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  1. 2025

  2. Enhanced Binding Site Identification in Protein − Ligand Complexes with a Combined Blind Docking and Dipolar Electron Paramagnetic Resonance Approach

    Kolokolov, M., Sannikova, N., Dementev, S., Podarov, R., Zhdanova, K., Bragina, N., Chubarov, A., Fedin, M. & Krumkacheva, O., 11 Apr 2025, In: Journal of the American Chemical Society. 147, 16, p. 13677-13687 11 p.

    Research output: Contribution to journal › Article › peer-review

  3. Exploring combined spin-labeling approach for structural studies of mRNA in the human ribosome

    Kolokolov, M., Malygin, A., Graifer, D., Meschaninova, M., Vorobyeva, M. A., Fedin, M., Krumkacheva, O. & Bagryanskaya, E., 21 Mar 2025, In: Journal of Chemical Physics. 162, 11

    Research output: Contribution to journal › Article › peer-review

  4. «Green-Ligand» in Metallodrugs Design—Cu(II) Complex with Phytic Acid: Synthetic Approach, EPR-Spectroscopy, and Antimycobacterial Activity

    Koshenskova, K. A., Makarenko, N. V., Dolgushin, F. M., Yambulatov, D. S., Bekker, O. B., Fedin, M. V., Dementev, S. A., Krumkacheva, O. A., Eremenko, I. L. & Lutsenko, I. A., 15 Jan 2025, In: Molecules. 30, 2, 313.

    Research output: Contribution to journal › Article › peer-review

  5. 2023

  6. Revealing light-induced structural shifts in G-quadruplex-porphyrin complexes: a pulsed dipolar EPR study

    Sannikova, N. E., Kolokolov, M. I., Khlynova, T. A., Chubarov, A. S., Polienko, Y. F., Fedin, M. V. & Krumkacheva, O. A., 23 Aug 2023, In: Physical chemistry chemical physics : PCCP. 25, 33, p. 22455-22466 12 p.

    Research output: Contribution to journal › Article › peer-review

  7. Sensitivity optimization in pulse EPR experiments with photo-labels by multiple-echo-integrated dynamical decoupling

    Sannikova, N. E., Melnikov, A. R., Veber, S. L., Krumkacheva, O. A. & Fedin, M. V., 3 May 2023, In: Physical chemistry chemical physics : PCCP. 25, 17, p. 11971-11980 10 p.

    Research output: Contribution to journal › Article › peer-review

  8. 2021

  9. Guest Leakage from ZIF-8 Particles under Drug Delivery Conditions: Quantitative Characterization and Guest-Induced Framework Stabilization

    Poryvaev, A. S., Yazikova, A. A., Polyukhov, D. M., Chinak, O. A., Richter, V. A., Krumkacheva, O. A. & Fedin, M. V., 22 Jul 2021, In: Journal of Physical Chemistry C. 125, 28, p. 15606-15613 8 p.

    Research output: Contribution to journal › Article › peer-review

  10. Reversible Dimerization of Human Serum Albumin

    Chubarov, A., Spitsyna, A., Krumkacheva, O., Mitin, D., Suvorov, D., Tormyshev, V., Fedin, M., Bowman, M. K. & Bagryanskaya, E., Jan 2021, In: Molecules (Basel, Switzerland). 26, 1, 12 p., 108.

    Research output: Contribution to journal › Article › peer-review

  11. 2020

  12. Application of EPR to porphyrin-protein agents for photodynamic therapy

    Sannikova, N. E., Timofeev, I. O., Chubarov, A. S., Lebedeva, N. S., Semeikin, A. S., Kirilyuk, I. A., Tsentalovich, Y. P., Fedin, M. V., Bagryanskaya, E. G. & Krumkacheva, O. A., 1 Oct 2020, In: Journal of Photochemistry and Photobiology B: Biology. 211, 9 p., 112008.

    Research output: Contribution to journal › Article › peer-review

  13. Protein modification by thiolactone homocysteine chemistry: A multifunctionalized human serum albumin theranostic

    Popova, T. V., Krumkacheva, O. A., Burmakova, A. S., Spitsyna, A. S., Zakharova, O. D., Lisitskiy, V. A., Kirilyuk, I. A., Silnikov, V. N., Bowman, M. K., Bagryanskaya, E. G. & Godovikova, T. S., 2 Apr 2020, In: RSC Medicinal Chemistry. 11, 11, p. 1314-1325 12 p.

    Research output: Contribution to journal › Article › peer-review

  14. 2019

  15. Exploring the interactions of short RNAs with the human 40S ribosomal subunit near the mRNA entry site by EPR spectroscopy

    Malygin, A. A., Krumkacheva, O. A., Graifer, D. M., Timofeev, I. O., Ochkasova, A. S., Meschaninova, M. I., Venyaminova, A. G., Fedin, M. V., Bowman, M., Karpova, G. G. & Bagryanskaya, E. G., 16 Dec 2019, In: Nucleic Acids Research. 47, 22, p. 11850-11860 11 p.

    Research output: Contribution to journal › Article › peer-review

  16. Unexpected one-pot formation of the 1H-6a,8a-epiminotri-cyclopenta[a,c,e][8]annulene system from cyclopentanone, ammonia and dimethyl fumarate. Synthesis of highly strained polycyclic nitroxide and EPR study

    Dobrynin, S. A., Kirilyuk, I. A., Gatilov, Y. V., Kuzhelev, A. A., Krumkacheva, O. A., Fedin, M. V., Bowman, M. K. & Bagryanskaya, E. G., 7 Nov 2019, In: Beilstein Journal of Organic Chemistry. 15, p. 2664-2670 7 p.

    Research output: Contribution to journal › Article › peer-review

  17. DNA complexes with human apurinic/apyrimidinic endonuclease 1: structural insights revealed by pulsed dipolar EPR with orthogonal spin labeling

    Krumkacheva, O. A., Shevelev, G. Y., Lomzov, A. A., Dyrkheeva, N. S., Kuzhelev, A. A., Koval, V. V., Tormyshev, V. M., Polienko, Y. F., Fedin, M. V., Pyshnyi, D. V., Lavrik, O. I. & Bagryanskaya, E. G., 5 Sept 2019, In: Nucleic Acids Research. 47, 15, p. 7767-7780 14 p.

    Research output: Contribution to journal › Article › peer-review

  18. Cell-free expression of sodium channel domains for pharmacology studies. Noncanonical spider toxin binding site in the second voltage-sensing domain of human Nav1.4 channel

    Myshkin, M. Y., Männikkö, R., Krumkacheva, O. A., Kulbatskii, D. S., Chugunov, A. O., Berkut, A. A., Paramonov, A. S., Shulepko, M. A., Fedin, M. V., Hanna, M. G., Kullmann, D. M., Bagryanskaya, E. G., Arseniev, A. S., Kirpichnikov, M. P., Lyukmanova, E. N., Vassilevski, A. A. & Shenkarev, Z. O., 4 Sept 2019, In: Frontiers in Pharmacology. 10, 20 p., 953.

    Research output: Contribution to journal › Article › peer-review

  19. Triplet Fullerenes as Prospective Spin Labels for Nanoscale Distance Measurements by Pulsed Dipolar EPR Spectroscopy

    Krumkacheva, O. A., Timofeev, I. O., Politanskaya, L. V., Polienko, Y. F., Tretyakov, E. V., Rogozhnikova, O. Y., Trukhin, D. V., Tormyshev, V. M., Chubarov, A. S., Bagryanskaya, E. G. & Fedin, M. V., 12 Aug 2019, In: Angewandte Chemie - International Edition. 58, 38, p. 13271-13275 5 p.

    Research output: Contribution to journal › Article › peer-review

  20. EPR and DEER Characterization of New Mixed Weakly Coupled Nitroxide Triradicals for Molecular Three-Spin Qubits

    Zaytseva, E., Timofeev, I., Krumkacheva, O., Parkhomenko, D., Mazhukin, D., Sato, K., Matsuoka, H., Takui, T. & Bagryanskaya, E., 1 Aug 2019, In: Applied Magnetic Resonance. 50, 8, p. 967-976 10 p.

    Research output: Contribution to journal › Article › peer-review

  21. Trityl-Aryl-Nitroxide-Based Genuinely g-Engineered Biradicals, As Studied by Dynamic Nuclear Polarization, Multifrequency ESR/ENDOR, Arbitrary Wave Generator Pulse Microwave Waveform Spectroscopy, and Quantum Chemical Calculations

    Sato, K., Hirao, R., Timofeev, I., Krumkacheva, O., Zaytseva, E., Rogozhnikova, O., Tormyshev, V. M., Trukhin, D., Bagryanskaya, E., Gutmann, T., Klimavicius, V., Buntkowsky, G., Sugisaki, K., Nakazawa, S., Matsuoka, H., Toyota, K., Shiomi, D. & Takui, T., 27 Jul 2019, In: Journal of Physical Chemistry A. 123, 34, p. 7507-7517 11 p.

    Research output: Contribution to journal › Article › peer-review

  22. 2018

  23. High-frequency pulsed electron-electron double resonance spectroscopy on DNA duplexes using trityl tags and shaped microwave pulses

    Kuzhelev, A., Akhmetzyanov, D., Denysenkov, V., Shevelev, G., Krumkacheva, O., Bagryanskaya, E. & Prisner, T., 7 Nov 2018, In: Physical Chemistry Chemical Physics. 20, 41, p. 26140-26144 5 p.

    Research output: Contribution to journal › Article › peer-review

  24. Electron-Spin Relaxation of Triarylmethyl Radicals in Glassy Trehalose

    Kuzhelev, A. A., Krumkacheva, O. A., Timofeev, I. O., Tormyshev, V. M., Fedin, M. V. & Bagryanskaya, E. G., 1 Nov 2018, In: Applied Magnetic Resonance. 49, 11, p. 1171-1180 10 p.

    Research output: Contribution to journal › Article › peer-review

  25. Pulse EPR of Triarylmethyl Probes: A New Approach for the Investigation of Molecular Motions in Soft Matter

    Kuzhelev, A. A., Krumkacheva, O. A., Ivanov, M. Y., Prikhod'Ko, S. A., Adonin, N. Y., Tormyshev, V. M., Bowman, M. K., Fedin, M. V. & Bagryanskaya, E. G., 13 Sept 2018, In: Journal of Physical Chemistry B. 122, 36, p. 8624-8630 7 p.

    Research output: Contribution to journal › Article › peer-review

  26. Room-temperature distance measurements using RIDME and the orthogonal spin labels trityl/nitroxide

    Kuzhelev, A. A., Krumkacheva, O. A., Shevelev, G. Y., Yulikov, M., Fedin, M. V. & Bagryanskaya, E. G., 21 Apr 2018, In: Physical Chemistry Chemical Physics. 20, 15, p. 10224-10230 7 p.

    Research output: Contribution to journal › Article › peer-review

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