AIMarkerFinder: AI-Assisted Marker Discovery Based on an Integrated Approach of Autoencoders and Kolmogorov–Arnold Networks

Demenkov, P. S., Ivanisenko, T. V. & Ivanisenko, V. A., 2026, In: Informatics. 13, 1, 13 p., 2.

Research output: Contribution to journal › Article › peer-review

MicroRNAs in Diffuse Large B-Cell Lymphoma (DLBCL): Biomarkers with Prognostic Potential

Veryaskina, Y. A., Titov, S. E., Kovynev, I. B., Fyodorova, S. S., Berezina, O. V., Zhurakovskij, I. P., Antonenko, O. V., Demakov, S. A., Demenkov, P. S., Ruzankin, P. S., Tarasenko, A. S., Pospelova, T. I. & Zhimulev, I. F., 12 Apr 2025, In: Cancers. 17, 8, 1300.

Research output: Contribution to journal › Article › peer-review

Metabolomic and gene networks approaches reveal the role of mitochondrial membrane proteins in response of human melanoma cells to THz radiation

Butikova, E. A., Basov, N. V., Rogachev, A. D., Gaisler, E. V., Ivanisenko, V. A., Demenkov, P. S., Makarova, A. L. A., Ivanisenko, T. V., Razumov, I. A., Kolomeyets, D. A., Cheresiz, S. V., Solovieva, O. I., Larionov, K. P., Sotnikova, Y. S., Patrushev, Y. V., Kolchanov, N. A., Pokrovsky, A. G., Vinokurov, N. A., Kanygin, V. V., Popik, V. M., & 1 othersShevchenko, O. A., Mar 2025, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1870, 2, 17 p., 159595.

Research output: Contribution to journal › Article › peer-review

Генная сеть и база знаний по терморегуляции организма человека

Ignatieva, E. V., Demenkov, P. S., Bogomolov, A. G., Ivanov, R. A., Lashin, S. A., Mikhailova, A. D., Alekseeva, A. E. & Yudin, N. S., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 7, p. 1009-1019 11 p., 9.

Research output: Contribution to journal › Article › peer-review

Применение программно-информационной системы ANDSystem для поиска мишеней таргетной терапии ревматоидного артрита на основе анализа биологических процессов

Mishchenko, E. L., Yatsyk, I. V., Demenkov, P. S., Adamovskaya, A. V., Ivanisenko, T. V., Kleshchev, M. A. & Ivanisenko, V. A., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 7, p. 1020-1030 11 p., 10.

Research output: Contribution to journal › Article › peer-review

Реконструкция и анализ генной сети регуляции апоптоза при гепатоцеллюлярной карциноме на основе данных scRNA-seq и базы знаний ANDSystem

Adamovskaya, A. V., Yatsyk, I. V., Kleshchev, M. A., Demenkov, P. S., Ivanisenko, T. V. & Ivanisenko, V. A., 2025, In: Vavilovskii Zhurnal Genetiki i Selektsii. 29, 7, p. 963-977 15 p., 5.

Research output: Contribution to journal › Article › peer-review

Сравнительная посегментарная молекулярно-генетическая оценка колоректального рака в содружестве эндоскопии и хирургии многопрофильной больницы

Korotkevich, A. G., Titov, S. E., Zhilina, N. M., Demenkov, P. S., Veryaskina, Y. A. & Marinich, Y. Y., 2025, In: Экспериментальная и клиническая гастроэнтерология. 2025, 5, p. 79-88 10 p.

Research output: Contribution to journal › Article › peer-review

Candidate SNP markers of changes in the expression levels of the human SCN9A gene as a hub gene for pain generation, perception, response and anesthesia

Dotsenko, P. A., Zolotareva, K. A., Ivanov, R. A., Chadaeva, I. V., Podkolodnyy, N. L., Ivanisenko, V. A., Demenkov, P. S., Lashin, S. A. & Ponomarenko, M. P., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 808-821 14 p.

Research output: Contribution to journal › Article › peer-review

Candidate SNP Markers Significantly Altering the Affinity of the TATA-Binding Protein for the Promoters of Human Genes Associated with Primary Open-Angle Glaucoma

Zolotareva, K., Dotsenko, P. A., Podkolodnyy, N., Ivanov, R., Makarova, A. L., Chadaeva, I., Bogomolov, A., Demenkov, P. S., Ivanisenko, V., Oshchepkov, D. & Ponomarenko, M., Dec 2024, In: International Journal of Molecular Sciences. 25, 23, 12802.

Research output: Contribution to journal › Article › peer-review

Computational identification of promising genetic markers associated with molecular mechanisms of reduced rice resistance to Rhizoctonia solani under excess nitrogen fertilization using gene network reconstruction and analysis methods

Antropova, E. A., Volyanskaya, A. R., Adamovskaya, A. V., Demenkov, P. S., Yatsyk, I. V., Ivanisenko, T. V., Orlov, Y. L., Haoyu, C., Chen, M. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 960-973 14 p.

Research output: Contribution to journal › Article › peer-review

Could SLC26A7 Be a Promising Marker for Preoperative Diagnosis of High-Grade Papillary Thyroid Carcinoma?

Titov, S. E., Kozorezova, E. S., Lukyanov, S. A., Sergiyko, S. V., Demenkov, P. S., Veryaskina, Y. A., Vorobyev, S. L., Sleptsov, I. V., Chernikov, R. A., Timofeeva, N. I., Barashkova, S. V., Lushnikova, E. L., Uspenskaya, A. A., Zolotoukho, A. V., Romanova, O. V. & Zhimulev, I. F., Dec 2024, In: Diagnostics. 14, 23, 2652.

Research output: Contribution to journal › Article › peer-review

Gene networks and metabolomic screening analysis revealed specific pathways of amino acid and acylcarnitine profile alterations in blood plasma of patients with Parkinson’s disease and vascular parkinsonism

Makarova, A. A., Melnikova, P. M., Rogachev, A. D., Demenkov, P. S., Ivanisenko, T. V., Predtechenskaya, E. V., Karmanov, S. Y., Koval, V. V., Pokrovsky, A. G., Lavrik, I. N., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 927-939 13 p.

Research output: Contribution to journal › Article › peer-review

Investigation of metabolic features of glioblastoma tissue and the peritumoral environment using targeted metabolomics screening by LC-MS/MS and gene network analysis

Basov, N. V., Adamovskaya, A. V., Rogachev, A. D., Gaisler, E. V., Demenkov, P. S., Ivanisenko, T. V., Venzel, A. S., Mishinov, S. V., Stupak, V. V., Cheresiz, S. V., Oleshko, O. S., Butikova, E. A., Osechkova, A. E., Sotnikova, Y. S., Patrushev, Y. V., Pozdnyakov, A. S., Lavrik, I. N., Ivanisenko, V. A. & Pokrovsky, A. G., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 882-896 15 p.

Research output: Contribution to journal › Article › peer-review

Reconstruction and computational analysis of the microRNA regulation gene network in wheat drought response mechanisms

Kleshchev, M. A., Maltseva, A. V., Antropova, E. A., Demenkov, P. S., Ivanisenko, T. V., Orlov, Y. L., Chao, H., Chen, M., Kolchanov, N. A. & Ivanisenko, V. A., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 904-917 14 p.

Research output: Contribution to journal › Article › peer-review

Reconstruction and computer analysis of the structural and functional organization of the gene network regulating cholesterol biosynthesis in humans and the evolutionary characteristics of the genes involved in the network

Mikhailova, A. D., Lashin, S. A., Ivanisenko, V. A., Demenkov, P. S. & Игнатьева, Е. В., Dec 2024, In: Вавиловский журнал генетики и селекции. 28, 8, p. 864-873 10 p.

Research output: Contribution to journal › Article › peer-review