1. CutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing

    Kechin, A., Boyarskikh, U., Kel, A. & Filipenko, M., 1 Nov 2017, In: Journal of Computational Biology. 24, 11, p. 1138-1143 6 p.

    Research output: Contribution to journalArticlepeer-review

  2. Cytosolic YB-1 and NSUN2 are the only proteins recognizing specific motifs present in mRNAs enriched in exosomes

    Kossinova, O. A., Gopanenko, A. V., Tamkovich, S. N., Krasheninina, O. A., Tupikin, A. E., Kiseleva, E., Yanshina, D. D., Malygin, A. A., Ven'yaminova, A. G., Kabilov, M. R. & Karpova, G. G., 1 Jun 2017, In: Biochimica et Biophysica Acta - Proteins and Proteomics. 1865, 6, p. 664-673 10 p.

    Research output: Contribution to journalArticlepeer-review

  3. Cytotoxic Activity of a Cold Atmospheric Plasma Jet in Relation to a 3D Cell Model of Human Breast Cancer

    Patrakova, E. A., Biryukov, M. M., Troitskaya, O. S., Novak, D. D., Milakhina, E. V., Gugin, P. P., Zakrevsky, D. E., Schweigert, I. V. & Koval, O. A., Jun 2023, In: Cell and Tissue Biology. 17, 3, p. 233-246 14 p.

    Research output: Contribution to journalArticlepeer-review

  4. Cytotoxic and antitumor activity of lactaptin in combination with autophagy inducers and inhibitors

    Bagamanshina, A. V., Troitskaya, O. S., Nushtaeva, A. A., Yunusova, A. Y., Starykovych, M. O., Kuligina, E. V., Kit, Y. Y., Richter, M., Wohlfromm, F., Kähne, T., Lavrik, I. N., Richter, V. A. & Koval, O. A., 17 Jun 2019, In: BioMed Research International. 2019, p. 4087160 16 p., 4087160.

    Research output: Contribution to journalArticlepeer-review

  5. Data for isolation and properties analysis of diastereomers of a mono-substituted phosphoryl guanidine trideoxyribonucleotide

    Lomzov, A. A., Kupryushkin, M. S., Shernyukov, A. V., Nekrasov, M. D., Dovydenko, I. S., Stetsenko, D. A. & Pyshnyi, D. V., 1 Aug 2019, In: Data in Brief. 25, p. 104148 25 p., 104148.

    Research output: Contribution to journalArticlepeer-review

  6. Data on PAGE analysis and MD simulation for the interaction of endonuclease Apn1 from Saccharomyces cerevisiae with DNA substrates containing 5,6-dihydrouracyl and 2-aminopurine

    Dyakonova, E. S., Koval, V. V., Lomzov, A. A., Ishchenko, A. A. & Fedorova, O. S., 1 Oct 2018, In: Data in Brief. 20, p. 1515-1524 10 p.

    Research output: Contribution to journalArticlepeer-review

  7. Dataset for dynamics and conformational changes in human NEIL2 protein analyzed by integrative structural biology approach

    Zhdanova, P. V., Ishchenko, A. A., Chernonosov, A. A., Zharkov, D. O. & Koval, V. V., Feb 2022, In: Data in Brief. 40, 107760.

    Research output: Contribution to journalArticlepeer-review

  8. Dataset for Spectroscopic, Structural and Dynamic Analysis of Human Fe(II)/2OG-Dependent Dioxygenase ALKBH3

    Kanazhevskaya, L. Y., Gorbunov, A. A., Zhdanova, P. V. & Koval, V. V., Mar 2023, In: Data. 8, 3, 57.

    Research output: Contribution to journalArticlepeer-review

  9. Degradation of core-shell Au@SiO2 nanoparticles in biological media

    Ryabchikova, E. I., Chelobanov, B. P., Parkhomenko, R. G., Korchagina, K. V. & Basova, T. V., Aug 2017, In: Microporous and Mesoporous Materials. 248, p. 46-53 8 p.

    Research output: Contribution to journalArticlepeer-review

  10. Dehydroabietylamine-based thiazolidin-4-ones and 2-thioxoimidazolidin-4-ones as novel tyrosyl-DNA phosphodiesterase 1 inhibitors

    Kovaleva, K., Mamontova, E., Yarovaya, O., Zakharova, O., Zakharenko, A., Lavrik, O. & Salakhutdinov, N., Nov 2021, In: Molecular Diversity. 25, 4, p. 2389-2397 9 p.

    Research output: Contribution to journalArticlepeer-review

  11. Dehydroabietylamine Ureas and Thioureas as Tyrosyl-DNA Phosphodiesterase 1 Inhibitors That Enhance the Antitumor Effect of Temozolomide on Glioblastoma Cells

    Kovaleva, K., Oleshko, O., Mamontova, E., Yarovaya, O., Zakharova, O., Zakharenko, A., Kononova, A., Dyrkheeva, N., Cheresiz, S., Pokrovsky, A., Lavrik, O. & Salakhutdinov, N., 27 Sept 2019, In: Journal of Natural Products. 82, 9, p. 2443-2450 8 p.

    Research output: Contribution to journalArticlepeer-review

  12. Dendriplex-Impregnated Hydrogels With Programmed Release Rate

    Apartsin, E., Venyaminova, A., Majoral, J. P. & Caminade, A. M., 5 Jan 2022, In: Frontiers in Chemistry. 9, 780608.

    Research output: Contribution to journalArticlepeer-review

  13. Derivation of Ringed Seal (Phoca hispida) Induced Multipotent Stem Cells

    Beklemisheva, V. R., Belokopytova, P. S., Fishman, V. S. & Menzorov, A. G., 1 Dec 2021, In: Cellular reprogramming. 23, 6, p. 326-335 10 p.

    Research output: Contribution to journalArticlepeer-review

  14. Design and properties of ligand-conjugated guanine oligonucleotides for recovery of mutated G-quadruplexes

    Takahashi, S., Chelobanov, B., Kim, K. T., Kim, B. H., Stetsenko, D. & Sugimoto, N., 6 Dec 2018, In: Molecules. 23, 12, 13 p., 3228.

    Research output: Contribution to journalArticlepeer-review

  15. Design of Nanoalloyed Catalysts for Hydrogen Production Processes

    Potemkin, D. I., Snytnikov, P. V., Badmaev, S. D., Gorlova, A. M., Zadesenets, A. V., Filatov, E. Y., Plyusnin, P. E., Shubin, Y. V., Korenev, S. V. & Sobyanin, V. A., Mar 2021, In: Nanobiotechnology reports. 16, 2, p. 195-201 7 p.

    Research output: Contribution to journalArticlepeer-review

  16. Design of the New Closo-Dodecarborate-Containing Gemcitabine Analogue for the Albumin-Based Theranostics Composition

    Raskolupova, V. I., Wang, M., Dymova, M. A., Petrov, G. O., Shchudlo, I. M., Taskaev, S. Y., Abramova, T. V., Godovikova, T. S., Silnikov, V. N. & Popova, T. V., 15 Mar 2023, In: Molecules (Basel, Switzerland). 28, 6, 2672.

    Research output: Contribution to journalArticlepeer-review

  17. Design, Synthesis and Antibacterial Activity of Coumarin-1,2,3-triazole Hybrids Obtained from Natural Furocoumarin Peucedanin

    Lipeeva, A. V., Zakharov, D. O., Burova, L. G., Frolova, T. S., Baev, D. S., Shirokikh, I. V., Evstropov, A. N., Sinitsyna, O. I., Tolsikova, T. G. & Shults, E. E., 5 Jun 2019, In: Molecules. 24, 11, 23 p., 2126.

    Research output: Contribution to journalArticlepeer-review

  18. Design, Synthesis, and Biological Investigation of Novel Classes of 3-Carene-Derived Potent Inhibitors of TDP1

    Il'ina, I. V., Dyrkheeva, N. S., Zakharenko, A. L., Sidorenko, A. Y., Li-Zhulanov, N. S., Korchagina, D. V., Chand, R., Ayine-Tora, D. M., Chepanova, A. A., Zakharova, O. D., Ilina, E. S., Reynisson, J., Malakhova, A. A., Medvedev, S. P., Zakian, S. M., Volcho, K. P., Salakhutdinov, N. F. & Lavrik, O. I., Aug 2020, In: Molecules (Basel, Switzerland). 25, 15, 22 p., 3496.

    Research output: Contribution to journalArticlepeer-review

  19. Design, synthesis, and molecular docking study of new tyrosyl-dna phosphodiesterase 1 (Tdp1) inhibitors combining resin acids and adamantane moieties

    Kovaleva, K., Yarovaya, O., Ponomarev, K., Cheresiz, S., Azimirad, A., Chernyshova, I., Zakharenko, A., Konev, V., Khlebnikova, T., Mozhaytsev, E., Suslov, E., Nilov, D., Švedas, V., Pokrovsky, A., Lavrik, O. & Salakhutdinov, N., 1 May 2021, In: Pharmaceuticals. 14, 5, 422.

    Research output: Contribution to journalArticlepeer-review

  20. Detection of causative agents of tick-borne rickettsioses in Western Siberia, Russia: identification of Rickettsia raoultii and Rickettsia sibirica DNA in clinical samples

    Igolkina, Y., Krasnova, E., Rar, V., Savelieva, M., Epikhina, T., Tikunov, A., Khokhlova, N., Provorova, V. & Tikunova, N., 1 Feb 2018, In: Clinical Microbiology and Infection. 24, 2, p. 199.e9-199.e12 4 p.

    Research output: Contribution to journalArticlepeer-review

  21. Detection of Point Mutations and Chromosomal Translocations Based on Massive Parallel Sequencing of Enriched 3C Libraries

    Mozheiko, E. A. & Fishman, V. S., 1 Oct 2019, In: Russian Journal of Genetics. 55, 10, p. 1273-1281 9 p.

    Research output: Contribution to journalArticlepeer-review

  22. Determination of cell concentrations in stationary growing Lactobacillus salivarius cultures in relation to formation of biofilms and cell aggregates

    Afonyushkin, V. N., Kechin, A. A., Tromenshleger, I. N., Filipenko, M. L. & Smetanina, M. A., 1 Nov 2017, In: Microbiology (Russian Federation). 86, 6, p. 793-798 6 p.

    Research output: Contribution to journalArticlepeer-review

  23. Deterministic versus stochastic model of reprogramming: New evidence from cellular barcoding technique

    Yunusova, A. M., Fishman, V. S., Vasiliev, G. V. & Battulin, N. R., Apr 2017, In: Open Biology. 7, 4, 13 p., 160311.

    Research output: Contribution to journalArticlepeer-review

  24. Development and characterization of novel 2′-F-RNA aptamers specific to human total and glycated hemoglobins

    Davydova, A., Vorobyeva, M., Bashmakova, E., Vorobjev, P., Krasheninina, O., Tupikin, A., Kabilov, M., Krasitskaya, V., Frank, L. & Venyaminova, A., 1 Apr 2019, In: Analytical Biochemistry. 570, p. 43-50 8 p.

    Research output: Contribution to journalArticlepeer-review

  25. Development and Validation of a Method of Liquid Chromatography Coupled with Tandem Mass Spectrometry for Quantification of ST-246 (Tecovirimat) in Human Plasma

    Oleinik, G. A., Koval, V. V., Usova, S. V., Shishkina, L. N. & Chernonosov, A. A., 1 Jun 2022, In: Molecules. 27, 11, 3577.

    Research output: Contribution to journalArticlepeer-review

  26. Development of a stable eukaryotic strain producing fully human monoclonal antibody on the basis of the human antibody against ectromelia virus

    Matveev, A. L., Khlusevich, Y. A., Baykov, I. K., Babkin, I. V., Goncharova, E. P., Morozova, V. V. & Tikunova, N. V., 1 Jan 2017, In: Вавиловский журнал генетики и селекции. 21, 8, p. 993-1000 8 p.

    Research output: Contribution to journalArticlepeer-review

  27. Development of cold atmospheric plasma jet therapy for tumor treatment

    Schweigert, I. V., Zakrevsky, D., Gugin, P., Milakhina, E., Golubitskaya, E., Troitskaya, O. & Koval, O., 26 Oct 2020, High-Energy Processes in Condensed Matter, HEPCM 2020: Proceedings of the XXVII Conference on High-Energy Processes in Condensed Matter, Dedicated to the 90th Anniversary of the Birth of RI Soloukhin. Fomin, V. M. (ed.). American Institute of Physics Inc., 5 p. 030087. (AIP Conference Proceedings; vol. 2288).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

  28. Development of constructs based on the CRISPR/Cas9 system for studying the role of non-canonical mismatch repair in editing the epigenome

    Kakhkharova, Z. I., Khantakova, D. V., Petrova, D. V. & Grin, I. R., Jul 2019, In: FEBS Open Bio. 9, p. 399-399 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  29. Development of Novel Oncolytic Vector Based on Alternative Adenovirus Serotype 6 for Glioblastoma and Breast Cancer Therapy

    Romanenko, M., Osipov, I., Kutseikin, S., Sizova, M., Paramonik, A., Grazhdantseva, A., Kochneva, G., Davydova, J. & Netesov, S., 27 Apr 2021, In: Molecular Therapy. 29, 4, p. 6-6 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  30. Development of Oncolytic Vectors Based on Human Adenovirus Type 6 for Cancer Treatment

    Osipov, I. D., Vasikhovskaia, V. A., Zabelina, D. S., Kutseikin, S. S., Grazhdantseva, A. A., Kochneva, G. V., Davydova, J., Netesov, S. V. & Romanenko, M. V., 7 Jan 2023, In: Viruses. 15, 1, 182.

    Research output: Contribution to journalArticlepeer-review

  31. Diastereomers of a mono-substituted phosphoryl guanidine trideoxyribonucleotide: Isolation and properties

    Lomzov, A. A., Kupryushkin, M. S., Shernyukov, A. V., Nekrasov, M. D., Dovydenko, I. S., Stetsenko, D. A. & Pyshnyi, D. V., 11 Jun 2019, In: Biochemical and Biophysical Research Communications. 513, 4, p. 807-811 5 p.

    Research output: Contribution to journalArticlepeer-review

  32. Differences in Transcriptomic Profiles of Brain and Thyroid Tumors with NTRK Gene Rearrangement

    Kechin, A. A., Koryukov, M. A., Smertina, M. A., Borobova, V. S., Oscorbin, I. P., Ivanov, A. A., Bakharev, S. Y., Boyarskikh, U. A., Kushlinskii, N. E. & Filipenko, M. L., May 2023, In: Bulletin of Experimental Biology and Medicine. 175, 1, p. 78-85 8 p.

    Research output: Contribution to journalArticlepeer-review

  33. Different Rates of the SLC26A4-Related Hearing Loss in Two Indigenous Peoples of Southern Siberia (Russia)

    Danilchenko, V. Y., Zytsar, M. V., Maslova, E. A., Bady-Khoo, M. S., Barashkov, N. A., Morozov, I. V., Bondar, A. A. & Posukh, O. L., Dec 2021, In: Diagnostics. 11, 12, 2378.

    Research output: Contribution to journalArticlepeer-review

  34. Directed evolution as a tool for the selection of oncolytic RNA viruses with desired phenotypes

    Zaindiutnov, S. S., Kochneva, G., Netesov, S., Chumakov, P. M. & Matveeva, O., 12 Jul 2019, In: Oncolytic Virotherapy. 8, p. 9-26 18 p.

    Research output: Contribution to journalReview articlepeer-review

  35. Direct Enzyme Engineering of B Family DNA Polymerases for Biotechnological Approaches

    Kuznetsova, A. A. & Kuznetsov, N. A., 30 Sept 2023, In: Bioengineering (Basel, Switzerland). 10, 10, 1150.

    Research output: Contribution to journalReview articlepeer-review

  36. Displacement of Slow-Turnover DNA Glycosylases by Molecular Traffic on DNA

    Yudkina, A. V., Endutkin, A. V., Diatlova, E. A., Moor, N. A., Vokhtantsev, I. P., Grin, I. R. & Zharkov, D. O., Aug 2020, In: Genes. 11, 8, p. 1-21 21 p., 866.

    Research output: Contribution to journalArticlepeer-review

  37. Distinct Mechanisms of Target Search by Endonuclease VIII-like DNA Glycosylases

    Diatlova, E. A., Mechetin, G. V. & Zharkov, D. O., Oct 2022, In: Cells. 11, 20, 3192.

    Research output: Contribution to journalArticlepeer-review

  38. Diversity of Archaea in Bottom Sediments of the Discharge Areas With Oil- and Gas-Bearing Fluids in Lake Baikal

    Lomakina, A. V., Mamaeva, E. V., Galachyants, Y. P., Petrova, D. P., Pogodaeva, T. V., Shubenkova, O. V., Khabuev, A. V., Morozov, I. V. & Zemskaya, T. I., 2 Jan 2018, In: Geomicrobiology Journal. 35, 1, p. 50-63 14 p.

    Research output: Contribution to journalArticlepeer-review

  39. Diversity of immunoglobulin light chain genes in non-teleost ray-finned fish uncovers IgL subdivision into five ancient isotypes

    Guselnikov, S. V., Baranov, K. O., Najakshin, A. M., Mechetina, L. V., Chikaev, N. A., Makunin, A. I., Kulemzin, S. V., Andreyushkova, D. A., Stöck, M., Wuertz, S., Gessner, J., Warren, W. C., Schartl, M., Trifonov, V. A. & Taranin, A. V., 28 May 2018, In: Frontiers in Immunology. 9, MAY, p. 1079 15 p., 1079.

    Research output: Contribution to journalArticlepeer-review

  40. DNA barcoding reveals that injected transgenes are predominantly processed by homologous recombination in mouse zygote

    Smirnov, A., Fishman, V., Yunusova, A., Korablev, A., Serova, I., Skryabin, B. V., Rozhdestvensky, T. S. & Battulin, N., 24 Jan 2020, In: Nucleic Acids Research. 48, 2, p. 719-735 17 p.

    Research output: Contribution to journalArticlepeer-review

  41. DNA Bearing Bulky Fluorescent and Photoreactive Damage in Both Strands as Substrates of the Nucleotide Excision Repair System

    Lukyanchikova, N. V., Petruseva, I. O., Evdokimov, A. N., Koroleva, L. S. & Lavrik, O. I., 1 Mar 2018, In: Molecular Biology. 52, 2, p. 237-246 10 p.

    Research output: Contribution to journalArticlepeer-review

  42. DNA Bearing Bulky Fluorescent and Photoreactive Damage in Both Strands as Substrates of the Nucleotide Excision Repair System

    Lukyanchikova, N. V., Petruseva, I. O., Evdokimov, A. N., Koroleva, L. S. & Lavrik, O. I., 27 Apr 2018, In: Molekuliarnaia biologiia. 52, 2, p. 277-288 12 p.

    Research output: Contribution to journalArticlepeer-review

  43. DNA Binding to Gold Nanoparticles through the Prism of Molecular Selection: Sequence-Affinity Relation

    Vorobjev, P., Epanchintseva, A., Lomzov, A., Tupikin, A., Kabilov, M., Pyshnaya, I. & Pyshnyi, D., 18 Jun 2019, In: Langmuir. 35, 24, p. 7916-7928 13 p.

    Research output: Contribution to journalArticlepeer-review

  44. DNA complexes with human apurinic/apyrimidinic endonuclease 1: structural insights revealed by pulsed dipolar EPR with orthogonal spin labeling

    Krumkacheva, O. A., Shevelev, G. Y., Lomzov, A. A., Dyrkheeva, N. S., Kuzhelev, A. A., Koval, V. V., Tormyshev, V. M., Polienko, Y. F., Fedin, M. V., Pyshnyi, D. V., Lavrik, O. I. & Bagryanskaya, E. G., 5 Sept 2019, In: Nucleic Acids Research. 47, 15, p. 7767-7780 14 p.

    Research output: Contribution to journalArticlepeer-review

  45. DNA Damage Response and Repair in Boron Neutron Capture Therapy

    Mechetin, G. V. & Zharkov, D. O., 2 Jan 2023, In: Genes. 14, 1, 127.

    Research output: Contribution to journalReview articlepeer-review

  46. DNA damage response and resistance of cancer stem cells

    Abad, E., Graifer, D. & Lyakhovich, A., 1 Apr 2020, In: Cancer Letters. 474, p. 106-117 12 p.

    Research output: Contribution to journalReview articlepeer-review

  47. DNA Deformation-Coupled Recognition of 8-Oxoguanine: Conformational Kinetic Gating in Human DNA Glycosylase

    Li, H., Endutkin, A. V., Bergonzo, C., Fu, L., Grollman, A., Zharkov, D. O. & Simmerling, C., 22 Feb 2017, In: Journal of the American Chemical Society. 139, 7, p. 2682-2692 11 p.

    Research output: Contribution to journalArticlepeer-review

  48. DNA glycosylases for 8-oxoguanine repair in Staphylococcus aureus

    Endutkin, A. V., Panferova, E. P., Barmatov, A. E. & Zharkov, D. O., Sept 2021, In: DNA Repair. 105, p. 103160 103160.

    Research output: Contribution to journalArticlepeer-review

  49. DNA lesions against genome editing: how Cas9 cleaves the substrates with damages

    Vokhtantsev, I. P., Endutkin, A. V., Kulishova, L. M. & Zharkov, O., Jul 2019, In: FEBS Open Bio. 9, p. 397-397 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  50. DNA Probes for Analysis of the Activity of Key Enzymes of the Base Excision DNA Repair Pathway in Human Cells

    Alekseeva, I. V., Kuznetsova, A. A., Kladova, O. A., Shender, V. O., Schneider, P. V., Fedorova, O. S. & Kuznetsov, N. A., Apr 2023, In: Molecular Biology. 57, 2, p. 299-311 13 p.

    Research output: Contribution to journalArticlepeer-review

  51. DNA Repair Enzymes as Promising Targets in Oncotherapy

    Zakharenko, A. L., Lebedeva, N. A. & Lavrik, O. I., 1 Jan 2018, In: Russian Journal of Bioorganic Chemistry. 44, 1, p. 1-18 18 p.

    Research output: Contribution to journalReview articlepeer-review

  52. Do Sputnik V Vaccine-Induced Antibodies Protect Against Seasonal Coronaviruses? Case Study

    Koryukov, M., Kechin, A., Shamovskaya, D., Timofeeva, A. & Filipenko, M., Mar 2022, In: Viral Immunology. 35, 2, p. 138-141 4 p.

    Research output: Contribution to journalArticlepeer-review

  53. Double oxalates of Rh(III) with Ni(II) and Co(II) – Effective precursors of nanoalloys for hydrocarbons steam reforming

    Zadesenets, A. V., Garkul, I. A., Filatov, E. Y., Sukhikh, A. S., Plusnin, P. E., Urlukov, A. S., Uskov, S. I., Potemkin, D. I. & Korenev, S. V., 12 Jul 2023, In: International Journal of Hydrogen Energy. 48, 59, p. 22428-22438 11 p.

    Research output: Contribution to journalArticlepeer-review

  54. Double-Stranded DNA Fragments Bearing Unrepairable Lesions and Their Internalization into Mouse Krebs-2 Carcinoma Cells

    Dolgova, E. V., Evdokimov, A. N., Proskurina, A. S., Efremov, Y. R., Bayborodin, S. I., Potter, E. A., Popov, A. A., Petruseva, I. O., Lavrik, O. I. & Bogachev, S. S., 1 Oct 2019, In: Nucleic Acid Therapeutics. 29, 5, p. 278-290 13 p.

    Research output: Contribution to journalArticlepeer-review

  55. Dual DNA topoisomerase 1 and tyrosyl-DNA phosphodiesterase 1 inhibition for improved anticancer activity

    Zakharenko, A., Dyrkheeva, N. & Lavrik, O., 1 Jul 2019, In: Medicinal Research Reviews. 39, 4, p. 1427-1441 15 p.

    Research output: Contribution to journalReview articlepeer-review

  56. Dual function of HPF1 in the modulation of PARP1 and PARP2 activities

    Kurgina, T. A., Moor, N. A., Kutuzov, M. M., Naumenko, K. N., Ukraintsev, A. A. & Lavrik, O. I., Dec 2021, In: Communications Biology. 4, 1, 1259.

    Research output: Contribution to journalArticlepeer-review

  57. Dynamical transition in molecular glasses and proteins observed by spin relaxation of nitroxide spin probes and labels

    Golysheva, E. A., Shevelev, G. Y. & Dzuba, S. A., 14 Aug 2017, In: Journal of Chemical Physics. 147, 6, p. 064501 9 p., 064501.

    Research output: Contribution to journalArticlepeer-review

  58. Dynamic light scattering study of base excision DNA repair proteins and their complexes

    Vasil'eva, I. A., Anarbaev, R. O., Moor, N. A. & Lavrik, O. I., 1 Mar 2019, In: Biochimica et Biophysica Acta - Proteins and Proteomics. 1867, 3, p. 297-305 9 p.

    Research output: Contribution to journalArticlepeer-review

  59. Dynamics and Conformational Changes in Human NEIL2 DNA Glycosylase Analyzed by Hydrogen/Deuterium Exchange Mass Spectrometry

    Zhdanova, P. V., Ishchenko, A. A., Chernonosov, A. A., Zharkov, D. O. & Koval, V. V., 30 Jan 2022, In: Journal of Molecular Biology. 434, 2, 167334.

    Research output: Contribution to journalArticlepeer-review

  60. Dynamics of 8-Oxoguanine in DNA: Decisive Effects of Base Pairing and Nucleotide Context

    Ovcherenko, S. S., Shernyukov, A. V., Nasonov, D. M., Endutkin, A. V., Zharkov, D. O. & Bagryanskaya, E. G., 15 Mar 2023, In: Journal of the American Chemical Society. 145, 10, p. 5613-5617 5 p.

    Research output: Contribution to journalArticlepeer-review

  61. Editorial: The role of high-order chromatin organization in gene regulation

    Fishman, V. & Pindyurin, A. V., 3 Oct 2022, In: Frontiers in Genetics. 13, 1045787.

    Research output: Contribution to journalEditorialpeer-review

  62. Effective Inhibitors of Tyrosyl-DNA Phosphodiesterase 1 Based on Monoterpenoids as Potential Agents for Antitumor Therapy

    Chepanova, A. A., Li-Zhulanov, N. S., Sukhikh, A. S., Zafar, A., Reynisson, J., Zakharenko, A. L., Zakharova, O. D., Korchagina, D. V., Volcho, K. P., Salakhutdinov, N. F. & Lavrik, O. I., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 647-655 9 p.

    Research output: Contribution to journalArticlepeer-review

  63. Effect of benzo[a]pyrene on the expression of miR-126, miR-190a and their target genes EGFL7, TP53INP1 and PHLPP1 in primary endometrial cells

    Chanyshev, M. D., Koval, O. A., Nushtaeva, A. A. & Gulyaeva, L. F., 1 Jun 2019, In: Journal of Biochemical and Molecular Toxicology. 33, 6, 6 p., e22314.

    Research output: Contribution to journalArticlepeer-review

  64. Effect of DNA Methylation on the 3′→5′ Exonuclease Activity of Major Human Abasic Site Endonuclease APEX1

    Endutkin, A. V., Yatsenko, D. D. & Zharkov, D. O., Jan 2022, In: Biochemistry (Moscow). 87, 1, p. 10-20 11 p., 1.

    Research output: Contribution to journalArticlepeer-review

  65. Effect of downstream enzymes of base excision DNA repair pathway on the action of human DNA glycosylase MBD4

    Kladova, O., Iakovlev, D., Kuznetsov, N. & Fedorova, O., Sept 2017, In: FEBS Journal. 284, p. 112-112 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  66. Effect of Human XRCC1 Protein Oxidation on the Functional Activity of Its Complexes with the Key Enzymes of DNA Base Excision Repair

    Vasil’eva, I. A., Moor, N. A. & Lavrik, O. I., 22 Mar 2020, In: Biochemistry (Moscow). 85, 3, p. 288-299 12 p.

    Research output: Contribution to journalArticlepeer-review

  67. Effect of pH on DNA binding and catalysis of human apurinic/apyrimidinic endonuclease 1

    Alekseeva, I., Bakman, A., Vorobjev, Y., Fedorova, O. & Kuznetsov, N., Jul 2018, In: FEBS Open Bio. 8, p. 405-405 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  68. Effect of the relief on the measurement of bond rupture force with the help of AFM: The dynamics of interaction and optimization of the procedure

    Kurus, N. N., Dultsev, F. N., Shevelev, G., Lomzov, A. A. & Pyshnyi, D. V., 28 Jul 2018, In: Analytical Methods. 10, 28, p. 3498-3505 8 p.

    Research output: Contribution to journalArticlepeer-review

  69. Effect of Usnic Acid-Derived Tyrosyl-DNA Phosphodiesterase 1 Inhibitor Used as Monotherapy or in Combination with Olaparib on Transplanted Tumors In Vivo

    Kornienko, T. E., Zakharenko, A. L., Ilina, E. S., Chepanova, A. A., Zakharova, O. D., Dyrkheeva, N. S., Popova, N. A., Nikolin, V. P., Filimonov, A. S., Luzina, O. A., Salakhutdinov, N. F. & Lavrik, O. I., Apr 2023, In: Molecular Biology. 57, 2, p. 214-224 11 p.

    Research output: Contribution to journalArticlepeer-review

  70. Effects of cold atmospheric plasma on cancer and normal cells in vitro

    Patrakova, E., Troitskaya, O., Biryukov, M., Zakrevsky, D., Schweigert, I., Richter, V. & Koval, O., Jul 2021, In: FEBS Open Bio. 11, p. 299-299 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  71. Effects of Gamma-Radiation on DNA Damage in Onion (Allium cepa L.) Seedlings

    Bolsunovsky, A. Y., Dementyev, D. V., Frolova, T. S., Trofimova, E. A., Iniatkina, E. M., Vasilyev, S. A. & Sinitsyna, O. I., 1 Nov 2019, In: Doklady. Biochemistry and biophysics. 489, 1, p. 362-366 5 p.

    Research output: Contribution to journalArticlepeer-review

  72. Effects of long-term chemotherapy on elderly Wistar rats in experimental model in vivo

    Suhovskih, A., Sokolov, D., Politko, M., Ushakov, V., Mikhnevich, N. & Grigorieva, E., Jul 2021, In: FEBS Open Bio. 11, p. 200-200 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  73. Effects of Mutations in the Drosophila melanogaster Rif1 Gene on the Replication and Underreplication of Pericentromeric Heterochromatin in Salivary Gland Polytene Chromosomes

    Kolesnikova, T. D., Kolodyazhnaya, A. V., Pokholkova, G. V., Schubert, V., Dovgan, V. V., Romanenko, S. A., Prokopov, D. Y. & Zhimulev, I. F., 19 Jun 2020, In: Cells. 9, 6, 37 p., 1501.

    Research output: Contribution to journalArticlepeer-review

  74. Effects of Phosphoryl Guanidine Modification of Phosphate Residues on the Structure and Hybridization of Oligodeoxyribonucleotides

    Golyshev, V. M., Pyshnyi, D. V. & Lomzov, A. A., 25 Mar 2021, In: The journal of physical chemistry. B. 125, 11, p. 2841-2855 15 p.

    Research output: Contribution to journalArticlepeer-review

  75. Effects of single-nucleotide polymorphisms in human NEIL2 gene on functional role in DNA repair

    Kakhkharova, Z. I., Khantakova, D. V. & Grin, I. R., Jul 2019, In: FEBS Open Bio. 9, p. 157-158 2 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  76. Efficacy of the new therapeutic approach in curing malignant neoplasms on the model of human glioblastoma

    Dolgova, E. V., Andrushkevich, O. M., Kisaretova, P. E., Proskurina, A. S., Ritter, G. S., Dubatolova, T. D., Romanenko, M. V., Taranov, O. S., Efremov, Y. R., Zavyalov, E. L., Romaschenko, A. V., Mishinov, S. V., Kirikovich, S. S., Levites, E. V., Potter, E. A., Ostanin, A. A., Chernykh, E. R., Roshchin, S. Y., Bervitskiy, A. V., Moysak, G. I., & 2 othersRzaev, J. A. & Bogachev, S. S., Aug 2021, In: Cancer Biology and Medicine. 18, 3, p. 910-930 21 p.

    Research output: Contribution to journalArticlepeer-review

  77. Efficient inhibition of influenza A viral replication in cells by deoxyribozymes delivered by nanocomposites

    Repkova, M., Levina, A., Chelobanov, B., Ismagilov, Z., Shatskaya, N., Baiborodin, S., Filippova, E., Mazurkova, N. & Zarytova, V., 1 Jun 2017, In: International Journal of Antimicrobial Agents. 49, 6, p. 703-708 6 p.

    Research output: Contribution to journalArticlepeer-review

  78. EGFR Suppression Inhibits the Sphere Formation of MCF7 Cells Overexpressing EGFR

    Novak, D. D., Troitskaya, O. S., Nushtaeva, A. A., Zhilnikova, M. V., Richter, V. A., Meschaninova, M. I. & Koval, O. A., 2023, In: Acta Naturae. 15, 2, p. 59-69 11 p., 7.

    Research output: Contribution to journalArticlepeer-review

  79. Egfr transgene stimulates spontaneous formation of mcf7 breast cancer cells spheroids with partly loss of her3 receptor

    Troitskaya, O., Novak, D., Nushtaeva, A., Savinkova, M., Varlamov, M., Ermakov, M., Richter, V. & Koval, O., 1 Dec 2021, In: International Journal of Molecular Sciences. 22, 23, 12937.

    Research output: Contribution to journalArticlepeer-review

  80. ErbB4 Is a Potential Key Regulator of the Pathways Activated by NTRK-Fusions in Thyroid Cancer

    Kechin, A., Borobova, V., Kel, A., Ivanov, A. & Filipenko, M., 1 Mar 2022, In: Applied Sciences (Switzerland). 12, 5, 2506.

    Research output: Contribution to journalArticlepeer-review

  81. Erratum: Polymorphisms of genes involved in inflammation and blood vessel development influence the risk of varicose veins

    Shadrina, A., Tsepilov, Y., Smetanina, M., Voronina, E., Seliverstov, E., Ilyukhin, E., Kirienko, A., Zolotukhin, I. & Filipenko, M., 1 Nov 2018, In: Clinical Genetics. 94, 5, p. 491 1 p.

    Research output: Contribution to journalComment/debatepeer-review

  82. Erythrocytes 3D genome organization in vertebrates

    Ryzhkova, A., Taskina, A., Khabarova, A., Fishman, V. & Battulin, N., Feb 2021, In: Scientific Reports. 11, 1, 4414.

    Research output: Contribution to journalArticlepeer-review

  83. Establishment of Constraints on Amyloid Formation Imposed by Steric Exclusion of Globular Domains

    Azizyan, R. A., Garro, A., Radkova, Z., Anikeenko, A., Bakulina, A., Dumas, C. & Kajava, A. V., 12 Oct 2018, In: Journal of Molecular Biology. 430, 20, p. 3835-3846 12 p.

    Research output: Contribution to journalArticlepeer-review

  84. Establishment of primary human breast cancer cell lines using "pulsed hypoxia" method and development of metastatic tumor model in immunodeficient mice

    Nushtaeva, A. A., Karpushina, A. A., Ermakov, M. S., Gulyaeva, L. F., Gerasimov, A. V., Sidorov, S. V., Gayner, T. A., Yunusova, A. Y., Tkachenko, A. V., Richter, V. A. & Koval, O. A., 28 Feb 2019, In: Cancer Cell International. 19, 1, p. 46 19 p., 46.

    Research output: Contribution to journalArticlepeer-review

  85. Estimating range disjunction time of the Palearctic Admirals (Limenitis L.) with COI and histone H1 genes

    Solovyev, V. I., Dubatolov, V. V., Vavilova, V. Y. & Kosterin, O. E., Dec 2022, In: Organisms Diversity and Evolution. 22, 4, p. 975-1002 28 p.

    Research output: Contribution to journalArticlepeer-review

  86. Ethane formation via catalytic low-temperature steam reforming of C3+-alkanes

    Urlukov, A. S., Uskov, S. I., Sobyanin, V. A., Snytnikov, P. V. & Potemkin, D. I., 15 Oct 2022, In: Chemical Engineering Journal. 446, 136993.

    Research output: Contribution to journalArticlepeer-review

  87. Evaluation of antioxidant activity and cytotoxicity of polyfluorinated diarylacetylenes and indoles toward human cancer cells

    Zakharova, O., Nevinsky, G., Politanskaya, L., Baev, D., Ovchinnikova, L. & Tretyakov, E., 1 Oct 2019, In: Journal of Fluorine Chemistry. 226, 12 p., 109353.

    Research output: Contribution to journalArticlepeer-review

  88. Evaluation of HA-D222G/N polymorphism using targeted NGS analysis in A(H1N1)pdm09 influenza virus in Russia in 2018–2019

    Danilenko, A. V., Kolosova, N. P., Shvalov, A. N., Ilyicheva, T. N., Svyatchenko, S. V., Durymanov, A. G., Bulanovich, J. A., Goncharova, N. I., Susloparov, I. M., Marchenko, V. Y., Tregubchak, T. V., Gavrilova, E. V., Maksyutov, R. A. & Ryzhikov, A. B., Apr 2021, In: PLoS ONE. 16, 4 April, e0251019.

    Research output: Contribution to journalReview articlepeer-review

  89. Evolutionary Origins of DNA Repair Pathways: Role of Oxygen Catastrophe in the Emergence of DNA Glycosylases

    Prorok, P., Grin, I. R., Matkarimov, B. T., Ishchenko, A. A., Laval, J., Zharkov, D. O. & Saparbaev, M., Jul 2021, In: Cells. 10, 7, 1591.

    Research output: Contribution to journalReview articlepeer-review

  90. Evolutionary sex chromosome translocations in amniotes

    Trifonov, V. A., Lisachov, A. P., Kichigin, I. G., Makunin, A. I., Pereira, J. C., Druzhkova, A. S., Ferguson-Smith, M. A. & Giovannotti, M., 16 Aug 2018, In: Comparative Cytogenetics. 12, 3, p. 304-305 2 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  91. Evolution of inhibitor-resistant natural mutant forms of HIV-1 protease probed by pre-steady state kinetic analysis

    Zakharova, M. Y., Kuznetsova, A. A., Kaliberda, E. N., Dronina, M. A., Kolesnikov, A. V., Kozyr, A. V., Smirnov, I. V., Rumsh, L. D., Fedorova, O. S., Knorre, D. G., Gabibov, A. G. & Kuznetsov, N. A., 1 Nov 2017, In: Biochimie. 142, p. 125-134 10 p.

    Research output: Contribution to journalArticlepeer-review

  92. Evolution of inhibitor-resistant variants of HIV protease analyzed by pre-steady state kinetic analysis

    Zakharova, M., Kuznetsova, A., Kaliberda, E., Dronina, M., Kolesnikov, A., Kozyr, A., Smirnov, I., Rumsh, L., Fedorova, O., Knorre, D., Gabibov, A. & Kuznetsov, N., Jul 2018, In: FEBS Open Bio. 8, p. 290-291 2 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  93. Evolution of microRNA biogenesis genes in the sterlet (Acipenser ruthenus) and other polyploid vertebrates

    Fofanov, M. V., Prokopov, D. Y., Kuhl, H., Schartl, M. & Trifonov, V. A., 2 Dec 2020, In: International Journal of Molecular Sciences. 21, 24, p. 1-25 25 p., 9562.

    Research output: Contribution to journalArticlepeer-review

  94. Evolution of tandemly arranged repetitive DNAs in three species of Cyprinoidei with different ploidy levels

    Bishani, A., Prokopov, D. Y., Romanenko, S. A., Molodtseva, A. S., Perelman, P. L., Interesova, E. A., Beklemisheva, V. R., Graphodatsky, A. S. & Trifonov, V. A., May 2021, In: Cytogenetic and Genome Research. 161, 1-2, p. 32-42 11 p.

    Research output: Contribution to journalArticlepeer-review

  95. Excision of Carbohydrate-Modified dNMP Analogues from DNA 3' end by Human Apurinic/Apyrimidinic Endonuclease 1 (APE1) and Tyrosyl-DNA Phosphodiesterase 1 (TDP1)

    Dyrkheeva, N. S., Lebedeva, N. A., Sherstyuk, Y. V., Abramova, T. V., Silnikov, V. N. & Lavrik, O. I., 1 Nov 2018, In: Molekuliarnaia biologiia. 52, 6, p. 1066-1073 8 p.

    Research output: Contribution to journalArticlepeer-review

  96. Excision of Carbohydrate-Modified dNMP Analogues from DNA 3' end by Human Apurinic/Apyrimidinic Endonuclease 1 (APE1) and Tyrosyl-DNA Phosphodiesterase 1 (TDP1)

    Dyrkheeva, N. S., Lebedeva, N. A., Sherstyuk, Y. V., Abramova, T. V., Silnikov, V. N. & Lavrik, O. I., 1 Nov 2018, In: Molecular Biology. 52, 6, p. 922-928 7 p.

    Research output: Contribution to journalArticlepeer-review

  97. Exosomal Cargo in Ovarian Cancer Dissemination

    Dzhugashvili, E. & Tamkovich, S., 7 Dec 2023, In: Current issues in molecular biology. 45, 12, p. 9851-9867 17 p.

    Research output: Contribution to journalReview articlepeer-review

  98. Exosomal Protease Cargo as Prognostic Biomarker in Colorectal Cancer

    Yunusova, N. V., Zambalova, E. A., Patysheva, M. R., Kolegova, E. S., Afanas’ev, S. G., Cheremisina, O. V., Grigor’eva, A. E., Tamkovich, S. N. & Kondakova, I. V., 2021, In: Asian Pacific Journal of Cancer Prevention. 22, 3, p. 861-869 9 p., 3.

    Research output: Contribution to journalArticlepeer-review

  99. Exosomes in Breast Cancer: Involvement in Tumor Dissemination and Prospects for Liquid Biopsy

    Shefer, A., Yalovaya, A. & Tamkovich, S., 9 Aug 2022, In: International Journal of Molecular Sciences. 23, 16, 8845.

    Research output: Contribution to journalReview articlepeer-review

  100. Expanding the list of sequence-agnostic enzymes for chromatin conformation capture assays with S1 nuclease

    Maria, G., Andrey, P., Artem, S., Nikita, T., Andrey, K., Evgeny, K., Oxana, R., Maxim, F. & Veniamin, F., 11 Dec 2023, In: Epigenetics & chromatin. 16, 1, 13 p., 48.

    Research output: Contribution to journalArticlepeer-review

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