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  1. 2025

  2. Metabolomic and gene networks approaches reveal the role of mitochondrial membrane proteins in response of human melanoma cells to THz radiation

    Butikova, E. A., Basov, N. V., Rogachev, A. D., Gaisler, E. V., Ivanisenko, V. A., Demenkov, P. S., Makarova, A. L. A., Ivanisenko, T. V., Razumov, I. A., Kolomeyets, D. A., Cheresiz, S. V., Solovieva, O. I., Larionov, K. P., Sotnikova, Y. S., Patrushev, Y. V., Kolchanov, N. A., Pokrovsky, A. G., Vinokurov, N. A., Kanygin, V. V., Popik, V. M., & 1 othersShevchenko, O. A., Mar 2025, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1870, 2, 17 p., 159595.

    Research output: Contribution to journal › Article › peer-review

  3. 2024

  4. Candidate SNP markers of changes in the expression levels of the human SCN9A gene as a hub gene for pain generation, perception, response and anesthesia

    Dotsenko, P. A., Zolotareva, K. A., Ivanov, R. A., Chadaeva, I. V., Podkolodnyy, N. L., Ivanisenko, V. A., Demenkov, P. S., Lashin, S. A. & Ponomarenko, M. P., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 808-821 14 p.

    Research output: Contribution to journal › Article › peer-review

  5. Candidate SNP Markers Significantly Altering the Affinity of the TATA-Binding Protein for the Promoters of Human Genes Associated with Primary Open-Angle Glaucoma

    Zolotareva, K., Dotsenko, P. A., Podkolodnyy, N., Ivanov, R., Makarova, A. L., Chadaeva, I., Bogomolov, A., Demenkov, P. S., Ivanisenko, V., Oshchepkov, D. & Ponomarenko, M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12802.

    Research output: Contribution to journal › Article › peer-review

  6. Could SLC26A7 Be a Promising Marker for Preoperative Diagnosis of High-Grade Papillary Thyroid Carcinoma?

    Titov, S. E., Kozorezova, E. S., Lukyanov, S. A., Sergiyko, S. V., Demenkov, P. S., Veryaskina, Y. A., Vorobyev, S. L., Sleptsov, I. V., Chernikov, R. A., Timofeeva, N. I., Barashkova, S. V., Lushnikova, E. L., Uspenskaya, A. A., Zolotoukho, A. V., Romanova, O. V. & Zhimulev, I. F., Dec 2024, In: Diagnostics. 14, 23, 2652.

    Research output: Contribution to journal › Article › peer-review

  7. Reconstruction and computational analysis of the microRNA regulation gene network in wheat drought response mechanisms

    Kleshchev, M. A., Maltseva, A. V., Antropova, E. A., Demenkov, P. S., Ivanisenko, T. V., Orlov, Y. L., Chao, H., Chen, M., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 904-917 14 p.

    Research output: Contribution to journal › Article › peer-review

  8. Программа для проведения филостратиграфического анализа генных сетей Homo sapiens, полученных с помощью ANDSystem (ЭНДФилострат) / A program for conducting phylostratigraphic analysis of Homo sapiens gene networks obtained using ANDSystem (ANDPhylostrat)

    Яцык, И. В., Иванисенко, Т. В., Деменков, П. С. & Иванисенко, В. А., 27 Nov 2024, Patent No. 2024688299, 24 Oct 2024, Priority date 24 Oct 2024, Priority No. 2024685094

    Research output: Patent › Software registration

  9. An Accurate and Efficient Approach to Knowledge Extraction from Scientific Publications Using Structured Ontology Models, Graph Neural Networks, and Large Language Models

    Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., 3 Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11811.

    Research output: Contribution to journal › Article › peer-review

  10. AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium

    Ivanisenko, V. A., Rogachev, A. D., Makarova, A-L. A., Basov, N. V., Gaisler, E. V., Kuzmicheva, I. N., Demenkov, P. S., Venzel, A. S., Ivanisenko, T. V., Antropova, E. A., Kolchanov, N. A., Plesko, V. V., Moroz, G. B., Lomivorotov, V. V. & Pokrovsky, A. G., Nov 2024, In: International Journal of Molecular Sciences. 25, 21, 11847.

    Research output: Contribution to journal › Article › peer-review

  11. SmartCrop cognitive platform: modules for automatic knowledge extraction from scientific publications, patents and factual databases for reconstruction and analysis of gene networks of stress response in rice and wheat

    Иванисенко, В. А., Деменков, П. С., Иванисенко, Т. В., Антропова, Е. А., Волянская, А. Р., Зубаирова, У. С., Макарова, А-Л. А., Орлов, Ю. Л. & Chen, M., Aug 2024, Bioinformatics of Genome Regulation and Structure Systems Biology (BGRS/SB-2024): The 14th International Multiconference (05-10 August 2024, Novosibirsk, Russia). Новосибирск: Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, p. 2188-2190 3 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  12. Prediction of the Aggressive Clinical Course of Papillary Thyroid Carcinoma Based on Fine Needle Aspiration Biopsy Molecular Testing

    Lukyanov, S. A., Titov, S. E., Kozorezova, E. S., Demenkov, P. S., Veryaskina, Y. A., Korotovskii, D. V., Ilyina, T. E., Vorobyev, S. L., Zhivotov, V. A., Bondarev, N. S., Sleptsov, I. V. & Sergiyko, S. V., Jul 2024, In: International Journal of Molecular Sciences. 25, 13, 14 p., 7090.

    Research output: Contribution to journal › Article › peer-review

  13. Computational identification of promising genetic markers associated with molecular mechanisms of reduced rice resistance to Rhizoctonia solani under excess nitrogen fertilization using gene network reconstruction and analysis methods

    Antropova, E. A., Volyanskaya, A. R., Adamovskaya, A. V., Demenkov, P. S., Yatsyk, I. V., Ivanisenko, T. V., Orlov, Y. L., Haoyu, C., Chen, M. & Ivanisenko, V. A., 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 960-973 14 p.

    Research output: Contribution to journal › Article › peer-review

  14. Gene networks and metabolomic screening analysis revealed specific pathways of amino acid and acylcarnitine profile alterations in blood plasma of patients with Parkinson’s disease and vascular parkinsonism

    Makarova, A. A., Melnikova, P. M., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Predtechenskaya, E. V., Karmanov, S. Y., Koval, V. V., Pokrovsky, A. G., Lavrik, I. N., Kolchanov, N. A. & Ivanisenko, V. A., 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 927-939 13 p.

    Research output: Contribution to journal › Article › peer-review

  15. Investigation of metabolic features of glioblastoma tissue and the peritumoral environment using targeted metabolomics screening by LC-MS/MS and gene network analysis

    Basov, N. V., Adamovskaya, A. V., Rogachev, A. D., Gaisler, E. V., Demenkov, P. S., Ivanisenko, T. V., Venzel, A. S., Mishinov, S. V., Stupak, V. V., Cheresiz, S. V., Oleshko, O. S., Butikova, E. A., Osechkova, A. E., Sotnikova, Y. S., Patrushev, Y. V., Pozdnyakov, A. S., Lavrik, I. N., Ivanisenko, V. A. & Pokrovsky, A. G., 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 882-896 15 p.

    Research output: Contribution to journal › Article › peer-review

  16. Reconstruction and computer analysis of the structural and functional organization of the gene network regulating cholesterol biosynthesis in humans and the evolutionary characteristics of the genes involved in the network

    Mikhailova, A. D., Lashin, S. A., Ivanisenko, V. A., Demenkov, P. S. & Игнатьева, Е. В., 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 864-873 10 p.

    Research output: Contribution to journal › Article › peer-review

  17. Сравнительная молекулярная оценка неизмененной слизистой оболочки сегментов толстой кишки как возможной основы аденом

    Korotkevich, A. G., Zhilina, N. M., Demenkov, P. S., Veryaskina, Y. A. & Titov, S. E., 2024, In: Экспериментальная и клиническая гастроэнтерология. 4 (224), p. 20-29 10 p., 3.

    Research output: Contribution to journal › Article › peer-review

  18. 2023

  19. Программа расшифровки аббревиатур сущностей в рефератах научных публикаций на основе их контекста (ЭНДДекрипт) / Program for decoding entity abbreviations in abstracts of scientific publications based on their context (ANDDecrypt)

    Иванисенко, Т. В., Деменков, П. С. & Иванисенко, В. А., 8 Dec 2023, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2023686851, 16 Nov 2023, Priority date 16 Nov 2023, Priority No. 2023684403

    Research output: Patent › Software registration

  20. Gene networks for use in metabolomic data analysis of blood plasma from patients with postoperative delirium

    Ivanisenko, V. A., Basov, N. V., Makarova, A. A., Venzel, A. S., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Kleshchev, M. A., Gaisler, E. V., Moroz, G. B., Plesko, V. V., Sotnikova, Y. S., Patrushev, Y. V., Lomivorotov, V. V., Kolchanov, N. A. & Pokrovsky, A. G., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 768-775 8 p.

    Research output: Contribution to journal › Article › peer-review

  21. Molecular-genetic pathways of hepatitis C virus regulation of the expression of cellular factors PREB and PLA2G4C, which play an important role in virus replication

    Mishchenko, E. L., Makarova, A. A., Antropova, E. A., Venzel, A. S., Ivanisenko, T. V., Demenkov, P. S. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 776-783 8 p.

    Research output: Contribution to journal › Article › peer-review

  22. Prioritization of potential pharmacological targets for the development of anti-hepatocarcinoma drugs modulating the extrinsic apoptosis pathway: the reconstruction and analysis of associative gene networks help

    Demenkov, P. S., Antropova, E. A., Adamovskaya, A. V., Mishchenko, E. L., Khlebodarova, T. M., Ivanisenko, T. V., Ivanisenko, N. V., Venzel, A. S., Lavrik, I. N. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 784-793 10 p.

    Research output: Contribution to journal › Article › peer-review

  23. Reconstruction and analysis of the gene regulatory network for cell wall function in Arabidopsis thaliana L. leaves in response to water deficit

    Volyanskaya, A. R., Antropova, E. A., Zubairova, U. S., Demenkov, P. S., Venzel, A. S., Orlov, Y. L., Makarova, A. A., Ivanisenko, T. V., Gorshkova, T. A., Aglyamova, A. R., Kolchanov, N. A., Chen, M. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1031-1041 11 p.

    Research output: Contribution to journal › Article › peer-review

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