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  1. 2023

  2. DyCeModel: a tool for 1D simulation for distribution of plant hormones controlling tissue patterning

    Azarova, D. S., Omelyanchuk, N. A., Mironova, V. V., Zemlyanskaya, E. V. & Lavrekha, V. V., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 890-897 8 p.

    Research output: Contribution to journal › Article › peer-review

  3. 2022

  4. Meet your MAKR: the membrane-associated kinase regulator protein family in the regulation of plant development

    Novikova, D. D., Korosteleva, A. L., Mironova, V. & Jaillais, Y., Oct 2022, In: FEBS Journal. 289, 20, p. 6172-6186 15 p.

    Research output: Contribution to journal › Review article › peer-review

  5. CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

    Lavrekha, V. V., Levitsky, V. G., Tsukanov, A. V., Bogomolov, A. G., Grigorovich, D. A., Omelyanchuk, N., Ubogoeva, E. V., Zemlyanskaya, E. V. & Mironova, V., 18 Aug 2022, In: Frontiers in Plant Science. 13, 942710.

    Research output: Contribution to journal › Article › peer-review

  6. A PLETHORA/PIN-FORMED/auxin network mediates prehaustorium formation in the parasitic plant Striga hermonthica

    Xiao, T. T., Kirschner, G. K., Kountche, B. A., Jamil, M., Savina, M., Lube, V., Mironova, V., Al Babili, S. & Blilou, I., Aug 2022, In: Plant Physiology. 189, 4, p. 2281-2297 17 p.

    Research output: Contribution to journal › Article › peer-review

  7. Motif models proposing independent and interdependent impacts of nucleotides are related to high and low affinity transcription factor binding sites in Arabidopsis

    Tsukanov, A. V., Mironova, V. V. & Levitsky, V. G., 28 Jul 2022, In: Frontiers in Plant Science. 13, 938545.

    Research output: Contribution to journal › Article › peer-review

  8. 2021

  9. Mechanisms of stress response in the root stem cell niche

    Ubogoeva, E. V., Zemlyanskaya, E. V., Xu, J. & Mironova, V., 13 Oct 2021, In: Journal of Experimental Botany. 72, 19, p. 6746-6754 9 p.

    Research output: Contribution to journal › Review article › peer-review

  10. Transcriptional regulation in plants: Using omics data to crack the cis-regulatory code

    Zemlyanskaya, E. V., Dolgikh, V. A., Levitsky, V. G. & Mironova, V., Oct 2021, In: Current Opinion in Plant Biology. 63, p. 102058 102058.

    Research output: Contribution to journal › Review article › peer-review

  11. Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures

    Shi, D., Jouannet, V., Agustí, J., Kaul, V., Levitsky, V., Sanchez, P., Mironova, V. V. & Greb, T., 17 Apr 2021, In: The Plant cell. 33, 2, p. 200-223 24 p.

    Research output: Contribution to journal › Article › peer-review

  12. 2020

  13. Meta-analysis of transcriptome data detected new potential players in response to dioxin exposure in humans

    Oshchepkova, E., Sizentsova, Y., Wiebe, D., Mironova, V. & Kolchanov, N., 23 Oct 2020, In: International Journal of Molecular Sciences. 21, 21, p. 1-20 20 p., 7858.

    Research output: Contribution to journal › Article › peer-review

  14. Cell Dynamics in WOX5-Overexpressing Root Tips: The Impact of Local Auxin Biosynthesis

    Savina, M. S., Pasternak, T., Omelyanchuk, N. A., Novikova, D. D., Palme, K., Mironova, V. V. & Lavrekha, V. V., 22 Oct 2020, In: Frontiers in Plant Science. 11, 13 p., 560169.

    Research output: Contribution to journal › Article › peer-review

  15. Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis

    Freire-Rios, A., Tanaka, K., Crespo, I., Van der Wijk, E., Sizentsova, Y., Levitsky, V., Lindhoud, S., Fontana, M., Hohlbein, J., Roeland Boer, D., Mironova, V. & Weijers, D., 29 Sept 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 39, p. 24557-24566 10 p.

    Research output: Contribution to journal › Article › peer-review

  16. Rocks in the auxin stream: Wound-induced auxin accumulation and ERF115 expression synergistically drive stem cell regeneration

    Canher, B., Heyman, J., Savina, M., Devendran, A., Eekhout, T., Vercauteren, I., Prinsen, E., Matosevich, R., Xu, J., Mironova, V. & de Veylder, L., 14 Jul 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 28, p. 16667-16677 11 p.

    Research output: Contribution to journal › Article › peer-review

  17. metaRE R package for meta-analysis of transcriptome data to identify the cis-regulatory code behind the transcriptional reprogramming

    Novikova, D. D., Cherenkov, P. A., Sizentsova, Y. G. & Mironova, V. V., 1 Jun 2020, In: Genes. 11, 6, p. 1-14 14 p., 634.

    Research output: Contribution to journal › Article › peer-review

  18. Specification and regulation of vascular tissue identity in the Arabidopsis embryo

    Smit, M. E., Llavata-Peris, C. I., Roosjen, M., van Beijnum, H., Novikova, D., Levitsky, V., Sevilem, I., Roszak, P., Slane, D., Jürgens, G., Mironova, V., Brady, S. M. & Weijers, D., 20 Apr 2020, In: Development (Cambridge). 147, 8, 15 p., dev186130.

    Research output: Contribution to journal › Article › peer-review

  19. Fold-change-specific enrichment analysis (FSEA): Quantification of transcriptional response magnitude for functional gene groups

    Wiebe, D. S., Omelyanchuk, N. A., Mukhin, A. M., Grosse, I., Lashin, S. A., Zemlyanskaya, E. V. & Mironova, V. V., 17 Apr 2020, In: Genes. 11, 4, 14 p., 434.

    Research output: Contribution to journal › Article › peer-review

  20. 3D Analysis of Mitosis Distribution Pattern in the Plant Root Tip with iRoCS Toolbox

    Lavrekha, V. V., Pasternak, T., Palme, K. & Mironova, V. V., 1 Jan 2020, In: Methods in molecular biology (Clifton, N.J.). 2094, p. 119-125 7 p.

    Research output: Contribution to journal › Article › peer-review

  21. PlantLayout pipeline to model tissue patterning

    Savina, M. S. & Mironova, V. V., 1 Jan 2020, In: Вавиловский журнал генетики и селекции. 24, 1, p. 102-107 6 p.

    Research output: Contribution to journal › Article › peer-review

  22. 2019

  23. A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package

    Levitsky, V., Zemlyanskaya, E., Oshchepkov, D., Podkolodnaya, O., Ignatieva, E., Grosse, I., Mironova, V. & Merkulova, T., 2 Dec 2019, In: Nucleic Acids Research. 47, 21, p. e139 14 p.

    Research output: Contribution to journal › Article › peer-review

  24. A single-cell view of tissue regeneration in plants

    Mironova, V. & Xu, J., Dec 2019, In: Current Opinion in Plant Biology. 52, p. 149-154 6 p.

    Research output: Contribution to journal › Review article › peer-review

  25. Salicylic Acid Affects Root Meristem Patterning via Auxin Distribution in a Concentration-Dependent Manner

    Pasternak, T., Groot, E. P., Kazantsev, F. V., Teale, W., Omelyanchuk, N., Kovrizhnykh, V., Palme, K. & Mironova, V. V., 1 Jul 2019, In: Plant Physiology. 180, 3, p. 1725-1739 15 p.

    Research output: Contribution to journal › Article › peer-review

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