1. 2024
  2. Mutation in of palindromic sequences of coronavirus genome

    Mitić, N. S., Kapunac, S., Beljanski, M. V., Дергилев, А. И. & Орлов, Ю. Л., Aug 2024, Bioinformatics of Genome Regulation and Structure Systems Biology (BGRS/SB-2024): The 14th International Multiconference (05-10 August 2024, Novosibirsk, Russia). Новосибирск: Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, p. 2196-2197 2 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

  3. SmartCrop cognitive platform: modules for automatic knowledge extraction from scientific publications, patents and factual databases for reconstruction and analysis of gene networks of stress response in rice and wheat

    Иванисенко, В. А., Деменков, П. С., Иванисенко, Т. В., Антропова, Е. А., Волянская, А. Р., Зубаирова, У. С., Макарова, А-Л. А., Орлов, Ю. Л. & Chen, M., Aug 2024, Bioinformatics of Genome Regulation and Structure Systems Biology (BGRS/SB-2024): The 14th International Multiconference (05-10 August 2024, Novosibirsk, Russia). Новосибирск: Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences, p. 2188-2190 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

  4. A Principal Components Analysis and Functional Annotation of Differentially Expressed Genes in Brain Regions of Gray Rats Selected for Tame or Aggressive Behavior

    Chadaeva, I., Kozhemyakina, R., Shikhevich, S., Bogomolov, A., Kondratyuk, E., Ощепков, Д. Ю., Orlov, Y. L. & Markel, A. L., May 2024, In: International Journal of Molecular Sciences. 25, 9, 16 p., 4613.

    Research output: Contribution to journalArticlepeer-review

  5. Unveiling the methionine cycle: a key metabolic signature and NR4A2 as a methionine-responsive oncogene in esophageal squamous cell carcinoma

    Jin, X., Liu, L., Liu, D., Wu, J., Wang, C., Wang, S., Wang, F., Yu, G., Jin, X., Xue, Y. W., Jiang, D., Ni, Y., Yang, X., Wang, M. S., Wang, Z. W., Orlov, Y. L., Jia, W., Melino, G., Liu, J. B. & Chen, W. L., May 2024, In: Cell Death and Differentiation. 31, 5, p. 558-573 16 p.

    Research output: Contribution to journalArticlepeer-review

  6. Computational identification of promising genetic markers associated with molecular mechanisms of reduced rice resistance to Rhizoctonia solani under excess nitrogen fertilization using gene network reconstruction and analysis methods

    Antropova, E. A., Volyanskaya, A. R., Adamovskaya, A. V., Demenkov, P. S., Yatsyk, I. V., Ivanisenko, T. V., Orlov, Y. L., Haoyu, C., Chen, M. & Ivanisenko, V. A., 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 960-973 14 p.

    Research output: Contribution to journalArticlepeer-review

  7. 2023
  8. Reconstruction and analysis of the gene regulatory network for cell wall function in Arabidopsis thaliana L. leaves in response to water deficit

    Volyanskaya, A. R., Antropova, E. A., Zubairova, U. S., Demenkov, P. S., Venzel, A. S., Orlov, Y. L., Makarova, A. A., Ivanisenko, T. V., Gorshkova, T. A., Aglyamova, A. R., Kolchanov, N. A., Chen, M. & Ivanisenko, V. A., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1031-1041 11 p.

    Research output: Contribution to journalArticlepeer-review

  9. BGRS: bioinformatics of genome regulation and data integration

    Orlov, Y. L., Chen, M., Kolchanov, N. A. & Hofestädt, R., 1 Sept 2023, In: Journal of integrative bioinformatics. 20, 3, 20230032.

    Research output: Contribution to journalArticlepeer-review

  10. Research Topics of the Bioinformatics of Gene Regulation

    Orlov, Y. L., Anashkina, A. A., Kumeiko, V. V., Chen, M. & Kolchanov, N. A., 15 May 2023, In: International Journal of Molecular Sciences. 24, 10, 8774.

    Research output: Contribution to journalArticlepeer-review

  11. 2022
  12. Editorial: High-Throughput Sequencing-Based Investigation of Chronic Disease Markers and Mechanisms

    Orlov, Y. L., Chen, W. L., Sekacheva, M. I., Cai, G. & Li, H., 21 Jun 2022, In: Frontiers in Genetics. 13, 922206.

    Research output: Contribution to journalEditorialpeer-review

  13. Editorial: Association Between Individuals’ Genomic Ancestry and Variation in Disease Susceptibility

    Das, R., Tatarinova, T. V., Galieva, E. R. & Orlov, Y. L., 2 Feb 2022, In: Frontiers in Genetics. 13, 831320.

    Research output: Contribution to journalEditorialpeer-review

  14. 2021
  15. Statistical estimates of multiple transcription factors binding in the model plant genomes based on ChIP-seq data

    Dergilev, A. I., Orlova, N. G., Dobrovolskaya, O. B. & Orlov, Y. L., 21 Dec 2021, In: Journal of integrative bioinformatics. 19, 1, 12 p.

    Research output: Contribution to journalArticlepeer-review

  16. Editorial: Bioinformatics of Genome Regulation, Volume I

    Orlov, Y. L., Tatarinova, T. V., Oparina, N. Y., Galieva, E. R. & Baranova, A. V., 6 Dec 2021, In: Frontiers in Genetics. 12, 803273.

    Research output: Contribution to journalEditorialpeer-review

  17. Glioblastoma gene network reconstruction and ontology analysis by online bioinformatics tools

    Gubanova, N. V., Orlova, N. G., Dergilev, A. I., Oparina, N. Y. & Orlov, Y. L., 16 Nov 2021, In: Journal of integrative bioinformatics. 18, 4

    Research output: Contribution to journalArticlepeer-review

  18. Bioinformatics applications to reveal molecular mechanisms of gene expression regulation in model organisms

    Orlov, Y. L., Tatarinova, T. V. & Anashkina, A. A., 1 Nov 2021, In: International Journal of Molecular Sciences. 22, 21, 11973.

    Research output: Contribution to journalEditorialpeer-review

  19. Recent trends in cancer genomics and bioinformatics tools development

    Anashkina, A. A., Leberfarb, E. Y. & Orlov, Y. L., 1 Nov 2021, In: International Journal of Molecular Sciences. 22, 22, 12146.

    Research output: Contribution to journalEditorialpeer-review

  20. Life: Computational genomics applications in life sciences

    Orlov, Y. L. & Anashkina, A. A., Nov 2021, In: Life. 11, 11, 1211.

    Research output: Contribution to journalEditorialpeer-review

  21. Autophagy genes expression profiling in secondary glioblastoma cells transcriptome

    Gubanova, N., Bragin, A., Vasiliev, G., Babenko, V., Ponomarenko, M. & Orlov, Y., Sept 2021, In: Cell death discovery. 7, SUPPL 1, p. 5-5 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  22. Novel ChIP-seq simulating program with superior versatility: isChIP

    Subkhankulova, T., Naumenko, F., Tolmachov, O. E. & Orlov, Y. L., 1 Jul 2021, In: Briefings in Bioinformatics. 22, 4, bbaa352.

    Research output: Contribution to journalReview articlepeer-review

  23. Biodistribution of10 b in glioma orthotopic xenograft mouse model after injection of l-para-boronophenylalanine and sodium borocaptate

    Gubanova, N. V., Tsygankova, A. R., Zavjalov, E. L., Romashchenko, A. V. & Orlov, Y. L., Jul 2021, In: Biomedicines. 9, 7, 722.

    Research output: Contribution to journalArticlepeer-review

  24. Полиморфизм вариантов гена N-ацетилтрансферазы 2 (NAT2) и анализ генной сети

    Tiis, R. P., Osipova, L. P., Galieva, E. R., Lichman, D. V., Voronina, E. N., Melikhova, A. V., Orlov, Y. L. & Filipenko, M. L., May 2021, In: Biomeditsinskaya Khimiya. 67, 3, p. 213-221 9 p., 4.

    Research output: Contribution to journalArticlepeer-review

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