshchina, E. V., Serova, I. A., Battulin, N. R., Kulikova, E. A. & Yudkin, D. V., Jan 2024, In: International Journal of Molecular Sciences. 25, 2, 1156.

    Research output: Contribution to journalArticlepeer-review

  46. Сравнительная молекулярная оценка неизмененной слизистой оболочки сегментов толстой кишки как возможной основы аденом

    Korotkevich, A. G., Zhilina, N. M., Demenkov, P. S., Veryaskina, Y. A. & Titov, S. E., 2024, In: Экспериментальная и клиническая гастроэнтерология. 4 (224), p. 20-29 10 p., 3.

    Research output: Contribution to journalArticlepeer-review

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