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  1. 2024

  2. A non-canonical nucleotide from viral genomes interferes with the oxidative DNA damage repair system

    Yudkina, A. V., Endutkin, A. V., Diatlova, E. A. & Zharkov, D. O., Jan 2024, In: DNA Repair. 133, 8 p., 103605.

    Research output: Contribution to journal › Article › peer-review

  3. Back-Up Base Excision DNA Repair in Human Cells Deficient in the Major AP Endonuclease, APE1

    Kim, D. V., Diatlova, E. A., Zharkov, T. D., Melentyev, V. S., Yudkina, A. V., Endutkin, A. V. & Zharkov, D. O., Jan 2024, In: International Journal of Molecular Sciences. 25, 1, 64.

    Research output: Contribution to journal › Article › peer-review

  4. Coordination between human DNA polymerase β and apurinic/apyrimidinic endonuclease 1 in the course of DNA repair

    Bakman, A. S., Boichenko, S. S., Kuznetsova, A. A., Ishchenko, A. A., Saparbaev, M. & Kuznetsov, N. A., Jan 2024, In: Biochimie. 216, p. 126-136 11 p.

    Research output: Contribution to journal › Article › peer-review

  5. The Effectiveness of Co-Inoculation by Consortia of Microorganisms Depends on the Type of Plant and the Soil Microbiome

    Sokolova, E. A., Mishukova, O. V., Hlistun, I. V., Tromenschleger, I. N., Tikunov, A. Y., Manakhov, A. D., Rogaev, E. I., Savenkov, O. A., Buyanova, M. D., Ivanov, I. V., Smirnova, N. V. & Voronina, E. N., Jan 2024, In: Plants. 13, 1, 116.

    Research output: Contribution to journal › Article › peer-review

  6. Bacteriophage Treatment of Infected Diabetic Foot Ulcers

    Morozova, V. V., Kozlova, Y. N., Ganichev, D. A. & Tikunova, N. V., 2024, Methods in Molecular Biology. Azeredo, J. & Sillankorva, S. (eds.). 2 ed. Humana Press, Vol. 2734. p. 197-205 9 p. (Methods in Molecular Biology; vol. 2734).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  7. Robust and Reproducible Protocol for Phage Genome "Rebooting" Using Transformation-Associated Recombination (TAR) Cloning into Yeast Centromeric Plasmid

    Baykov, I., Kurchenko, O., Mikhaylova, E., Morozova, V. V. & Tikunova, N. V., 2024, Methods in Molecular Biology. Azeredo, J. & Sillankorva, S. (eds.). 2 ed. Humana Press, Vol. 2734. p. 301-317 17 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  8. Successful Use of Phage and Antibiotics Therapy for the Eradication of Two Bacterial Pathogens from the Respiratory Tract of an Infant

    Morozova, V. V., Kozlova, Y. N. & Tikunova, N. V., 2024, Methods in Molecular Biology. Azeredo, J. & Sillankorva, S. (eds.). 2 ed. Humana Press, Vol. 2734. p. 237-243 7 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review

  9. 2023

  10. Expanding the list of sequence-agnostic enzymes for chromatin conformation capture assays with S1 nuclease

    Maria, G., Andrey, P., Artem, S., Nikita, T., Andrey, K., Evgeny, K., Oxana, R., Maxim, F. & Veniamin, F., 11 Dec 2023, In: Epigenetics & chromatin. 16, 1, 13 p., 48.

    Research output: Contribution to journal › Article › peer-review

  11. Exosomal Cargo in Ovarian Cancer Dissemination

    Dzhugashvili, E. & Tamkovich, S., 7 Dec 2023, In: Current issues in molecular biology. 45, 12, p. 9851-9867 17 p.

    Research output: Contribution to journal › Review article › peer-review

  12. A New Human Uveal Melanoma Cell Line: Melanin Production and Molecular Markers for Targeted Therapy

    Zhilnikova, M. V., Novak, D. D., Troitskaya, O. S., Nushtaeva, A. A., Biryukov, M. M., Zvereva, S. P., Varlamov, M. E., Koval, V. V., Stanishevskaya, O. M., Chernikh, D. V., Kononova, N. V., Atamanov, V. V. & Koval, O. A., Dec 2023, In: Biochemistry (Moscow) Supplement Series B: Biomedical Chemistry. 17, 4, p. 165-171 7 p.

    Research output: Contribution to journal › Article › peer-review

  13. A Novel Podophage StenR_269 Suggests a New Family in the Class Caudoviricetes

    Yakubovskij, V. I., Morozova, V. V., Kozlova, Y. N., Tikunov, A. Y., Babkin, I. V., Bardasheva, A. V., Zhirakovskaya, E. V., Baykov, I. K., Kaverina, G. B. & Tikunova, N. V., Dec 2023, In: Viruses. 15, 12, 2437.

    Research output: Contribution to journal › Article › peer-review

  14. Blood Plasma Circulating DNA-Protein Complexes: Involvement in Carcinogenesis and Prospects for Liquid Biopsy of Breast Cancer

    Shefer, A., Tutanov, O., Belenikin, M., Tsentalovich, Y. P. & Tamkovich, S., Dec 2023, In: Journal of Personalized Medicine. 13, 12, 1691.

    Research output: Contribution to journal › Article › peer-review

  15. Hydrolysis of Oligodeoxyribonucleotides on the Microarray Surface and in Solution by Catalytic Anti-DNA Antibodies in Systemic Lupus Erythematosus

    Novikova, T. S., Ermakov, E. A., Kostina, E. V., Sinyakov, A. N., Sizikov, A. E., Nevinsky, G. A. & Buneva, V. N., Dec 2023, In: Current issues in molecular biology. 45, 12, p. 9887-9903 17 p.

    Research output: Contribution to journal › Article › peer-review

  16. Plant Growth-Promoting Bacteria of Soil: Designing of Consortia Beneficial for Crop Production

    Timofeeva, A. M., Galyamova, M. R. & Sedykh, S. E., Dec 2023, In: Microorganisms. 11, 12, 2864.

    Research output: Contribution to journal › Review article › peer-review

  17. Plant Growth-Promoting Soil Bacteria: Nitrogen Fixation, Phosphate Solubilization, Siderophore Production, and Other Biological Activities

    Timofeeva, A. M., Галямова, М. Р. & Sedykh, S. E., Dec 2023, In: Plants. 12, 24, 4074.

    Research output: Contribution to journal › Review article › peer-review

  18. Self-Penetrating Oligonucleotide Derivatives: Features of Self-Assembly and Interactions with Serum and Intracellular Proteins

    Bauer, I., Ilina, E., Zharkov, T., Grigorieva, E., Chinak, O., Kupryushkin, M., Golyshev, V., Mitin, D., Chubarov, A., Khodyreva, S. & Dmitrienko, E., Dec 2023, In: Pharmaceutics. 15, 12, 2779.

    Research output: Contribution to journal › Article › peer-review

  19. Pharmacokinetic study of Tdp1 inhibitor resulted in a significant increase in antitumor effect in the treatment of Lewis lung carcinoma in mice by its combination with topotecan

    Okhina, A. A., Kornienko, T. E., Rogachev, A. D., Luzina, O. A., Popova, N. A., Nikolin, V. P., Zakharenko, A. L., Dyrkheeva, N. S., Pokrovsky, A. G., Salakhutdinov, N. F. & Lavrik, O. I., 30 Nov 2023, In: Journal of Pharmaceutical and Biomedical Analysis. 236, 9 p., 115731.

    Research output: Contribution to journal › Article › peer-review

  20. Cas9 is mostly orthogonal to human systems of DNA break sensing and repair

    Maltseva, E. A., Vasil'eva, I. A., Moor, N. A., Kim, D. V., Dyrkheeva, N. S., Kutuzov, M. M., Vokhtantsev, I. P., Kulishova, L. M., Zharkov, D. O. & Lavrik, O. I., 29 Nov 2023, In: PLoS ONE. 18, 11, 26 p., e0294683.

    Research output: Contribution to journal › Article › peer-review

  21. Integration of fluorescence in situ hybridization and chromosome-length genome assemblies revealed synteny map for guinea pig, naked mole-rat, and human

    Romanenko, S. A., Kliver, S. F., Serdyukova, N. A., Perelman, P. L., Trifonov, V. A., Seluanov, A., Gorbunova, V., Azpurua, J., Pereira, J. C., Ferguson-Smith, M. A. & Graphodatsky, A. S., 29 Nov 2023, In: Scientific Reports. 13, 1, 12 p., 21055.

    Research output: Contribution to journal › Article › peer-review

  22. BRACNAC: A BRCA1 and BRCA2 Copy Number Alteration Caller from Next-Generation Sequencing Data

    Kechin, A., Boyarskikh, U., Borobova, V., Khrapov, E., Subbotin, S. & Filipenko, M., 22 Nov 2023, In: International Journal of Molecular Sciences. 24, 23, 16630.

    Research output: Contribution to journal › Article › peer-review

  23. The Molecular Basis for Selectivity of the Cytotoxic Response of Lung Adenocarcinoma Cells to Cold Atmospheric Plasma

    Biryukov, M., Semenov, D., Kryachkova, N., Polyakova, A., Patrakova, E., Troitskaya, O., Milakhina, E., Poletaeva, J., Gugin, P., Ryabchikova, E., Zakrevsky, D., Schweigert, I. & Koval, O., 20 Nov 2023, In: Biomolecules. 13, 11, 1672.

    Research output: Contribution to journal › Article › peer-review

  24. A comparative investigation of equimolar Ni-, Ru-, Rh- and Pt-based composite structured catalysts for energy-efficient methane reforming

    Ruban, N. V., Rogozhnikov, V. N., Stonkus, O. A., Emelyanov, V. A., Pakharukova, V. P., Svintsitskiy, D. A., Zazhigalov, S. V., Zagoruiko, A. N., Snytnikov, P. V., Sobyanin, V. A. & Potemkin, D. I., 15 Nov 2023, In: Fuel. 352, 14 p., 128973.

    Research output: Contribution to journal › Article › peer-review

  25. Methods for Assessment of Nucleotide Excision Repair Efficiency

    Popov, A. A., Petruseva, I. O., Naumenko, N. V. & Lavrik, O. I., Nov 2023, In: Biochemistry (Moscow). 88, 11, p. 1844-1856 13 p.

    Research output: Contribution to journal › Review article › peer-review

  26. Response of PRIMPOL-Knockout Human Lung Adenocarcinoma A549 Cells to Genotoxic Stress

    Gromova, A. S., Boldinova, E. O., Kim, D. V., Chuprov-Netochin, R. N., Leonov, S. V., Pustovalova, M. V., Zharkov, D. O. & Makarova, A. V., Nov 2023, In: Biochemistry (Moscow). 88, 11, p. 1933-1943 11 p.

    Research output: Contribution to journal › Article › peer-review

  27. FUS RRM regulates poly(ADP-ribose) levels after transcriptional arrest and PARP-1 activation on DNA damage

    Mamontova, E. M., Clément, M-J., Sukhanova, M. V., Joshi, V., Bouhss, A., Rengifo-Gonzalez, J. C., Desforges, B., Hamon, L., Lavrik, O. I. & Pastré, D., 31 Oct 2023, In: Cell Reports. 42, 10, 25 p., 113199.

    Research output: Contribution to journal › Article › peer-review

  28. Genomes of a Novel Group of Phages That Use Alternative Genetic Code Found in Human Gut Viromes

    Babkin, I., Tikunov, A., Morozova, V., Matveev, A., Morozov, V. V. & Tikunova, N., 18 Oct 2023, In: International Journal of Molecular Sciences. 24, 20, 15302.

    Research output: Contribution to journal › Article › peer-review

  29. Bioinformatic Analysis Reveals the Role of Translation Elongation Efficiency Optimisation in the Evolution of Ralstonia Genus

    Korenskaia, A. Y., Matushkin, Y. G., Mustafin, Z. S., Lashin, S. A. & Klimenko, A. I., Oct 2023, In: Biology. 12, 10, 1338.

    Research output: Contribution to journal › Article › peer-review

  30. Historical Aspects of Restriction Endonucleases as Intelligent Scissors for Genetic Engineering

    Alekseeva, I. V. & Kuznetsov, N. A., Oct 2023, In: Fermentation. 9, 10, 874.

    Research output: Contribution to journal › Article › peer-review

  31. Nickel-Based Ni–Ce1–xZrxO2 Catalysts Prepared by the Pechini Method for CO2 Methanation

    Pakharukova, V. P., Stonkus, O. A., Kharchenko, N. A., Rogozhnikov, V. N., Chesalov, Y. A., Gorlova, A. M., Saraev, A. A. & Potemkin, D. I., Oct 2023, In: Kinetics and Catalysis. 64, 5, p. 671-682 12 p.

    Research output: Contribution to journal › Article › peer-review

  32. Direct Enzyme Engineering of B Family DNA Polymerases for Biotechnological Approaches

    Kuznetsova, A. A. & Kuznetsov, N. A., 30 Sept 2023, In: Bioengineering (Basel, Switzerland). 10, 10, 1150.

    Research output: Contribution to journal › Review article › peer-review

  33. Base Excision DNA Repair in Plants: Arabidopsis and Beyond

    Grin, I. R., Petrova, D. V., Endutkin, A. V., Ma, C., Yu, B., Li, H. & Zharkov, D. O., 29 Sept 2023, In: International Journal of Molecular Sciences. 24, 19, 14746.

    Research output: Contribution to journal › Review article › peer-review

  34. Identification of Antibody-Mediated Hydrolysis Sites of Oligopeptides Corresponding to the SARS-CoV-2 S-Protein by MALDI-TOF Mass Spectrometry

    Timofeeva, A. M., Sedykh, S. E., Dmitrenok, P. S. & Nevinsky, G. A., 20 Sept 2023, In: International Journal of Molecular Sciences. 24, 18, 14342.

    Research output: Contribution to journal › Article › peer-review

  35. Natural Antibodies Produced in Vaccinated Patients and COVID-19 Convalescents Recognize and Hydrolyze Oligopeptides Corresponding to the S-Protein of SARS-CoV-2

    Timofeeva, A. M., Sedykh, S. E., Sedykh, T. A. & Nevinsky, G. A., 15 Sept 2023, In: Vaccines. 11, 9, 1494.

    Research output: Contribution to journal › Article › peer-review

  36. Conformational Dynamics of Biopolymers in the Course of Their Interaction: Multifaceted Approaches to the Analysis by the Stopped-Flow Technique with Fluorescence Detection

    Kuznetsov, N. A., Sept 2023, In: Photonics. 10, 9, 1033.

    Research output: Contribution to journal › Article › peer-review

  37. Novel B-Cell Epitopes of Non-Neutralizing Antibodies in the Receptor-Binding Domain of the SARS-CoV-2 S-Protein with Different Effects on the Severity of COVID-19

    Matveev, A. L., Pyankov, O. V., Khlusevich, Y. A., Tyazhelkova, O. V., Emelyanova, L. A., Timofeeva, A. M., Shipovalov, A. V., Chechushkov, A. V., Zaitseva, N. S., Kudrov, G. A., Yusubalieva, G. M., Yussubaliyeva, S. M., Zhukova, O. A., Tikunov, A. Y., Baklaushev, V. P., Sedykh, S. E., Lifshits, G. I. & Tikunova, N. V., Sept 2023, In: Biochemistry (Moscow). 88, 9, p. 1205-1214 10 p.

    Research output: Contribution to journal › Article › peer-review

  38. Applicability of Diagnostic Criteria and High Prevalence of Familial Dysbetalipoproteinemia in Russia: A Pilot Study

    Blokhina, A. V., Ershova, A. I., Kiseleva, A. V., Sotnikova, E. A., Zharikova, A. A., Zaicenoka, M., Vyatkin, Y. V., Ramensky, V. E., Kutsenko, V. A., Shalnova, S. A., Meshkov, A. N. & Drapkina, O. M., 24 Aug 2023, In: International Journal of Molecular Sciences. 24, 17, 13159.

    Research output: Contribution to journal › Article › peer-review

  39. Renaming of genera Ebolavirus and Marburgvirus to Orthoebolavirus and Orthomarburgvirus, respectively, and introduction of binomial species names within family Filoviridae

    Biedenkopf, N., Bukreyev, A., Chandran, K., Di Paola, N., Formenty, P. B. H., Griffiths, A., Hume, A. J., Mühlberger, E., Netesov, S. V., Palacios, G., Pawęska, J. T., Smither, S., Takada, A., Wahl, V. & Kuhn, J. H., 3 Aug 2023, In: Archives of Virology. 168, 8, 6 p., 220.

    Research output: Contribution to journal › Article › peer-review

  40. Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)

    ICTV Report Consortium & Нетёсов, С. В., 1 Aug 2023, In: Journal of General Virology. 104, 8, 55 p.

    Research output: Contribution to journal › Article › peer-review

  41. Alternative Mechanisms of Mutagenesis at mCpG Sites during Replication and Repair

    Shilkin, E. S., Petrova, D. V., Zharkov, D. O. & Makarova, A. V., Aug 2023, In: Molecular Biology. 57, 4, p. 584-592 9 p.

    Research output: Contribution to journal › Article › peer-review

  42. Ceria–Zirconia Supported Platinum Catalysts for the Water-Gas Shift Reaction: The Influence of Support Composition

    Gorlova, A. M., Pakharukova, V. P., Stonkus, O. A., Rogozhnikov, V. N., Gladky, A. Y., Snytnikov, P. V. & Potemkin, D. I., Aug 2023, In: Kinetics and Catalysis. 64, 4, p. 449-457 9 p.

    Research output: Contribution to journal › Article › peer-review

  43. Structure of an Ice-Binding Protein from Myoxocephalus octodecemspinosus Determined by Molecular Dynamics and Based on Circular Dichroism Spectra

    Oleinik, G. A., Zhdanova, P., Koval, V. V., Chernonosov, A. A. & Baranova, S. V., Aug 2023, In: Biophysics (Russian Federation). 68, 4, p. 513-518 6 p., 2.

    Research output: Contribution to journal › Article › peer-review

  44. Vertical Distribution of Communities of Epiphytic Myxomycetes on Woody Introduced Plants in Siberia

    Vlasenko, A. V., Tomoshevich, M. A. & Chelobanov, B. P., Aug 2023, In: Contemporary Problems of Ecology. 16, 4, p. 466-478 13 p.

    Research output: Contribution to journal › Article › peer-review

  45. Metal-oxide catalysts for CO TOX and PROX processes in the Pt–Cr/Mo/W systems

    Lagunova, V., Filatov, E., Plyusnin, P., Kostin, G., Urlukov, A., Potemkin, D. & Korenev, S., 29 Jul 2023, In: International Journal of Hydrogen Energy. 48, 64, p. 25133-25143 11 p.

    Research output: Contribution to journal › Article › peer-review

  46. Inner Amino Acid Contacts Are Key Factors of Multistage Structural Rearrangements of DNA and Affect Substrate Specificity of Apurinic/Apyrimidinic Endonuclease APE1

    Bulygin, A. A., Syryamina, V. N., Kuznetsova, A. A., Novopashina, D. S., Dzuba, S. A. & Kuznetsov, N. A., 14 Jul 2023, In: International Journal of Molecular Sciences. 24, 14, 11474.

    Research output: Contribution to journal › Article › peer-review

  47. Individual Contributions of Amido Acid Residues Tyr122, Ile168, and Asp173 to the Activity and Substrate Specificity of Human DNA Dioxygenase ABH2

    Davletgildeeva, A. T., Tyugashev, T. E., Zhao, M., Kuznetsov, N. A., Ishchenko, A. A., Saparbaev, M. & Kuznetsova, A. A., 13 Jul 2023, In: Cells. 12, 14, 1839.

    Research output: Contribution to journal › Article › peer-review

  48. Double oxalates of Rh(III) with Ni(II) and Co(II) – Effective precursors of nanoalloys for hydrocarbons steam reforming

    Zadesenets, A. V., Garkul, I. A., Filatov, E. Y., Sukhikh, A. S., Plusnin, P. E., Urlukov, A. S., Uskov, S. I., Potemkin, D. I. & Korenev, S. V., 12 Jul 2023, In: International Journal of Hydrogen Energy. 48, 59, p. 22428-22438 11 p.

    Research output: Contribution to journal › Article › peer-review

  49. Abasic site-peptide cross-links are blocking lesions repaired by AP endonucleases

    Yudkina, A. V., Bulgakov, N. A., Kim, D. V., Baranova, S. V., Ishchenko, A. A., Saparbaev, M. K., Koval, V. V. & Zharkov, D. O., 7 Jul 2023, In: Nucleic Acids Research. 51, 12, p. 6321-6336 16 p., gkad423.

    Research output: Contribution to journal › Article › peer-review

  50. Cloning, Expression, and Characterization of Family A DNA Polymerase from Massilia aurea

    Kuznetsova, A. A., Bedritskikh, K. S., Bulygin, A. A. & Kuznetsov, N. A., Jul 2023, In: Fermentation. 9, 7, 650.

    Research output: Contribution to journal › Article › peer-review

  51. Bypass of Abasic Site-Peptide Cross-Links by Human Repair and Translesion DNA Polymerases

    Yudkina, A. V., Barmatov, A. E., Bulgakov, N. A., Boldinova, E. O., Shilkin, E. S., Makarova, A. V. & Zharkov, D. O., 29 Jun 2023, In: International Journal of Molecular Sciences. 24, 13, 10877.

    Research output: Contribution to journal › Article › peer-review

  52. Antibodies Capable of Enhancing SARS-CoV-2 Infection Can Circulate in Patients with Severe COVID-19

    Matveev, A., Pyankov, O., Khlusevich, Y., Tyazhelkova, O., Emelyanova, L., Timofeeva, A., Shipovalov, A., Chechushkov, A., Zaitseva, N., Kudrov, G., Yusubalieva, G., Yussubaliyeva, S., Zhukova, O., Baklaushev, V., Sedykh, S., Lifshits, G., Tikunov, A. & Tikunova, N., 28 Jun 2023, In: International Journal of Molecular Sciences. 24, 13, 10799.

    Research output: Contribution to journal › Article › peer-review

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