1. 2024
  2. Characterization and PCR Application of Family B DNA Polymerases from Thermococcus stetteri

    Kuznetsova, A. A., Soloveva, M. A., Mikushina, E. S., Gavrilova, A. A., Bakman, A. S. & Kuznetsov, N. A., 25 Nov 2024, In: Life. 14, 12, 1544.

    Research output: Contribution to journalArticlepeer-review

  3. Kinetic Features of Degradation of R-Loops by RNase H1 from Escherichia coli

    Kuznetsova, A. A., Kosarev, I. A., Timofeyeva, N. A., Novopashina, D. S. & Kuznetsov, N. A., 15 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12263.

    Research output: Contribution to journalArticlepeer-review

  4. The Trajectory of Damaged-Base Eversion into the Active Site of Apurinic/Apyrimidinic Endonuclease APE1 Regulates This Enzyme’s Substrate Specificity

    Bulygin, A. A. & Kuznetsov, N. A., 15 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12287.

    Research output: Contribution to journalArticlepeer-review

  5. Role of R-Loop Structure in Efficacy of RNA Elongation Synthesis by RNA Polymerase from Escherichia coli

    Timofeyeva, N. A., Tsoi, E. I., Novopashina, D. S., Kuznetsova, A. A. & Kuznetsov, N. A., 14 Nov 2024, In: International Journal of Molecular Sciences. 25, 22, 12190.

    Research output: Contribution to journalArticlepeer-review

  6. Bioremediation of Polycyclic Aromatic Hydrocarbons by Means of Bacteria and Bacterial Enzymes

    Davletgildeeva, A. T. & Kuznetsov, N. A., Sept 2024, In: Microorganisms. 12, 9, 1814.

    Research output: Contribution to journalArticlepeer-review

  7. Dealkylation of Macromolecules by Eukaryotic α-Ketoglutarate-Dependent Dioxygenases from the AlkB-like Family

    Davletgildeeva, A. T. & Kuznetsov, N. A., Sept 2024, In: Current issues in molecular biology. 46, 9, p. 10462-10491 30 p.

    Research output: Contribution to journalReview articlepeer-review

  8. The Role of DNMT Methyltransferases and TET Dioxygenases in the Maintenance of the DNA Methylation Level

    Davletgildeeva, A. T. & Kuznetsov, N. A., Sept 2024, In: Biomolecules. 14, 9, 1117.

    Research output: Contribution to journalArticlepeer-review

  9. An Insight into the Mechanism of DNA Cleavage by DNA Endonuclease from the Hyperthermophilic Archaeon Pyrococcus furiosus

    Davletgildeeva, A. T., Kuznetsova, A. A., Ishchenko, A. A., Saparbaev, M. & Kuznetsov, N. A., Aug 2024, In: International Journal of Molecular Sciences. 25, 16, 8897.

    Research output: Contribution to journalArticlepeer-review

  10. Computational Modeling Study of the Molecular Basis of dNTP Selectivity in Human Terminal Deoxynucleotidyltransferase

    Ukladov, E. O., Tyugashev, T. E. & Kuznetsov, N. A., Aug 2024, In: Biomolecules. 14, 8, 961.

    Research output: Contribution to journalArticlepeer-review

  11. SNP-Associated Substitutions of Amino Acid Residues in the dNTP Selection Subdomain Decrease Polβ Polymerase Activity

    Kladova, O. A., Tyugashev, T. E., Miroshnikov, A. A., Novopashina, D. S., Kuznetsov, N. A. & Kuznetsova, A. A., 2 May 2024, In: Biomolecules. 14, 5, 19 p., 547.

    Research output: Contribution to journalArticlepeer-review

  12. The Impact of SNP-Induced Amino Acid Substitutions L19P and G66R in the dRP-Lyase Domain of Human DNA Polymerase β on Enzyme Activities

    Kladova, O. A., Tyugashev, T. E., Yakimov, D. V., Mikushina, E. S., Novopashina, D. S., Kuznetsov, N. A. & Kuznetsova, A. A., 10 Apr 2024, In: International Journal of Molecular Sciences. 25, 8, 4182.

    Research output: Contribution to journalArticlepeer-review

  13. Coordination between human DNA polymerase β and apurinic/apyrimidinic endonuclease 1 in the course of DNA repair

    Bakman, A. S., Boichenko, S. S., Kuznetsova, A. A., Ishchenko, A. A., Saparbaev, M. & Kuznetsov, N. A., Jan 2024, In: Biochimie. 216, p. 126-136 11 p.

    Research output: Contribution to journalArticlepeer-review

  14. Substrate Specificity Diversity of Human Terminal Deoxynucleotidyltransferase May Be a Naturally Programmed Feature Facilitating Its Biological Function

    Kuznetsova, A. A., Senchurova, S. I., Gavrilova, A. A., Tyugashev, T. E., Mikushina, E. S. & Kuznetsov, N. A., Jan 2024, In: International Journal of Molecular Sciences. 25, 2, 879.

    Research output: Contribution to journalArticlepeer-review

  15. 2023
  16. Historical Aspects of Restriction Endonucleases as Intelligent Scissors for Genetic Engineering

    Alekseeva, I. V. & Kuznetsov, N. A., Oct 2023, In: Fermentation. 9, 10, 874.

    Research output: Contribution to journalArticlepeer-review

  17. Direct Enzyme Engineering of B Family DNA Polymerases for Biotechnological Approaches

    Kuznetsova, A. A. & Kuznetsov, N. A., 30 Sept 2023, In: Bioengineering (Basel, Switzerland). 10, 10, 1150.

    Research output: Contribution to journalReview articlepeer-review

  18. Inner Amino Acid Contacts Are Key Factors of Multistage Structural Rearrangements of DNA and Affect Substrate Specificity of Apurinic/Apyrimidinic Endonuclease APE1

    Bulygin, A. A., Syryamina, V. N., Kuznetsova, A. A., Novopashina, D. S., Dzuba, S. A. & Kuznetsov, N. A., 14 Jul 2023, In: International Journal of Molecular Sciences. 24, 14, 11474.

    Research output: Contribution to journalArticlepeer-review

  19. Individual Contributions of Amido Acid Residues Tyr122, Ile168, and Asp173 to the Activity and Substrate Specificity of Human DNA Dioxygenase ABH2

    Davletgildeeva, A. T., Tyugashev, T. E., Zhao, M., Kuznetsov, N. A., Ishchenko, A. A., Saparbaev, M. & Kuznetsova, A. A., 13 Jul 2023, In: Cells. 12, 14, 1839.

    Research output: Contribution to journalArticlepeer-review

  20. Cloning, Expression, and Characterization of Family A DNA Polymerase from Massilia aurea

    Kuznetsova, A. A., Bedritskikh, K. S., Bulygin, A. A. & Kuznetsov, N. A., Jul 2023, In: Fermentation. 9, 7, 650.

    Research output: Contribution to journalArticlepeer-review

  21. The Impact of Human DNA Glycosylases on the Activity of DNA Polymerase β toward Various Base Excision Repair Intermediates

    Bakman, A. S., Boichenko, S. S., Kuznetsova, A. A., Ishchenko, A. A., Saparbaev, M. & Kuznetsov, N. A., 31 May 2023, In: International Journal of Molecular Sciences. 24, 11, 9594.

    Research output: Contribution to journalArticlepeer-review

  22. The Activity of Natural Polymorphic Variants of Human DNA Polymerase β Having an Amino Acid Substitution in the Transferase Domain

    Kladova, O. A., Tyugashev, T. E., Mikushina, E. S., Kuznetsov, N. A., Novopashina, D. S. & Kuznetsova, A. A., 2 May 2023, In: Cells. 12, 9, 1300.

    Research output: Contribution to journalArticlepeer-review

  23. Comparative Analysis of Family A DNA-Polymerases as a Searching Tool for Enzymes with New Properties

    Bulygin, A. A., Kuznetsova, A. A., Fedorova, O. S. & Kuznetsov, N. A., Apr 2023, In: Molecular Biology. 57, 2, p. 182-192 11 p.

    Research output: Contribution to journalArticlepeer-review

  24. DNA Probes for Analysis of the Activity of Key Enzymes of the Base Excision DNA Repair Pathway in Human Cells

    Alekseeva, I. V., Kuznetsova, A. A., Kladova, O. A., Shender, V. O., Schneider, P. V., Fedorova, O. S. & Kuznetsov, N. A., Apr 2023, In: Molecular Biology. 57, 2, p. 299-311 13 p.

    Research output: Contribution to journalArticlepeer-review

  25. Human Polβ Natural Polymorphic Variants G118V and R149I Affects Substate Binding and Catalysis

    Kladova, O. A., Tyugashev, T. E., Mikushina, E. S., Soloviev, N. O., Kuznetsov, N. A., Novopashina, D. S. & Kuznetsova, A. A., 20 Mar 2023, In: International Journal of Molecular Sciences. 24, 6, 5892.

    Research output: Contribution to journalArticlepeer-review

  26. Разработка и апробация ДНК-зондов для определения активности ключевых ферментов пути эксцизионной репарации оснований ДНК в клетках человека

    Alekseeva, I. V., Kuznetsova, A. A., Kladova, O. A., Шендер, В. О., Шнайдер, П. В., Fedorova, O. S. & Kuznetsov, N. A., 1 Mar 2023, In: Molekuliarnaia biologiia. 57, 2, p. 316-329 14 p., 15.

    Research output: Contribution to journalArticlepeer-review

  27. Fluorescently labeled human apurinic/apyrimidinic endonuclease APE1 reveals effects of DNA polymerase β on the APE1-DNA interaction

    Bakman, A. S., Kuznetsova, A. A., Yanshole, L. V., Ishchenko, A. A., Saparbaev, M., Fedorova, O. S. & Kuznetsov, N. A., Mar 2023, In: DNA Repair. 123, 12 p., 103450.

    Research output: Contribution to journalArticlepeer-review

  28. Сравнительный анализ ДНК-полимераз семейства А как инструмент поиска ферментов с новыми свойствами

    Булыгин, А. А., Кузнецова, А. А., Федорова, О. С. & Кузнецов, Н. А., 2023, In: Molekulyarnaya Biologiya. 57, 2, p. 185-196 12 p., 5.

    Research output: Contribution to journalArticlepeer-review

  29. 2022
  30. Insight into the mechanism of DNA synthesis by human terminal deoxynucleotidyltransferase

    Kuznetsova, A. A., Tyugashev, T. E., Alekseeva, I. V., Timofeyeva, N. A., Fedorova, O. S. & Kuznetsov, N. A., 1 Dec 2022, In: Life science alliance. 5, 12, 16 p., e202201428.

    Research output: Contribution to journalArticlepeer-review

  31. Pre-steady-state kinetic and mutational insights into mechanisms of endo- and exonuclease DNA processing by mutant forms of human AP endonuclease

    Bakman, A. S., Ishchenko, A. A., Saparbaev, M., Fedorova, O. S. & Kuznetsov, N. A., Dec 2022, In: Biochimica et Biophysica Acta - General Subjects. 1866, 12, 130198.

    Research output: Contribution to journalArticlepeer-review

  32. Kinetic Features of 3′–5′–Exonuclease Activity of Apurinic/Apyrimidinic Endonuclease Apn2 from Saccharomyces cerevisiae

    Kuznetsova, A. A., Gavrilova, A. A., Ishchenko, A. A., Saparbaev, M., Fedorova, O. S. & Kuznetsov, N. A., Nov 2022, In: International Journal of Molecular Sciences. 23, 22, 14404.

    Research output: Contribution to journalArticlepeer-review

  33. The mechanism of damage recognition by apurinic/apyrimidinic endonuclease Nfo from Escherichia coli

    Senchurova, S. I., Syryamina, V. N., Kuznetsova, A. A., Novopashina, D. S., Ishchenko, A. A., Saparbaev, M., Dzuba, S. A., Fedorova, O. S. & Kuznetsov, N. A., Nov 2022, In: Biochimica et Biophysica Acta - General Subjects. 1866, 11, 130216.

    Research output: Contribution to journalArticlepeer-review

  34. The Kinetic Mechanism of 3′-5′ Exonucleolytic Activity of AP Endonuclease Nfo from E. coli

    Senchurova, S. I., Kuznetsova, A. A., Ishchenko, A. A., Saparbaev, M., Fedorova, O. S. & Kuznetsov, N. A., Oct 2022, In: Cells. 11, 19, 2998.

    Research output: Contribution to journalArticlepeer-review

  35. Conformational Dynamics of Human ALKBH2 Dioxygenase in the Course of DNA Repair as Revealed by Stopped-Flow Fluorescence Spectroscopy

    Kanazhevskaya, L. Y., Smyshliaev, D. A., Timofeyeva, N. A., Ishchenko, A. A., Saparbaev, M., Kuznetsov, N. A. & Fedorova, O. S., Aug 2022, In: Molecules. 27, 15, 4960.

    Research output: Contribution to journalArticlepeer-review

  36. Structural and Molecular Kinetic Features of Activities of DNA Polymerases

    Kuznetsova, A. A., Fedorova, O. S. & Kuznetsov, N. A., 1 Jun 2022, In: International Journal of Molecular Sciences. 23, 12, 6373.

    Research output: Contribution to journalReview articlepeer-review

  37. Insights into Mechanisms of Damage Recognition and Catalysis by APE1-like Enzymes

    Bulygin, A. A., Fedorova, O. S. & Kuznetsov, N., 1 Apr 2022, In: International Journal of Molecular Sciences. 23, 8, 4361.

    Research output: Contribution to journalArticlepeer-review

  38. Comparative Analysis of Exo-and Endonuclease Activities of APE1-like Enzymes

    Davletgildeeva, A. T., Kuznetsova, A. A., Novopashina, D. S., Ishchenko, A. A., Saparbaev, M., Fedorova, O. S. & Kuznetsov, N. A., 1 Mar 2022, In: International Journal of Molecular Sciences. 23, 5, 2869.

    Research output: Contribution to journalArticlepeer-review

  39. The Role of Natural Polymorphic Variants of DNA Polymerase β in DNA Repair

    Kladova, O. A., Fedorova, O. S. & Kuznetsov, N. A., 1 Feb 2022, In: International Journal of Molecular Sciences. 23, 4, 2390.

    Research output: Contribution to journalReview articlepeer-review

  40. 2021
  41. Pre-Steady-State Kinetics of the SARS-CoV-2 Main Protease as a Powerful Tool for Antiviral Drug Discovery

    Zakharova, M. Y., Kuznetsova, A. A., Uvarova, V. I., Fomina, A. D., Kozlovskaya, L. I., Kaliberda, E. N., Kurbatskaia, I. N., Smirnov, I. V., Bulygin, A. A., Knorre, V. D., Fedorova, O. S., Varnek, A., Osolodkin, D. I., Ishmukhametov, A. A., Egorov, A. M., Gabibov, A. G. & Kuznetsov, N. A., 6 Dec 2021, In: Frontiers in Pharmacology. 12, 773198.

    Research output: Contribution to journalArticlepeer-review

  42. Common kinetic mechanism of abasic site recognition by structurally different apurinic/apyrimidinic endonucleases

    Kuznetsova, A. A., Senchurova, S. I., Ishchenko, A. A., Saparbaev, M., Fedorova, O. S. & Kuznetsov, N. A., 2 Aug 2021, In: International Journal of Molecular Sciences. 22, 16, 8874.

    Research output: Contribution to journalArticlepeer-review

  43. Mechanism of target nucleotide recognition and cleavage in the model non-canonical DNA and RNA structures by human AP-endonuclease APE1

    Davletgildeeva, A., Kuznetsova, A., Fedorova, O. & Kuznetsov, N., Jul 2021, In: FEBS Open Bio. 11, p. 246-246 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  44. Roles of active-site amino acid residues in RNA cleavage by human AP endonuclease APE1

    Kuznetsova, A., Gavrilova, A., Fedorova, O. & Kuznetsov, N., Jul 2021, In: FEBS Open Bio. 11, p. 246-246 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  45. The Enigma of Substrate Recognition and Catalytic Efficiency of APE1-Like Enzymes

    Davletgildeeva, A. T., Ishchenko, A. A., Saparbaev, M., Fedorova, O. S. & Kuznetsov, N. A., 26 Mar 2021, In: Frontiers in Cell and Developmental Biology. 9, p. 617161 617161.

    Research output: Contribution to journalArticlepeer-review

  46. Мутационный и кинетический анализ эндорибонуклеазной активности АРЕ1

    Kuznetsova, A. A., Gavrilova, A. A., Novopashina, D. S., Fedorova, O. S. & Kuznetsov, N. A., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 243-257 15 p., 6.

    Research output: Contribution to journalArticlepeer-review

  47. Сравнительный анализ активности полиморфных вариантов урацил-ДНК-гликолиаз человека человека SMUG1 и MBD4

    Alekseeva, I. V., Bakman, A. S., Iakovlev, D. A., Kuznetsov, N. A. & Fedorova, O. S., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 277-288 12 p., 9.

    Research output: Contribution to journalArticlepeer-review

  48. Comparative Analysis of the Activity of the Polymorphic Variants of Human Uracil-DNA-Glycosylases SMUG1 and MBD4

    Alekseeva, I., Bakman, A. S., Iakovlev, D. A., Kuznetsov, N. A. & Fedorova, O. S., Mar 2021, In: Molecular Biology. 55, 2, p. 241-251 11 p.

    Research output: Contribution to journalArticlepeer-review

  49. Mutational and Kinetic Analysis of APE1 Endoribonuclease Activity

    Kuznetsova, A. A., Gavrilova, A. A., Novopashina, D. S., Fedorova, O. S. & Kuznetsov, N. A., Mar 2021, In: Molecular Biology. 55, 2, p. 211-224 14 p., 5.

    Research output: Contribution to journalArticlepeer-review

  50. 2020
  51. Human Tyrosyl-DNA Phosphodiesterase 1 Possesses Transphosphooligonucleotidation Activity With Primary Alcohols

    Dyrkheeva, N., Anarbaev, R., Lebedeva, N., Kuprushkin, M., Kuznetsova, A., Kuznetsov, N., Rechkunova, N. & Lavrik, O., 23 Dec 2020, In: Frontiers in Cell and Developmental Biology. 8, 12 p., 604732.

    Research output: Contribution to journalArticlepeer-review

  52. The role of active-site amino acid residues in the cleavage of DNA and RNA substrates by human apurinic/apyrimidinic endonuclease APE1

    Alekseeva, I. V., Kuznetsova, A. A., Bakman, A. S., Fedorova, O. S. & Kuznetsov, N. A., 1 Dec 2020, In: Biochimica et Biophysica Acta - General Subjects. 1864, 12, 13 p., 129718.

    Research output: Contribution to journalArticlepeer-review

  53. Lesion Recognition and Cleavage of Damage-Containing Quadruplexes and Bulged Structures by DNA Glycosylases

    Kuznetsova, A. A., Fedorova, O. S. & Kuznetsov, N. A., 30 Nov 2020, In: Frontiers in Cell and Developmental Biology. 8, 16 p., 595687.

    Research output: Contribution to journalArticlepeer-review

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