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  1. 2026

  2. Insertion-Site Proximity to AAV Inverted Terminal Repeats Increases Plasmid Recombination

    Makarenko, M., Semicheva, D. & Fishman, V., 26 Aug 2026, In: International Journal of Molecular Sciences. 27, 17, 16 p., 7630.

    Research output: Contribution to journal › Article › peer-review

  3. 2025

  4. An Exceptionally Complex Chromosome Rearrangement in the Great Tit (Parus major): Genetic Composition, Meiotic Behavior and Population Frequency

    Torgasheva, A., Malinovskaya, L., Nuriddinov, M., Zadesenets, K. S., Gridina, M., Nurislamov, A., Korableva, S., Pristyazhnyuk, I., Proskuryakova, A., Tishakova, K. V., Rubtsov, N. B., Fishman, V. S. & Borodin, P., 27 Dec 2025, In: Cells. 15, 1, 24 p., 52.

    Research output: Contribution to journal › Article › peer-review

  5. Chromatin landscape, transcriptomic and ChIP-seq profiling of Anopheles stephensi MSQ43 cell line

    Lukyanchikova, V., Nuriddinov, M., Khabarova, A., Gridina, M., Popov, A., Belokopytova, P., Sharakhov, I. V. & Fishman, V., 26 Sept 2025, In: Scientific Data. 12, 1, p. 1566

    Research output: Contribution to journal › Article › peer-review

  6. Direction and modality of transcription changes caused by TAD boundary disruption in Slc29a3/Unc5b locus depends on tissue-specific epigenetic context

    Salnikov, P., Belokopytova, P., Yan, A., Viesná, E., Korablev, A., Serova, I., Lukyanchikova, V., Stepanchuk, Y., Torgunakov, N., Tikhomirov, S. & Fishman, V., 12 Aug 2025, In: Epigenetics & chromatin. 18, 1, 55.

    Research output: Contribution to journal › Article › peer-review

  7. DNA and Histone Modifications Identify a Putative Controlling Element (CE) on the X Chromosome of Sciara coprophila

    Posukh, O. V., Shloma, V. V., Skrypnik, P. A., Maksimov, D. A., Antoshina, P. A., Kalashnikova, D. A., Nurislamov, A., Lukyanchikova, V. A., Torgunakov, N., Battulin, N. R., Fishman, V. S., Vyatkin, Y. V., Smelova, A. A., Romanov, S. E., Laktionov, P. P., Valishayev, D., Belyakin, S. N. & Singh, P. B., 12 Aug 2025, In: Cells. 14, 16, 16 p., 1243.

    Research output: Contribution to journal › Article › peer-review

  8. Charm is a flexible pipeline to simulate chromosomal rearrangements on Hi-C-like data

    Nuriddinov, M., Belokopytova, P. & Fishman, V., Jun 2025, In: NAR Genomics and Bioinformatics. 7, 2, p. lqaf081 10 p., lqaf081.

    Research output: Contribution to journal › Article › peer-review

  9. Combining chromosome conformation capture and exome sequencing for simultaneous detection of structural and single-nucleotide variants

    Gridina, M., Lagunov, T., Belokopytova, P., Torgunakov, N., Nuriddinov, M., Nurislamov, A., Nazarenko, L. P., Kashevarova, A. A., Lopatkina, M. E., Vasilyev, S., Zuev, A., Belyaeva, E. O., Salyukova, O. A., Cheremnykh, A. D., Sukhanova, N. N., Minzhenkova, M. E., Markova, Z. G., Demina, N. A., Stepanchuk, Y., Khabarova, A., & 22 othersYan, A., Valeev, E., Koksharova, G., Grigor’eva, E. V., Kokh, N., Lukjanova, T., Maximova, Y., Musatova, E., Shabanova, E., Kechin, A., Khrapov, E., Boyarskih, U., Ryzhkova, O., Suntsova, M., Matrosova, A., Karoli, M., Manakhov, A., Filipenko, M., Rogaev, E., Shilova, N. V., Lebedev, I. N. & Fishman, V., 7 May 2025, In: Genome Medicine. 17, 1, p. 47 47.

    Research output: Contribution to journal › Article › peer-review

  10. 2024

  11. Кандидатные прогностические и предиктивные транслокации высоко агрессивных форм мозговых опухолей

    Фишман, В. С. & Гридина, М. М., 10 Dec 2024, Редакционно-издательский центр НГУ, Patent No. 118, 10 Dec 2024, Priority date 10 Dec 2024

    Research output: Patent › Know-how registration

  12. Structural variants in the Epb41l4a locus: TAD disruption and Nrep gene misregulation as hypothetical drivers of neurodevelopmental outcomes

    Salnikov, P., Korablev, A., Serova, I., Belokopytova, P., Yan, A., Stepanchuk, Y., Tikhomirov, S. & Fishman, V., Dec 2024, In: Scientific Reports. 14, 1, 8 p., 5288.

    Research output: Contribution to journal › Article › peer-review

  13. Сравнительный анализ первичной структуры и получение рекомбинантной поли(ADP-рибоза)полимеразы 1 долгоживущего Heterocephalus glaber

    Naumenko, K. N., Nurislamov, A. R., Nazarov, K. D., Fishman, V. S., Popov, A. A., Petruseva, I. O., Evdokimov, A. N. & Lavrik, O. I., Nov 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 7, p. 688-695 8 p., 2.

    Research output: Contribution to journal › Article › peer-review

  14. A HGF Mutation in the Familial Case of Primary Lymphedema: A Report

    Koksharova, G., Kokh, N., Gridina, M., Khapaev, R., Nimaev, V. & Fishman, V., May 2024, In: International Journal of Molecular Sciences. 25, 10, 5464.

    Research output: Contribution to journal › Article › peer-review

  15. Modification of the Hi-C Technology for Molecular Genetic Analysis of Formalin-Fixed Paraffin-Embedded Sections of Tumor Tissues

    Gridina, M. M., Stepanchuk, Y. K., Nurridinov, M. A., Lagunov, T. A., Torgunakov, N. Y., Shadsky, A. A., Ryabova, A. I., Vasiliev, N. V., Vtorushin, S. V., Gerashchenko, T. S., Denisov, E. V., Travin, M. A., Korolev, M. A. & Fishman, V. S., Apr 2024, In: Biochemistry (Moscow). 89, 4, p. 637-652 16 p.

    Research output: Contribution to journal › Article › peer-review

  16. Towards Development of the 4C-Based Method Detecting Interactions of Plasmid DNA with Host Genome

    Yan, A. P., Salnikov, P. A., Gridina, M. M., Belokopytova, P. S. & Fishman, V. S., Apr 2024, In: Biochemistry (Moscow). 89, 4, p. 653-662 10 p.

    Research output: Contribution to journal › Article › peer-review

  17. Differential gene expression in degenerative lumbar discs from the Russian disc degeneration study (RuDDS) biobank

    Тяпкин, А. В., Иванов, А. А., Леонова, О. Н., Krutko, A. V., Peleganchuk, A. V., Фишман, В. С., Елгаева, Е. Е. & Цепилов, Я. А., 2024, In: European journal of human genetics. 32, S2, p. 996-997 2 p., EP06.052.

    Research output: Contribution to journal › Article › peer-review

  18. Разработка метода детекции пространственных контактов плазмидной ДНК с геномом в клетках человека

    Ян, А. П., Сальников, П. А., Гридина, М. М., Белокопытова, П. С. & Фишман, В. С., 2024, In: Биохимия. 89, 4, p. 612-622 11 p.

    Research output: Contribution to journal › Article › peer-review

  19. 2023

  20. Expanding the list of sequence-agnostic enzymes for chromatin conformation capture assays with S1 nuclease

    Maria, G., Andrey, P., Artem, S., Nikita, T., Andrey, K., Evgeny, K., Oxana, R., Maxim, F. & Veniamin, F., 11 Dec 2023, In: Epigenetics & chromatin. 16, 1, 13 p., 48.

    Research output: Contribution to journal › Article › peer-review

  21. Lampbrush chromosome studies in the post-genomic era

    Krasikova, A., Fishman, V. & Kulikova, T., May 2023, In: BioEssays. 45, 5, 7 p., e2200250.

    Research output: Contribution to journal › Article › peer-review

  22. Cell type-specific interpretation of noncoding variants using deep learning-based methods

    Sindeeva, M., Chekanov, N., Avetisian, M., Shashkova, T. I., Baranov, N., Malkin, E., Lapin, A., Kardymon, O. & Fishman, V., 20 Mar 2023, In: GigaScience. 12, p. 1-11 11 p., giad015.

    Research output: Contribution to journal › Article › peer-review

  23. Function and Evolution of the Loop Extrusion Machinery in Animals

    Kabirova, E., Nurislamov, A., Shadskiy, A., Smirnov, A., Popov, A., Salnikov, P., Battulin, N. & Fishman, V., 6 Mar 2023, In: International Journal of Molecular Sciences. 24, 5, 5017.

    Research output: Contribution to journal › Review article › peer-review

  24. A Cre-LoxP-based approach for combinatorial chromosome rearrangements in human HAP1 cells

    Khabarova, A., Koksharova, G., Salnikov, P., Belokopytova, P., Mungalov, R., Pristyazhnuk, I., Nurislamov, A., Gridina, M. & Fishman, V., 26 Feb 2023, In: Chromosome Research. 31, 1, 15 p., 11.

    Research output: Contribution to journal › Article › peer-review

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