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  1. 2025

  2. EBSn, a Robust Synthetic Reporter for Monitoring Ethylene Responses in Plants

    Fernandez‐moreno, J., Fenech, M., Yaschenko, A. E., Zhao, C., Neubauer, M., Davis, H. N., Marchi, A. J., Concannon, R., Keren‐keiserman, A., Reuveni, M., Levitsky, V., Oshchepkov, D., Dolgikh, V., Goldshmidt, A., Ascencio‐ibáñez, J. T., Zemlyanskaya, E., Alonso, J. M. & Stepanova, A. N., 21 Sept 2025, In: Plant Biotechnology Journal.

    Research output: Contribution to journal › Article › peer-review

  3. 2024

  4. PlantReg: the reconstruction of links between transcription factor regulatory networks and biological processes under their control

    Lavrekha, V. V., Omelyanchuk, N. A., Bogomolov, A. G. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 950-959 10 p.

    Research output: Contribution to journal › Article › peer-review

  5. Reconstruction of gene regulatory networks from single cell transcriptomic data

    Rybakov, M. A., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 974-981 8 p.

    Research output: Contribution to journal › Article › peer-review

  6. Root cap border cells as regulators of rhizosphere microbiota

    Omelyanchuk, N. A., Cherenko, V. A. & Zemlyanskaya, E. V., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 918-926 9 p.

    Research output: Contribution to journal › Article › peer-review

  7. Cytokinins regulate spatially specific ethylene production to control root growth in Arabidopsis

    Yamoune, A., Zdarska, M., Depaepe, T., Rudolfova, A., Skalak, J., Berendzen, K. W., Mira-Rodado, V., Fitz, M., Pekarova, B., Nicolas Mala, K. L., Tarr, P., Spackova, E., Tomovicova, L., Parizkova, B., Franczyk, A., Kovacova, I., Dolgikh, V., Zemlyanskaya, E., Pernisova, M., Novak, O., & 4 othersMeyerowitz, E., Harter, K., Van Der Straeten, D. & Hejatko, J., 11 Nov 2024, In: Plant Communications. 5, 11, 17 p., 101013.

    Research output: Contribution to journal › Article › peer-review

  8. Primary multistep phosphorelay activation comprises both cytokinin and abiotic stress responses: insights from comparative analysis of Brassica type-A response regulators

    Nicolas Mala, K. L., Skalak, J., Zemlyanskaya, E., Dolgikh, V., Jedlickova, V., Robert, H. S., Havlickova, L., Panzarova, K., Trtilek, M., Bancroft, I. & Hejatko, J., 1 Oct 2024, In: Journal of Experimental Botany. 75, 20, p. 6346-6368 23 p.

    Research output: Contribution to journal › Article › peer-review

  9. Computational Reconstruction of the Transcription Factor Regulatory Network Induced by Auxin in Arabidopsis thaliana L.

    Omelyanchuk, N. A., Lavrekha, V. V., Bogomolov, A. G., Dolgikh, V. A., Sidorenko, A. D. & Zemlyanskaya, E. V., 10 Jul 2024, In: Plants. 13, 14, 1905.

    Research output: Contribution to journal › Article › peer-review

  10. Genetic Mechanisms Regulating Root Cap Cell Renewal in Arabidopsis thaliana L.

    Cherenko, V. A., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Apr 2024, In: Russian Journal of Plant Physiology. 71, 2, 12 p., 51.

    Research output: Contribution to journal › Article › peer-review

  11. AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.

    Bogomolov, A., Zolotareva, K., Filonov, S., Chadaeva, I., Rasskazov, D., Sharypova, E., Podkolodnyy, N., Ponomarenko, P., Savinkova, L., Tverdokhleb, N., Khandaev, B., Kondratyuk, E., Podkolodnaya, O., Zemlyanskaya, E., Kolchanov, N. A. & Ponomarenko, M., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 607.

    Research output: Contribution to journal › Article › peer-review

  12. Hormone-regulated expansins: expression, localization, and cell wall biomechanics in Arabidopsis root growth

    Samalova, M., Melnikava, A., Elsayad, K., Peaucelle, A., Gahurova, E., Gumulec, J., Spyroglou, I., Zemlyanskaya, E. V., Ubogoeva, E. V., Balkova, D., Demko, M., Blavet, N., Alexiou, P., Benes, V., Mouille, G. & Hejatko, J., Jan 2024, In: Plant Physiology. 194, 1, p. 209-228 20 p.

    Research output: Contribution to journal › Article › peer-review

  13. 2023

  14. DyCeModel: a tool for 1D simulation for distribution of plant hormones controlling tissue patterning

    Azarova, D. S., Omelyanchuk, N. A., Mironova, V. V., Zemlyanskaya, E. V. & Lavrekha, V. V., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 7, p. 890-897 8 p.

    Research output: Contribution to journal › Article › peer-review

  15. InterTransViewer: a comparative description of differential gene expression profiles from different experiments

    Tyapkin, А. V., Lavrekha, V. V., Ubogoeva, E. V., Oshchepkov, D. Y., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Dec 2023, In: Vavilovskii Zhurnal Genetiki i Selektsii. 27, 8, p. 1042-1052 11 p.

    Research output: Contribution to journal › Article › peer-review

  16. 2022

  17. Молекулярные механизмы детерминации клеток сосудистой системы корня Arabidopsis thaliana L

    Sidorenko, A. D., Omelyanchuk, N. A. & Zemlyanskaya, E. V., Dec 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 8, p. 721-732 12 p., 1.

    Research output: Contribution to journal › Article › peer-review

  18. CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

    Lavrekha, V. V., Levitsky, V. G., Tsukanov, A. V., Bogomolov, A. G., Grigorovich, D. A., Omelyanchuk, N., Ubogoeva, E. V., Zemlyanskaya, E. V. & Mironova, V., 18 Aug 2022, In: Frontiers in Plant Science. 13, 942710.

    Research output: Contribution to journal › Article › peer-review

  19. Web-MCOT Server for Motif Co-Occurrence Search in ChIP-Seq Data

    Levitsky, V. G., Mukhin, A. M., Oshchepkov, D. Y., Zemlyanskaya, E. V. & Lashin, S. A., 11 Aug 2022, In: International Journal of Molecular Sciences. 23, 16, 8981.

    Research output: Contribution to journal › Article › peer-review

  20. Salicylic Acid in Root Growth and Development

    Bagautdinova, Z. Z., Omelyanchuk, N., Tyapkin, A. V., Kovrizhnykh, V. V., Lavrekha, V. V. & Zemlyanskaya, E. V., 1 Feb 2022, In: International Journal of Molecular Sciences. 23, 4, 2228.

    Research output: Contribution to journal › Review article › peer-review

  21. 2021

  22. Mechanisms of stress response in the root stem cell niche

    Ubogoeva, E. V., Zemlyanskaya, E. V., Xu, J. & Mironova, V., 13 Oct 2021, In: Journal of Experimental Botany. 72, 19, p. 6746-6754 9 p.

    Research output: Contribution to journal › Review article › peer-review

  23. Transcriptional regulation in plants: Using omics data to crack the cis-regulatory code

    Zemlyanskaya, E. V., Dolgikh, V. A., Levitsky, V. G. & Mironova, V., Oct 2021, In: Current Opinion in Plant Biology. 63, p. 102058 102058.

    Research output: Contribution to journal › Review article › peer-review

  24. 2020

  25. Asymmetric conservation within pairs of co-occurred motifs mediates weak direct binding of transcription factors in chip-seq data

    Levitsky, V., Oshchepkov, D., Zemlyanskaya, E. & Merkulova, T., 21 Aug 2020, In: International Journal of Molecular Sciences. 21, 17, p. 1-22 22 p., 6023.

    Research output: Contribution to journal › Article › peer-review

  26. Fold-change-specific enrichment analysis (FSEA): Quantification of transcriptional response magnitude for functional gene groups

    Wiebe, D. S., Omelyanchuk, N. A., Mukhin, A. M., Grosse, I., Lashin, S. A., Zemlyanskaya, E. V. & Mironova, V. V., 17 Apr 2020, In: Genes. 11, 4, 14 p., 434.

    Research output: Contribution to journal › Article › peer-review

  27. 2019

  28. A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package

    Levitsky, V., Zemlyanskaya, E., Oshchepkov, D., Podkolodnaya, O., Ignatieva, E., Grosse, I., Mironova, V. & Merkulova, T., 2 Dec 2019, In: Nucleic Acids Research. 47, 21, p. e139 14 p.

    Research output: Contribution to journal › Article › peer-review

  29. Shaping Ethylene Response: The Role of EIN3/EIL1 Transcription Factors

    Dolgikh, V. A., Pukhovaya, E. M. & Zemlyanskaya, E. V., 26 Aug 2019, In: Frontiers in Plant Science. 10, p. 1030 9 p., 1030.

    Research output: Contribution to journal › Review article › peer-review

  30. 2018

  31. Deciphering auxin-ethylene crosstalk at a systems level

    Zemlyanskaya, E. V., Omelyanchuk, N. A., Ubogoeva, E. V. & Mironova, V. V., 14 Dec 2018, In: International Journal of Molecular Sciences. 19, 12, 15 p., 4060.

    Research output: Contribution to journal › Review article › peer-review

  32. 2017

  33. Systems biology analysis of the WOX5 gene and its functions in the root stem cell niche

    Oshchepkova, E. A., Omelyanchuk, N. A., Savina, M. S., Pasternak, T., Kolchanov, N. A. & Zemlyanskaya, E. V., 1 Jun 2017, In: Russian Journal of Genetics: Applied Research. 7, 4, p. 404-420 17 p.

    Research output: Contribution to journal › Article › peer-review

  34. Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots

    Omelyanchuk, N. A., Wiebe, D. S., Novikova, D. D., Levitsky, V. G., Klimova, N., Gorelova, V., Weinholdt, C., Vasiliev, G. V., Zemlyanskaya, E. V., Kolchanov, N. A., Kochetov, A. V., Grosse, I. & Mironova, V. V., 30 May 2017, In: Scientific Reports. 7, 1, p. 2489 11 p., 2489.

    Research output: Contribution to journal › Article › peer-review

  35. Mechanisms regulating ethylene signal transduction in plants

    Zemlyanskaya, E. V., Omelyanchuk, N. A., Ermakov, A. A. & Mironova, V. V., 1 May 2017, In: Russian Journal of Genetics: Applied Research. 7, 3, p. 335-344 10 p.

    Research output: Contribution to journal › Article › peer-review

  36. The interplay of chromatin landscape and DNA-binding context suggests distinct modes of EIN3 regulation in Arabidopsis thaliana

    Zemlyanskaya, E. V., Levitsky, V. G., Oshchepkov, D. Y., Grosse, I. & Mironova, V. V., 9 Jan 2017, In: Frontiers in Plant Science. 7, 9 p., 2044.

    Research output: Contribution to journal › Article › peer-review

ID: 3448987