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  1. 2025

  2. Quantitative Modeling of IgG N-Glycosylation Profiles from Population Data

    Kutumova, E., Mandrik, N., Sharipov, R., Pučić-Baković, M., Rapčan, B., Aulchenko, Y., Lauc, G. & Kolpakov, F., 27 Nov 2025, In: International Journal of Molecular Sciences. 26, 23, 11495.

    Research output: Contribution to journal › Article › peer-review

  3. 2024

  4. Mathematical modelling of the influence of ACE I/D polymorphism on blood pressure and antihypertensive therapy

    Kutumova, E., Kovaleva, A., Sharipov, R., Lifshits, G. & Kolpakov, F., 15 May 2024, In: Heliyon. 10, 9, p. e29988 e29988.

    Research output: Contribution to journal › Article › peer-review

  5. 2022

  6. Mathematical modeling of antihypertensive therapy

    Kutumova, E., Kiselev, I., Sharipov, R., Lifshits, G. & Kolpakov, F., Dec 2022, In: Frontiers in Physiology. 13, p. 1070115

    Research output: Contribution to journal › Article › peer-review

  7. Physiologically Based Pharmacokinetic Modeling of Nanoparticle Biodistribution: A Review of Existing Models, Simulation Software, and Data Analysis Tools

    Кутумова, Е. О., Акбердин, И. Р., Киселев, И. Н., Шарипов, Р. Н., Егорова, В. С., Сырочева, А. О., Parodi, A., Замятнин, А. А. & Колпаков, Ф. А., 19 Oct 2022, In: International Journal of Molecular Sciences. 23, 20, 22 p., 12560.

    Research output: Contribution to journal › Review article › peer-review

  8. BioUML—towards a universal research platform

    Колпаков, Ф., Акбердин, И. Р., Киселев, И., Колмыков, С. К., Кондрахин, Ю., Куляшов, М. А., Кутумова, Е., Пинтус, С. С., Рябова, А., Шарипов, Р. Н., Евшин, И., Жатченко, С. & Кель, А., 5 Jul 2022, In: Nucleic Acids Research. 50, W1, p. W124-W131 8 p.

    Research output: Contribution to journal › Article › peer-review

  9. Modular Representation of Physiologically Based Pharmacokinetic Models: Nanoparticle Delivery to Solid Tumors in Mice as an Example

    Kutumova, E., Akberdin, I., Kiselev, I., Sharipov, R. & Kolpakov, F., 1 Apr 2022, In: Mathematics. 10, 7, 20 p., 1176.

    Research output: Contribution to journal › Article › peer-review

  10. ON THE RELATIONSHIP OF NEURODERGENERATIVE DISEASES WITH AIR POLLUTION BY PARTICULATE MATTER

    Kolpakova, A. F., Sharipov, R. N. & Volkova, O. A., 2022, In: Russian Neurological Journal. 27, 4, p. 5-15 11 p.

    Research output: Contribution to journal › Article › peer-review

  11. 2021

  12. Thoroughly Calibrated Modular Agent-Based Model of the Human Cardiovascular and Renal Systems for Blood Pressure Regulation in Health and Disease

    Kutumova, E., Kiselev, I., Sharipov, R., Lifshits, G. & Kolpakov, F., 11 Nov 2021, In: Frontiers in Physiology. 12, 746300.

    Research output: Contribution to journal › Article › peer-review

  13. A modular mathematical model of exercise-induced changes in metabolism, signaling, and gene expression in human skeletal muscle

    Akberdin, I. R., Kiselev, I. N., Pintus, S. S., Sharipov, R. N., Vertyshev, A. Y., Vinogradova, O. L., Popov, D. V. & Kolpakov, F. A., 1 Oct 2021, In: International Journal of Molecular Sciences. 22, 19, 10353.

    Research output: Contribution to journal › Article › peer-review

  14. GTRD: An integrated view of transcription regulation

    Kolmykov, S., Yevshin, I., Kulyashov, M., Sharipov, R., Kondrakhin, Y., Makeev, V. J., Kulakovskiy, I. V., Kel, A. & Kolpakov, F., Jan 2021, In: Nucleic Acids Research. 49, D1, p. D104-D111 8 p.

    Research output: Contribution to journal › Review article › peer-review

  15. Роль загрязнения воздуха взвешенными частицами в патогенезе онкологических заболеваний

    Kolpakova, A. F., Sharipov, R. N., Volkova, O. A. & Kolpakov, F. A., 2021, In: Siberian Journal of Oncology. 20, 2, p. 102-109 8 p., 13.

    Research output: Contribution to journal › Article › peer-review

  16. 2020

  17. Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 data

    Sharipov, R. N., Kondrakhin, Y. V., Ryabova, A. S., Yevshin, I. S. & Kolpakov, F. A., 21 Dec 2020, In: PLoS ONE. 15, 12, 15 p., e0243332.

    Research output: Contribution to journal › Article › peer-review

  18. Meta-analysis of ChIP-seq Datasets through the Rank Aggregation Approach

    Kolmykov, S. K., Kondrakhin, Y. V., Sharipov, R. N., Yevshi, I. S., Ryabova, A. S. & Kolpakov, F. A., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 180-184 5 p. 9214614. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  19. Role of air pollution by particulate matter in the pathogenesis of cardiovascular diseases. Prevention measures

    Kolpakova, A. F., Sharipov, R. N., Volkova, O. A. & Kolpakov, F. A., 1 Mar 2020, In: Cardiovascular Therapy and Prevention (Russian Federation). 19, 3, p. 71-77 7 p.

    Research output: Contribution to journal › Review article › peer-review

  20. 2019

  21. Population size estimation for quality control of ChIP-Seq datasets

    Kolmykov, S. K., Kondrakhin, Y. V., Yevshin, I. S., Sharipov, R. N., Ryabova, A. S. & Kolpakov, F. A., 1 Aug 2019, In: PLoS ONE. 14, 8, p. e0221760 17 p., e0221760.

    Research output: Contribution to journal › Article › peer-review

  22. BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data

    Kolpakov, F., Akberdin, I., Kashapov, T., Kiselev, L., Kolmykov, S., Kondrakhin, Y., Kutumova, E., Mandrik, N., Pintus, S., Ryabova, A., Sharipov, R., Yevshin, I. & Kel, A., 1 Jul 2019, In: Nucleic Acids Research. 47, W1, p. W225-W233 9 p.

    Research output: Contribution to journal › Article › peer-review

  23. GTRD: a database on gene transcription regulation-2019 update

    Yevshin, I., Sharipov, R., Kolmykov, S., Kondrakhin, Y. & Kolpakov, F., 8 Jan 2019, In: Nucleic Acids Research. 47, D1, p. D100-D105 6 p.

    Research output: Contribution to journal › Article › peer-review

  24. Particle pollution as a risk factor for lung carcinoma

    Kolpakova, A. F., Sharipov, R. N., Volkova, O. A. & Kolpakov, F. A., 1 Jan 2019, In: Pulmonologiya. 29, 4, p. 477-485 9 p.

    Research output: Contribution to journal › Article › peer-review

  25. 2018

  26. Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data 06 Biological Sciences 0604 Genetics

    Vorontsov, I. E., Fedorova, A. D., Yevshin, I. S., Sharipov, R. N., Kolpakov, F. A., Makeev, V. J. & Kulakovskiy, I. V., 23 Oct 2018, In: BMC Research Notes. 11, 1, p. 756 756.

    Research output: Contribution to journal › Article › peer-review

  27. Comparative analysis of protein-coding and long non-coding transcripts based on RNA sequence features

    Volkova, O. A., Kondrakhin, Y. V., Kashapov, T. A. & Sharipov, R. N., 1 Apr 2018, In: Journal of Bioinformatics and Computational Biology. 16, 2, 14 p., 1840013.

    Research output: Contribution to journal › Article › peer-review

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