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  1. 2025

  2. Asymmetry of Motif Conservation Within Their Homotypic Pairs Distinguishes DNA-Binding Domains of Target Transcription Factors in ChIP-Seq Data

    Levitsky, V. G., Raditsa, V. V., Tsukanov, A. V., Mukhin, A. M., Zhimulev, I. F. & Merkulova, T. I., 4 Jan 2025, In: International Journal of Molecular Sciences. 26, 1, 386.

    Research output: Contribution to journal › Article › peer-review

  3. 2024

  4. MetArea: a software package for analysis of the mutually exclusive occurrence in pairs of motifs of transcription factor binding sites based on ChIP-seq data

    Levitsky, V. G., Tsukanov, A. V. & Merkulova, T. I., Dec 2024, In: Vavilovskii Zhurnal Genetiki i Selektsii. 28, 8, p. 822-833 12 p.

    Research output: Contribution to journal › Article › peer-review

  5. 2022

  6. The functional insight into the geneticsof cardiovascular disease: results from the post-GWAS study

    Bryzgalov, L. O., Korbolina, E. E., Damarov, I. S. & Merkulova, T., Feb 2022, In: Vavilovskii Zhurnal Genetiki i Selektsii. 26, 1, p. 65-73 9 p., 8.

    Research output: Contribution to journal › Article › peer-review

  7. 2021

  8. A panel of rsnps demonstrating allelic asymmetry in both chip-seq and rna-seq data and the search for their phenotypic outcomes through analysis of degs

    Korbolina, E. E., Bryzgalov, L. O., Ustrokhanova, D. Z., Postovalov, S. N., Poverin, D. V., Damarov, I. S. & Merkulova, T. I., 2 Jul 2021, In: International Journal of Molecular Sciences. 22, 14, 7240.

    Research output: Contribution to journal › Article › peer-review

  9. Regulatory SPNs: Altered transcription factor binding sites implicated in complex traits and diseases

    Degtyareva, A. O., Antontseva, E. V. & Merkulova, T. I., 2 Jun 2021, In: International Journal of Molecular Sciences. 22, 12, 6454.

    Research output: Contribution to journal › Article › peer-review

  10. Social defeat stress in adult mice causes alterations in gene expression, alternative splicing, and the epigenetic landscape of H3K4me3 in the prefrontal cortex: An impact of early-life stress

    Reshetnikov, V. V., Kisaretova, P. E., Ershov, N. I., Merkulova, T. I. & Bondar, N. P., 2 Mar 2021, In: Progress in Neuro-Psychopharmacology and Biological Psychiatry. 106, 16 p., 110068.

    Research output: Contribution to journal › Article › peer-review

  11. Метод поиска структурной гетерогенности сайтов связывания транскрипционных факторов с использованием альтернативных de novo моделей на примере FOXA2

    Tsukanov, A. V., Levitsky, V. G. & Merkulova, T. I., Feb 2021, In: Vavilovskii Zhurnal Genetiki i Selektsii. 25, 1, p. 7-17 11 p., 1.

    Research output: Contribution to journal › Article › peer-review

  12. 2020

  13. Data of correlation analysis between the density of H3K4me3 in promoters of genes and gene expression: Data from RNA-seq and ChIP-seq analyses of the murine prefrontal cortex

    Reshetnikov, V. V., Kisaretova, P. E., Ershov, N. I., Merkulova, T. I. & Bondar, N. P., Dec 2020, In: Data in Brief. 33, 7 p., 106365.

    Research output: Contribution to journal › Article › peer-review

  14. Genes associated with cognitive performance in the Morris water maze: an RNA-seq study

    Reshetnikov, V. V., Kisaretova, P. E., Ershov, N. I., Shulyupova, A. S., Oshchepkov, D. Y., Klimova, N. V., Ivanchihina, A. V., Merkulova, T. I. & Bondar, N. P., Dec 2020, In: Scientific Reports. 10, 1, 16 p., 22078.

    Research output: Contribution to journal › Article › peer-review

  15. Asymmetric conservation within pairs of co-occurred motifs mediates weak direct binding of transcription factors in chip-seq data

    Levitsky, V., Oshchepkov, D., Zemlyanskaya, E. & Merkulova, T., 21 Aug 2020, In: International Journal of Molecular Sciences. 21, 17, p. 1-22 22 p., 6023.

    Research output: Contribution to journal › Article › peer-review

  16. The Effects of Chronic Stress on Brain Myelination in Humans and in Various Rodent Models

    Antontseva, E., Bondar, N., Reshetnikov, V. & Merkulova, T., 10 Aug 2020, In: Neuroscience. 441, p. 226-238 13 p.

    Research output: Contribution to journal › Review article › peer-review

  17. Functional study of potential regulatory SNPs (rs590352, rs11542583, rs3829202, rs78317230, rs2072580, rs4796672)

    Degtyareva, A., Leberfarb, E., Brusentsov, I., Kuzina, T. & Merkulova, T., Jul 2020, Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020. Institute of Electrical and Electronics Engineers Inc., p. 122-125 4 p. 9214780. (Proceedings - 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  18. rs2072580T>A Polymorphism in the Overlapping Promoter Regions of the SART3 and ISCU Genes Associated with the Risk of Breast Cancer

    Degtyareva, A. O., Leberfarb, E. Y., Efimova, E. G., Brusentsov, I. I., Usova, A. V., Lushnikova, E. L. & Merkulova, T. I., 1 May 2020, In: Bulletin of Experimental Biology and Medicine. 169, 1, p. 81-84 4 p.

    Research output: Contribution to journal › Article › peer-review

  19. Potential regulatory SNPs in the ATXN7L3B and KRT15 genes are associated with gender-specific colorectal cancer risk

    Leberfarb, E. Y., Degtyareva, A. O., Brusentsov, I. I., Maximov, V. N., Voevoda, M. I., Autenshlus, A. I., Morozov, D. V., Sokolov, A. V. & Merkulova, T. I., Jan 2020, In: Personalized Medicine. 17, 1, p. 43-54 12 p.

    Research output: Contribution to journal › Article › peer-review

  20. 2019

  21. A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package

    Levitsky, V., Zemlyanskaya, E., Oshchepkov, D., Podkolodnaya, O., Ignatieva, E., Grosse, I., Mironova, V. & Merkulova, T., 2 Dec 2019, In: Nucleic Acids Research. 47, 21, p. e139 14 p.

    Research output: Contribution to journal › Article › peer-review

  22. Effect of neonatal dexamethasone treatment on cognitive abilities of adult male mice and gene expression in the hypothalamus

    Bondar, N. P., Reshetnikov, V. V., Burdeeva, K. V. & Merkulova, T. I., 1 Jan 2019, In: Вавиловский журнал генетики и селекции. 23, 4, p. 456-464 9 p.

    Research output: Contribution to journal › Article › peer-review

  23. 2018

  24. Regulatory SNPs and their widespread effects on the transcriptome

    Merkulov, V. M., Leberfarb, E. Y. & Merkulova, T. I., 1 Dec 2018, In: Journal of Biosciences. 43, 5, p. 1069-1075 7 p.

    Research output: Contribution to journal › Review article › peer-review

  25. Novel approach to functional SNPs discovery from genome-wide data reveals promising variants for colon cancer risk

    Korbolina, E. E., Brusentsov, I. I., Bryzgalov, L. O., Leberfarb, E. Y., Degtyareva, A. O. & Merkulova, T. I., 1 Jun 2018, In: Human Mutation. 39, 6, p. 851-859 9 p.

    Research output: Contribution to journal › Article › peer-review

  26. Novel functional variants at the GWAS-implicated loci might confer risk to major depressive disorder, bipolar affective disorder and schizophrenia

    Bryzgalov, L. O., Korbolina, E. E., Brusentsov, I. I., Leberfarb, E. Y., Bondar, N. P. & Merkulova, T. I., 19 Apr 2018, In: BMC Neuroscience. 19, Suppl 1, p. 22 16 p., 22.

    Research output: Contribution to journal › Article › peer-review

  27. Molecular Adaptations to Social Defeat Stress and Induced Depression in Mice

    Bondar, N., Bryzgalov, L., Ershov, N., Gusev, F., Reshetnikov, V., Avgustinovich, D., Tenditnik, M., Rogaev, E. & Merkulova, T., 1 Apr 2018, In: Molecular Neurobiology. 55, 4, p. 3394-3407 14 p.

    Research output: Contribution to journal › Article › peer-review

  28. Consequences of early life stress on genomic landscape of H3K4me3 in prefrontal cortex of adult mice

    Ershov, N. I., Bondar, N. P., Lepeshko, A. A., Reshetnikov, V. V., Ryabushkina, J. A. & Merkulova, T. I., 9 Feb 2018, In: BMC Genomics. 19, Suppl 3, p. 93 11 p., 93.

    Research output: Contribution to journal › Article › peer-review

  29. The impact of early-life stress on the expression of HPA-associated genes in the adult murine brain

    Reshetnikov, V. V., Studenikina, A. A., Ryabushkina, J. A., Merkulova, T. I. & Bondar, N. P., 1 Jan 2018, In: Behaviour. 155, 2-3, p. 181-203 23 p.

    Research output: Contribution to journal › Article › peer-review

ID: 3437678