Combining chromosome conformation capture and exome sequencing for simultaneous detection of structural and single-nucleotide variants

Gridina, M., Lagunov, T., Belokopytova, P., Torgunakov, N., Nuriddinov, M., Nurislamov, A., Nazarenko, L. P., Kashevarova, A. A., Lopatkina, M. E., Vasilyev, S., Zuev, A., Belyaeva, E. O., Salyukova, O. A., Cheremnykh, A. D., Sukhanova, N. N., Minzhenkova, M. E., Markova, Z. G., Demina, N. A., Stepanchuk, Y., Khabarova, A., & 22 othersYan, A., Valeev, E., Koksharova, G., Grigor’eva, E. V., Kokh, N., Lukjanova, T., Maximova, Y., Musatova, E., Shabanova, E., Kechin, A., Khrapov, E., Boyarskih, U., Ryzhkova, O., Suntsova, M., Matrosova, A., Karoli, M., Manakhov, A., Filipenko, M., Rogaev, E., Shilova, N. V., Lebedev, I. N. & Fishman, V., 7 May 2025, In: Genome Medicine. 17, 1, p. 47 47.

Research output: Contribution to journal › Article › peer-review

C-InterSecture-a computational tool for interspecies comparison of genome architecture

Nuriddinov, M. & Fishman, V., 1 Dec 2019, In: Bioinformatics (Oxford, England). 35, 23, p. 4912-4921 10 p.

Research output: Contribution to journal › Article › peer-review

Chromatin landscape, transcriptomic and ChIP-seq profiling of Anopheles stephensi MSQ43 cell line

Lukyanchikova, V., Nuriddinov, M., Khabarova, A., Gridina, M., Popov, A., Belokopytova, P., Sharakhov, I. V. & Fishman, V., 26 Sept 2025, In: Scientific Data. 12, 1, p. 1566

Research output: Contribution to journal › Article › peer-review

Charm is a flexible pipeline to simulate chromosomal rearrangements on Hi-C-like data

Nuriddinov, M., Belokopytova, P. & Fishman, V., Jun 2025, In: NAR Genomics and Bioinformatics. 7, 2, p. lqaf081 10 p., lqaf081.

Research output: Contribution to journal › Article › peer-review

Cell type-specific interpretation of noncoding variants using deep learning-based methods

Sindeeva, M., Chekanov, N., Avetisian, M., Shashkova, T. I., Baranov, N., Malkin, E., Lapin, A., Kardymon, O. & Fishman, V., 20 Mar 2023, In: GigaScience. 12, p. 1-11 11 p., giad015.

Research output: Contribution to journal › Article › peer-review

Anopheles mosquitoes reveal new principles of 3D genome organization in insects

Lukyanchikova, V., Nuriddinov, M., Belokopytova, P., Taskina, A., Liang, J., Reijnders, M. J. M. F., Ruzzante, L., Feron, R., Waterhouse, R. M., Wu, Y., Mao, C., Tu, Z., Sharakhov, I. V. & Fishman, V., Dec 2022, In: Nature Communications. 13, 1, 1960.

Research output: Contribution to journal › Article › peer-review

An Exceptionally Complex Chromosome Rearrangement in the Great Tit (Parus major): Genetic Composition, Meiotic Behavior and Population Frequency

Torgasheva, A., Malinovskaya, L., Nuriddinov, M., Zadesenets, K. S., Gridina, M., Nurislamov, A., Korableva, S., Pristyazhnyuk, I., Proskuryakova, A., Tishakova, K. V., Rubtsov, N. B., Fishman, V. S. & Borodin, P., 27 Dec 2025, In: Cells. 15, 1, 24 p., 52.

Research output: Contribution to journal › Article › peer-review

Analysis of differential expression of matrix metalloproteases in stable and unstable atherosclerotic lesions by a method of full genome sequencing of RNA: Pilot study

Ivanoschuk, D. E., Ragino, Y. I., Shakhtshneider, E. V., Mikhailova, S. V., Fishman, V. S., Polonskaya, Y. V., Kashtanova, E. V., Chernyavsky, A. M., Murashov, I. S. & Voevoda, M. I., 1 Jan 2018, In: Russian Journal of Cardiology. 23, 8, p. 52-58 7 p.

Research output: Contribution to journal › Article › peer-review

A mosaic intragenic microduplication of LAMA1 and a constitutional 18p11.32 microduplication in a patient with keratosis pilaris and intellectual disability

Kashevarova, A. A., Nazarenko, L. P., Skryabin, N. A., Nikitina, T. V., Vasilyev, S. A., Tolmacheva, E. N., Lopatkina, M. E., Salyukova, O. A., Chechetkina, N. N., Vorotelyak, E. A., Kalabusheva, E. P., Fishman, V. S., Kzhyshkowska, J., Graziano, C., Magini, P., Romeo, G. & Lebedev, I. N., 1 Nov 2018, In: American Journal of Medical Genetics, Part A. 176, 11, p. 2395-2403 9 p.

Research output: Contribution to journal › Article › peer-review