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  1. 2023

  2. DyCeModel: a tool for 1D simulation for distribution of plant hormones controlling tissue patterning

    Azarova, D. S., Omelyanchuk, N. A., Mironova, V. V., Zemlyanskaya, E. V. & Lavrekha, V. V., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 890-897 8 p.

    Research output: Contribution to journal › Article › peer-review

  3. 2022

  4. Meet your MAKR: the membrane-associated kinase regulator protein family in the regulation of plant development

    Novikova, D. D., Korosteleva, A. L., Mironova, V. & Jaillais, Y., Oct 2022, In: FEBS Journal. 289, 20, p. 6172-6186 15 p.

    Research output: Contribution to journal › Review article › peer-review

  5. CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

    Lavrekha, V. V., Levitsky, V. G., Tsukanov, A. V., Bogomolov, A. G., Grigorovich, D. A., Omelyanchuk, N., Ubogoeva, E. V., Zemlyanskaya, E. V. & Mironova, V., 18 Aug 2022, In: Frontiers in Plant Science. 13, 942710.

    Research output: Contribution to journal › Article › peer-review

  6. A PLETHORA/PIN-FORMED/auxin network mediates prehaustorium formation in the parasitic plant Striga hermonthica

    Xiao, T. T., Kirschner, G. K., Kountche, B. A., Jamil, M., Savina, M., Lube, V., Mironova, V., Al Babili, S. & Blilou, I., Aug 2022, In: Plant Physiology. 189, 4, p. 2281-2297 17 p.

    Research output: Contribution to journal › Article › peer-review

  7. Motif models proposing independent and interdependent impacts of nucleotides are related to high and low affinity transcription factor binding sites in Arabidopsis

    Tsukanov, A. V., Mironova, V. V. & Levitsky, V. G., 28 Jul 2022, In: Frontiers in Plant Science. 13, 938545.

    Research output: Contribution to journal › Article › peer-review

  8. 2021

  9. Mechanisms of stress response in the root stem cell niche

    Ubogoeva, E. V., Zemlyanskaya, E. V., Xu, J. & Mironova, V., 13 Oct 2021, In: Journal of Experimental Botany. 72, 19, p. 6746-6754 9 p.

    Research output: Contribution to journal › Review article › peer-review

  10. Transcriptional regulation in plants: Using omics data to crack the cis-regulatory code

    Zemlyanskaya, E. V., Dolgikh, V. A., Levitsky, V. G. & Mironova, V., Oct 2021, In: Current Opinion in Plant Biology. 63, p. 102058 102058.

    Research output: Contribution to journal › Review article › peer-review

  11. Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures

    Shi, D., Jouannet, V., Agustí, J., Kaul, V., Levitsky, V., Sanchez, P., Mironova, V. V. & Greb, T., 17 Apr 2021, In: The Plant cell. 33, 2, p. 200-223 24 p.

    Research output: Contribution to journal › Article › peer-review

  12. 2020

  13. Meta-analysis of transcriptome data detected new potential players in response to dioxin exposure in humans

    Oshchepkova, E., Sizentsova, Y., Wiebe, D., Mironova, V. & Kolchanov, N., 23 Oct 2020, In: International Journal of Molecular Sciences. 21, 21, p. 1-20 20 p., 7858.

    Research output: Contribution to journal › Article › peer-review

  14. Cell Dynamics in WOX5-Overexpressing Root Tips: The Impact of Local Auxin Biosynthesis

    Savina, M. S., Pasternak, T., Omelyanchuk, N. A., Novikova, D. D., Palme, K., Mironova, V. V. & Lavrekha, V. V., 22 Oct 2020, In: Frontiers in Plant Science. 11, 13 p., 560169.

    Research output: Contribution to journal › Article › peer-review

  15. Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis

    Freire-Rios, A., Tanaka, K., Crespo, I., Van der Wijk, E., Sizentsova, Y., Levitsky, V., Lindhoud, S., Fontana, M., Hohlbein, J., Roeland Boer, D., Mironova, V. & Weijers, D., 29 Sept 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 39, p. 24557-24566 10 p.

    Research output: Contribution to journal › Article › peer-review

  16. Rocks in the auxin stream: Wound-induced auxin accumulation and ERF115 expression synergistically drive stem cell regeneration

    Canher, B., Heyman, J., Savina, M., Devendran, A., Eekhout, T., Vercauteren, I., Prinsen, E., Matosevich, R., Xu, J., Mironova, V. & de Veylder, L., 14 Jul 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 28, p. 16667-16677 11 p.

    Research output: Contribution to journal › Article › peer-review

  17. metaRE R package for meta-analysis of transcriptome data to identify the cis-regulatory code behind the transcriptional reprogramming

    Novikova, D. D., Cherenkov, P. A., Sizentsova, Y. G. & Mironova, V. V., 1 Jun 2020, In: Genes. 11, 6, p. 1-14 14 p., 634.

    Research output: Contribution to journal › Article › peer-review

  18. Specification and regulation of vascular tissue identity in the Arabidopsis embryo

    Smit, M. E., Llavata-Peris, C. I., Roosjen, M., van Beijnum, H., Novikova, D., Levitsky, V., Sevilem, I., Roszak, P., Slane, D., Jürgens, G., Mironova, V., Brady, S. M. & Weijers, D., 20 Apr 2020, In: Development (Cambridge). 147, 8, 15 p., dev186130.

    Research output: Contribution to journal › Article › peer-review

  19. Fold-change-specific enrichment analysis (FSEA): Quantification of transcriptional response magnitude for functional gene groups

    Wiebe, D. S., Omelyanchuk, N. A., Mukhin, A. M., Grosse, I., Lashin, S. A., Zemlyanskaya, E. V. & Mironova, V. V., 17 Apr 2020, In: Genes. 11, 4, 14 p., 434.

    Research output: Contribution to journal › Article › peer-review

  20. 3D Analysis of Mitosis Distribution Pattern in the Plant Root Tip with iRoCS Toolbox

    Lavrekha, V. V., Pasternak, T., Palme, K. & Mironova, V. V., 1 Jan 2020, In: Methods in molecular biology (Clifton, N.J.). 2094, p. 119-125 7 p.

    Research output: Contribution to journal › Article › peer-review

  21. PlantLayout pipeline to model tissue patterning

    Savina, M. S. & Mironova, V. V., 1 Jan 2020, In: Вавиловский журнал генетики и селекции. 24, 1, p. 102-107 6 p.

    Research output: Contribution to journal › Article › peer-review

  22. 2019

  23. A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package

    Levitsky, V., Zemlyanskaya, E., Oshchepkov, D., Podkolodnaya, O., Ignatieva, E., Grosse, I., Mironova, V. & Merkulova, T., 2 Dec 2019, In: Nucleic Acids Research. 47, 21, p. e139 14 p.

    Research output: Contribution to journal › Article › peer-review

  24. A single-cell view of tissue regeneration in plants

    Mironova, V. & Xu, J., Dec 2019, In: Current Opinion in Plant Biology. 52, p. 149-154 6 p.

    Research output: Contribution to journal › Review article › peer-review

  25. Salicylic Acid Affects Root Meristem Patterning via Auxin Distribution in a Concentration-Dependent Manner

    Pasternak, T., Groot, E. P., Kazantsev, F. V., Teale, W., Omelyanchuk, N., Kovrizhnykh, V., Palme, K. & Mironova, V. V., 1 Jul 2019, In: Plant Physiology. 180, 3, p. 1725-1739 15 p.

    Research output: Contribution to journal › Article › peer-review

  26. Capturing Auxin Response Factors Syntax Using DNA Binding Models

    Stigliani, A., Martin-Arevalillo, R., Lucas, J., Bessy, A., Vinos-Poyo, T., Mironova, V., Vernoux, T., Dumas, R. & Parcy, F., 3 Jun 2019, In: Molecular Plant. 12, 6, p. 822-832 11 p.

    Research output: Contribution to journal › Article › peer-review

  27. 2018

  28. Deciphering auxin-ethylene crosstalk at a systems level

    Zemlyanskaya, E. V., Omelyanchuk, N. A., Ubogoeva, E. V. & Mironova, V. V., 14 Dec 2018, In: International Journal of Molecular Sciences. 19, 12, 15 p., 4060.

    Research output: Contribution to journal › Review article › peer-review

  29. Функциональная аннотация дифференциально экспрессирующихся генов с учетом степени изменения экспрессии (FoldGO)

    Вибе, Д. С., Омельянчук, Н. А. & Миронова, В. В., 6 Dec 2018, Роспатент - Федеральная служба по интеллектуальной собственности, Patent No. 2018665628, Priority date 19 Nov 2018, Priority No. 2018663038

    Research output: Patent › Software registration

  30. Diversity of cis-regulatory elements associated with auxin response in Arabidopsis thaliana

    Cherenkov, P., Novikova, D., Omelyanchuk, N., Levitsky, V., Grosse, I., Weijers, D. & Mironova, V., 4 Jan 2018, In: Journal of Experimental Botany. 69, 2, p. 329-339 11 p.

    Research output: Contribution to journal › Article › peer-review

  31. 2017

  32. 3D analysis of mitosis distribution highlights the longitudinal zonation and diarch symmetry in proliferation activity of the Arabidopsis thaliana root meristem

    Lavrekha, V. V., Pasternak, T., Ivanov, V. B., Palme, K. & Mironova, V. V., 1 Dec 2017, In: Plant Journal. 92, 5, p. 834-845 12 p.

    Research output: Contribution to journal › Article › peer-review

  33. A Sacrifice-for-Survival Mechanism Protects Root Stem Cell Niche from Chilling Stress

    Hong, J. H., Savina, M., Du, J., Devendran, A., Kannivadi Ramakanth, K., Tian, X., Sim, W. S., Mironova, V. V. & Xu, J., 29 Jun 2017, In: Cell. 170, 1, p. 102-113.e14 11 p.

    Research output: Contribution to journal › Article › peer-review

  34. Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots

    Omelyanchuk, N. A., Wiebe, D. S., Novikova, D. D., Levitsky, V. G., Klimova, N., Gorelova, V., Weinholdt, C., Vasiliev, G. V., Zemlyanskaya, E. V., Kolchanov, N. A., Kochetov, A. V., Grosse, I. & Mironova, V. V., 30 May 2017, In: Scientific Reports. 7, 1, p. 2489 11 p., 2489.

    Research output: Contribution to journal › Article › peer-review

  35. Mechanisms regulating ethylene signal transduction in plants

    Zemlyanskaya, E. V., Omelyanchuk, N. A., Ermakov, A. A. & Mironova, V. V., 1 May 2017, In: Russian Journal of Genetics: Applied Research. 7, 3, p. 335-344 10 p.

    Research output: Contribution to journal › Article › peer-review

  36. The Systems Biology of Auxin in Developing Embryos

    Mironova, V., Teale, W., Shahriari, M., Dawson, J. & Palme, K., 1 Mar 2017, In: Trends in Plant Science. 22, 3, p. 225-235 11 p.

    Research output: Contribution to journal › Review article › peer-review

  37. The interplay of chromatin landscape and DNA-binding context suggests distinct modes of EIN3 regulation in Arabidopsis thaliana

    Zemlyanskaya, E. V., Levitsky, V. G., Oshchepkov, D. Y., Grosse, I. & Mironova, V. V., 9 Jan 2017, In: Frontiers in Plant Science. 7, 9 p., 2044.

    Research output: Contribution to journal › Article › peer-review

ID: 3457985