1. 2021
  2. DNA glycosylases for 8-oxoguanine repair in Staphylococcus aureus

    Endutkin, A. V., Panferova, E. P., Barmatov, A. E. & Zharkov, D. O., Sept 2021, In: DNA Repair. 105, p. 103160 103160.

    Research output: Contribution to journalArticlepeer-review

  3. Mild phenotype of knockouts of the major apurinic/apyrimidinic endonuclease APEX1 in a non-cancer human cell line

    Kim, D. V., Kulishova, L. M., Torgasheva, N. A., Melentyev, V. S., Dianov, G. L., Medvedev, S. P., Zakian, S. M. & Zharkov, D. O., Sept 2021, In: PLoS ONE. 16, 9 September, e0257473.

    Research output: Contribution to journalArticlepeer-review

  4. Репарация ДНК: за пределами модельных микроорганизмов

    Жарков, Д. О., Sept 2021, p. 33. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  5. Структура новой атипичной ДНК-гликозилазы суперсемейства H2TH из Bacteroides thetaiotaomicron

    Юдкина, А. В., Гарсиа-Диаз, М. & Жарков, Д. О., Sept 2021, p. 286-287. 2 p.

    Research output: Contribution to conferenceAbstractpeer-review

  6. Урацил-ДНК-гликозилаза ортопоксвирусов как мишень для противовирусной терапии

    Дятлова, Е. А. & Жарков, Д. О., Sept 2021, p. 174-175. 2 p.

    Research output: Contribution to conferenceAbstractpeer-review

  7. Mild phenotype of knockouts of the major apurinic/apyrimidinic endonuclease APEX1 in a noncancer human cell line

    Ким, Д. В., Кулишова, Л. М., Торгашева, Н. А. & Жарков, Д. О., Aug 2021, p. 92. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  8. Evolutionary Origins of DNA Repair Pathways: Role of Oxygen Catastrophe in the Emergence of DNA Glycosylases

    Prorok, P., Grin, I. R., Matkarimov, B. T., Ishchenko, A. A., Laval, J., Zharkov, D. O. & Saparbaev, M., Jul 2021, In: Cells. 10, 7, 1591.

    Research output: Contribution to journalReview articlepeer-review

  9. Miscoding properties of abasic site adducts with methoxyamine, an antitumor base excision repair inhibitor

    Yudkina, A., Shilkin, E., Boldinova, E., Makarova, A. & Zharkov, D., Jul 2021, In: FEBS Open Bio. 11, p. 87-87 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  10. Novel approach to the delivery into the cells and light-activation of the guide RNA for the genome editing CRISPR/Cas9 system

    Яковлев, А., Ахметова, Е., Данилин, Н. А., Семиколенова, О. А., Вохтанцев, И. П., Ким, Д. В., Жарков, Д. О., Веньяминова, А. Г. & Новопашина, Д. С., Jul 2021, p. 122. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  11. GO-система: путь репарации ДНК для борьбы с окислительными повреждениями

    Endutkin, A. V. & Zharkov, D. O., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 223-242 20 p., 5.

    Research output: Contribution to journalReview articlepeer-review

  12. Изучение свойств рекомбинантной эндонуклеазы IV Mycobacterium tuberculosis

    Dymova, M. A., Endutkin, A. V., Polunovsky, V. V., Zakabunin, A. I., Khrapov, E. A., Torgasheva, N. A., Yudkina, A. V., Mechetin, G. V., Filipenko, M. L. & Zharkov, D. O., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 258-268 11 p., 7.

    Research output: Contribution to journalArticlepeer-review

  13. Матричные свойства 5-метил-2'-дезоксицитидина и 5-гидроксиметил-2'-дезоксицитидина в реакциях с транслезионными и репаратичными ДНК-полимеразами человека

    Shilkin, E. S., Petrova, D. V., Poltorachenko, V. A., Boldinova, E. O., Zharkov, D. O. & Makarova, A. V., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 305-311 7 p., 11.

    Research output: Contribution to journalArticlepeer-review

  14. Characterization of Recombinant Endonuclease IV from Mycobacterium tuberculosis

    Dymova, M. A., Endutkin, A. V., Polunovsky, V. V., Zakabunin, A. I., Khrapov, E. A., Torgasheva, N. A., Yudkina, A. V., Mechetin, G. V., Filipenko, M. L. & Zharkov, D. O., Mar 2021, In: Molecular Biology. 55, 2, p. 225-233 9 p.

    Research output: Contribution to journalArticlepeer-review

  15. GO System, a DNA Repair Pathway to Cope with Oxidative Damage

    Endutkin, A. V. & Zharkov, D. O., Mar 2021, In: Molecular Biology. 55, 2, p. 193-210 18 p.

    Research output: Contribution to journalReview articlepeer-review

  16. Template Properties of 5-Methyl-2'-Deoxycytidine and 5-Hydroxymethyl-2'-Deoxycytidine in Reactions with Human Translesion and Reparative DNA Polymerases

    Shilkin, E. S., Petrova, D. V., Poltorachenko, V. A., Boldinova, E. O., Zharkov, D. O. & Makarova, A. V., Mar 2021, In: Molecular Biology. 55, 2, p. 267-272 6 p.

    Research output: Contribution to journalArticlepeer-review

  17. Активность ДНК-полимераз х-семейства человека на метилированных ДНК-матрицах

    Хрячкова, А. Ю., Шилкин, Е. С., Петрова, Д. В., Жарков, Д. О. & Макарова, А. В., Feb 2021, p. 65. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  18. Ответ клеток аденокарциномы легких человека с нокаутом гена PRIMPOL на повреждения ДНК

    Громова, А. С., Болдинова, Е. О., Ким, Д. В., Чупров-Неточин, Р. Н., Жарков, Д. О. & Макарова, А. В., Feb 2021, p. 50. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  19. Molecular dynamics approach to identification of new OGG1 cancer-associated somatic variants with impaired activity

    Popov, A. V., Endutkin, A. V., Yatsenko, D. D., Yudkina, A. V., Barmatov, A. E., Makasheva, K. A., Raspopova, D. Y., Diatlova, E. A. & Zharkov, D. O., 1 Jan 2021, In: Journal of Biological Chemistry. 296, 100229.

    Research output: Contribution to journalArticlepeer-review

  20. Boron-containing nucleosides as tools for boron-neutron capture therapy

    Zharkov, D. O., Yudkina, A., Riesebeck, T., Loshchenova, P. S., Mostovich, E. A. & Dianov, G. L., 2021, In: American journal of cancer research. 11, 10, p. 4668-4682 15 p.

    Research output: Contribution to journalReview articlepeer-review

  21. 2020
  22. Displacement of Slow-Turnover DNA Glycosylases by Molecular Traffic on DNA

    Yudkina, A. V., Endutkin, A. V., Diatlova, E. A., Moor, N. A., Vokhtantsev, I. P., Grin, I. R. & Zharkov, D. O., Aug 2020, In: Genes. 11, 8, p. 1-21 21 p., 866.

    Research output: Contribution to journalArticlepeer-review

  23. Protein Engineering of DNA-Dependent Enzymes

    Yudkina, A. V. & Zharkov, D. O., 8 May 2020, Mechanisms of Genome Protection and Repair. Zharkov, D. O. (ed.). Springer, Vol. 1241. p. 19-33 15 p. (Advances in experimental medicine and biology).

    Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

  24. Inhibitors of DNA glycosylases as prospective drugs

    Mechetin, G. V., Endutkin, A. V., Diatlova, E. A. & Zharkov, D. O., 28 Apr 2020, In: International Journal of Molecular Sciences. 21, 9, 30 p., 3118.

    Research output: Contribution to journalReview articlepeer-review

  25. Reading Targeted DNA Damage in the Active Demethylation Pathway: Role of Accessory Domains of Eukaryotic AP Endonucleases and Thymine-DNA Glycosylases

    Popov, A. V., Grin, I. R., Dvornikova, A. P., Matkarimov, B. T., Groisman, R., Saparbaev, M. & Zharkov, D. O., 13 Mar 2020, In: Journal of Molecular Biology. 432, 6, p. 1747-1768 22 p.

    Research output: Contribution to journalReview articlepeer-review

  26. Catalytically Competent Conformation of the Active Site of Human 8-Oxoguanine-DNA Glycosylase

    Popov, A. V., Yudkina, A. V., Vorobjev, Y. N. & Zharkov, D. O., 17 Feb 2020, In: Biochemistry (Moscow). 85, 2, p. 192-204 13 p.

    Research output: Contribution to journalArticlepeer-review

  27. Preface

    Zharkov, D. O., 1 Jan 2020, In: Advances in experimental medicine and biology. 1241, p. v

    Research output: Contribution to journalEditorialpeer-review

  28. Mechanistic insight into the role of Poly(ADP-ribosyl)ation in DNA topology modulation and response to DNA damage

    Matkarimov, B. T., Zharkov, D. O. & Saparbaev, M. K., Jan 2020, In: Mutagenesis. 35, 1, p. 107-118 12 p.

    Research output: Contribution to journalReview articlepeer-review

  29. Requirements for DNA bubble structure for efficient cleavage by helix-two-turn-helix DNA glycosylases

    Makasheva, K. A., Endutkin, A. V. & Zharkov, D. O., Jan 2020, In: Mutagenesis. 35, 1, p. 119-128 10 p.

    Research output: Contribution to journalArticlepeer-review

  30. Activity of DNA glycosylases on non-canonical DNA substrates

    Дятлова, Е. А. & Жарков, Д. О., 2020, p. 568. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  31. Chapter 8: Substrate specificities of DNA glycosylases in vitro and in vivo: Substrate specificities of DNA glycosylases in vitro and in vivo

    Ендуткин, А. В. & Жарков, Д. О., 2020, DNA Damage, DNA Repair and Disease: Volume 1. Dizdaroglu, M. & Lloyd, R. S. (eds.). London: Royal Society of Chemistry, Vol. 1. p. 175-203 29 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

  32. Preface

    Zharkov, D. O., 2020, MECHANISMS OF GENOME PROTECTION AND REPAIR. Zharkov, DO. (ed.). Springer International Publishing AG, p. V-V 1 p. (Advances in Experimental Medicine and Biology; vol. 1241).

    Research output: Chapter in Book/Report/Conference proceedingForeword/postscriptResearchpeer-review

  33. Методы редактирования генов и геномов

    Аббат, А. В., Александрушкина, Н. А., Андреенков, О. В., Артюхов, А. С., Байрамова, Э. М., Балацкий, А. В., Березиков, Е. В., Василенко, Ю. С., Васильев, А. В., Васильев, П. А., Волкова, Е. И., Воротеляк, Е. А., Вохтанцев, И. П., Вударски, Я., Вяткин, Ю. В., Георгиев, П. Г., Герасимова, С. В., Гершович, П. М., Гольцова, А. С., Гущин, Д. Ю., & 60 othersДавлетшина, Г. И., Дашинимаев, Э. Б., Дейнеко, Е. В., Демаков, С. А., Дианов, Г. Л., Дыйканов, Д. Т., Евсеева, М. Н., Егорова, А. А., Елисафенко, Е. А., Ендуткин, А. В., Жарков, Д. О., Живень, М. К., Журавлев, Е. С., Загорская, А. А., Закиян, С. М., Захарова, И. С., Зотова, А. А., Иванова, К. А., Карагуяр, М. Н., Карпов, В. Л., Коваленко, В. Р., Кулебякин, К. Ю., Кулишова, Л. М., Лактионов, П. П., Мазуров, Д. В., Макаревич, П. И., Максименко, О. Г., Маланханова, Т. Б., Малахова, А. А., Маренкова, Т. В., Матвеева, А. М., Медведев, С. П., Мещерякова, Н. В., Пермякова, Н. В., Прокофьев, А. В., Рождественский, Т. С., Романов, С. Е., Ростовцева, А. И., Рубцов, Ю. П., Рысенкова, К. Д., Семина, Е. В., Сидорчук, Ю. В., Скрябин, Б. В., Скрябина, М. Н., Смирнова, А. М., Сорокин, М. А., Степанов, Г. А., Стуканев, В. К., Торгашева, Н. А., Тюрин-Кузьмин, П. А., Устьянцева, Е. И., Устьянцев, К. В., Чичерин, И. В., Шарипова, Д. В., Шевченко, А. И., Шепелев, М. В., Шерстюк, В. В., Шмакова, А. А., Щепетов, Д. М. & Юрлова, Е. В., 2020, Новосибирск: ФГУП "Издательство СО РАН". 550 p.

    Research output: Book/ReportBookResearchpeer-review

  34. Получение модифицированных ДНК-субстратов для исследования механизма действия нуклеаз геномного редактирования

    Вохтанцев, И. П., Ендуткин, А. В., Кулишова, Л. М., Торгашева, Н. А., Дианов, Г. Л. & Жарков, Д. О., 2020, Методы редактирования генов и геномов. Закиян, С. М., Медведев, С. П., Дементьева, Е. В. & Власов, В. В. (eds.). Новосибирск: ФГУП "Издательство СО РАН", p. 485-493 9 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

  35. 2019
  36. Transient protein–protein complexes in base excision repair

    Endutkin, A. V., Yudkina, A. V., Sidorenko, V. S. & Zharkov, D. O., 22 Nov 2019, In: Journal of Biomolecular Structure and Dynamics. 37, 17, p. 4407-4418 12 p.

    Research output: Contribution to journalReview articlepeer-review

  37. Platinum Polyoxoniobates Form Adducts with DNA

    Yudkina, A. V., Sokolov, M. N., Abramov, P. A., Grin, I. R. & Zharkov, D. O., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 641-646 6 p.

    Research output: Contribution to journalArticlepeer-review

  38. Relative Efficiency of Recognition of 5-Methylcytosine and 5-Hydroxymethylcytosine by Methyl-Dependent DNA Endonuclease GlaI

    Petrova, D. V., Naumenko, M. B., Khantakova, D. V., Grin, I. R. & Zharkov, D. O., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 625-629 5 p.

    Research output: Contribution to journalArticlepeer-review

  39. Mechanism of stimulation of DNA binding of the transcription factors by human apurinic/apyrimidinic endonuclease 1, APE1

    Bazlekowa-Karaban, M., Prorok, P., Baconnais, S., Taipakova, S., Akishev, Z., Zembrzuska, D., Popov, A. V., Endutkin, A. V., Groisman, R., Ishchenko, A. A., Matkarimov, B. T., Bissenbaev, A., Le Cam, E., Zharkov, D. O., Tudek, B. & Saparbaev, M., 1 Oct 2019, In: DNA Repair. 82, p. 102698 18 p., 102698.

    Research output: Contribution to journalArticlepeer-review

  40. Isoforms of base excision repair enzymes produced by alternative splicing

    Boldinova, E. O., Khairullin, R. F., Makarova, A. V. & Zharkov, D. O., 3 Jul 2019, In: International Journal of Molecular Sciences. 20, 13, 22 p., 3279.

    Research output: Contribution to journalReview articlepeer-review

  41. DNA lesions against genome editing: how Cas9 cleaves the substrates with damages

    Vokhtantsev, I. P., Endutkin, A. V., Kulishova, L. M. & Zharkov, O., Jul 2019, In: FEBS Open Bio. 9, p. 397-397 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  42. Photocleavable guide RNAs for controllable genome editing with CRISPR/Cas9 system

    Novopashina, D., Khabardina, E., Vokhtantsev, I., Kim, D., Venyaminova, A. & Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 400-400 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  43. Structural and biochemical insights of new atypical Fpg/Nei DNA-glycosylases

    Yudkina, A., Garcia-Diaz, M. & Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 252-252 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  44. The role of transient protein-protein interactions in base excision repair

    Zharkov, D., Jul 2019, In: FEBS Open Bio. 9, p. 254-254 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  45. Critical Sites of DNA Backbone Integrity for Damaged Base Removal by Formamidopyrimidine-DNA Glycosylase

    Endutkin, A. V. & Zharkov, D. O., 18 Jun 2019, In: Biochemistry. 58, 24, p. 2740-2749 10 p.

    Research output: Contribution to journalArticlepeer-review

  46. Reading and misreading 8-oxoguanine, a paradigmatic ambiguous nucleobase

    Yudkina, A. V., Shilkin, E. S., Endutkin, A. V., Makarova, A. V. & Zharkov, D. O., 1 May 2019, In: Crystals. 9, 5, 31 p., 269.

    Research output: Contribution to journalArticlepeer-review

  47. Conformational Dynamics of Damage Processing by Human DNA Glycosylase NEIL1

    Kladova, O. A., Grin, I. R., Fedorova, O. S., Kuznetsov, N. A. & Zharkov, D. O., 15 Mar 2019, In: Journal of Molecular Biology. 431, 6, p. 1098-1112 15 p.

    Research output: Contribution to journalArticlepeer-review

  48. Base Excision DNA Repair Deficient Cells: From Disease Models to Genotoxicity Sensors

    Kim, D. V., Makarova, A. V., Miftakhova, R. R. & Zharkov, D. O., 1 Jan 2019, In: Current Pharmaceutical Design. 25, 3, p. 298-312 15 p.

    Research output: Contribution to journalReview articlepeer-review

  49. abstract OR-3: Fleeting ensembles: Transient protein-protein interactions in DNA repair

    Жарков, Д. О., 2019, In: International Journal of Biomedicine. 9, S1, p. 6-7 2 p.

    Research output: Contribution to journalConference articlepeer-review

  50. 2018
  51. Aberrant repair initiated by the adenine-DNA glycosylase does not play a role in UV-induced mutagenesis in Escherichia coli

    Zutterling, C., Mursalimov, A., Talhaoui, I., Koshenov, Z., Akishev, Z., Bissenbaev, A. K., Mazon, G., Geacintov, N. E., Gasparutto, D., Groisman, R., Zharkov, D. O., Matkarimov, B. T. & Saparbaev, M., 5 Dec 2018, In: PeerJ. 6, 12, 23 p., 6029.

    Research output: Contribution to journalArticlepeer-review

  52. Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation

    Gruber, D. R., Toner, J. J., Miears, H. L., Shernyukov, A. V., Kiryutin, A. S., Lomzov, A. A., Endutkin, A. V., Grin, I. R., Petrova, D. V., Kupryushkin, M. S., Yurkovskaya, A. V., Johnson, E. C., Okon, M., Bagryanskaya, E. G., Zharkov, D. O. & Smirnov, S. L., 16 Nov 2018, In: Nucleic Acids Research. 46, 20, p. 10827-10839 13 p.

    Research output: Contribution to journalArticlepeer-review

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