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  1. Article › Research › Peer-reviewed

  2. Molecular dynamics approach to identification of new OGG1 cancer-associated somatic variants with impaired activity

    Popov, A. V., Endutkin, A. V., Yatsenko, D. D., Yudkina, A. V., Barmatov, A. E., Makasheva, K. A., Raspopova, D. Y., Diatlova, E. A. & Zharkov, D. O., 1 Jan 2021, In: Journal of Biological Chemistry. 296, 100229.

    Research output: Contribution to journal › Article › peer-review

  3. Molecular dynamics simulation of the opposite-base preference and interactions in the active site of formamidopyrimidine-DNA glycosylase

    Popov, A. V., Endutkin, A. V., Vorobjev, Y. N. & Zharkov, D. O., 8 May 2017, In: BMC Structural Biology. 17, 1, p. 1-19 19 p., 5.

    Research output: Contribution to journal › Article › peer-review

  4. Natural Nucleoside Modifications in Guide RNAs Can Modulate the Activity of the CRISPR-Cas9 System In Vitro.

    Prokhorova, D. V., Vokhtantsev, I. P., Tolstova, P. O., Zhuravlev, E. S., Kulishova, L. M., Zharkov, D. O. & Stepanov, G. A., Dec 2022, In: The CRISPR journal. 5, 6, p. 799-812 14 p.

    Research output: Contribution to journal › Article › peer-review

  5. Non-agglomerated silicon-organic nanoparticles and their nanocomplexes with oligonucleotides: Synthesis and properties

    Levina, A. S., Repkova, M. N., Shikina, N. V., Ismagilov, Z. R., Yashnik, S. A., Semenov, D. V., Savinovskaya, Y. I., Mazurkova, N. A., Pyshnaya, I. A. & Zarytova, V. F., 21 Sept 2018, In: Beilstein Journal of Nanotechnology. 9, 1, p. 2516-2525 10 p.

    Research output: Contribution to journal › Article › peer-review

  6. Nuclear delivery of oligonucleotides via nanocomposites based on TiO2 nanoparticles and polylysine

    Chelobanov, B. P., Repkova, M. N., Baiborodin, S. I., Ryabchikova, E. I. & Stetsenko, D. A., 9 Nov 2017, In: Molekuliarnaia biologiia. 51, 5, p. 797-808 12 p.

    Research output: Contribution to journal › Article › peer-review

  7. Nuclear delivery of oligonucleotides via nanocomposites based on TiO2 nanoparticles and polylysine

    Chelobanov, B. P., Repkova, M. N., Baiborodin, S. I., Ryabchikova, E. I. & Stetsenko, D. A., 1 Sept 2017, In: Molecular Biology. 51, 5, p. 695-704 10 p.

    Research output: Contribution to journal › Article › peer-review

  8. Nucleotide modifications decrease innate immune response induced by synthetic analogs of snRNAs and snoRNAs

    Stepanov, G., Zhuravlev, E., Shender, V., Nushtaeva, A., Balakhonova, E., Mozhaeva, E., Kasakin, M., Koval, V., Lomzov, A., Pavlyukov, M., Malyants, I., Zhorov, M., Kabilova, T., Chernolovskaya, E., Govorun, V., Kuligina, E., Semenov, D. & Richter, V., 2 Nov 2018, In: Genes. 9, 11, 18 p., 531.

    Research output: Contribution to journal › Article › peer-review

  9. Observations on Protecting Groups in the Synthesis of Mono- and Triphosphates of Amino Alcohols

    Sherstyuk, Y. V., Chalova, P. V., Silnikov, V. N. & Abramova, T. V., 4 Mar 2019, In: Organic Preparations and Procedures International. 51, 2, p. 182-191 10 p.

    Research output: Contribution to journal › Article › peer-review

  10. Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation

    Gruber, D. R., Toner, J. J., Miears, H. L., Shernyukov, A. V., Kiryutin, A. S., Lomzov, A. A., Endutkin, A. V., Grin, I. R., Petrova, D. V., Kupryushkin, M. S., Yurkovskaya, A. V., Johnson, E. C., Okon, M., Bagryanskaya, E. G., Zharkov, D. O. & Smirnov, S. L., 16 Nov 2018, In: Nucleic Acids Research. 46, 20, p. 10827-10839 13 p.

    Research output: Contribution to journal › Article › peer-review

  11. Pan-cancer antagonistic inhibition pattern of ATM-driven G2/M checkpoint pathway vs other DNA repair pathways

    Zolotovskaia, M. A., Modestov, A. A., Suntsova, M. V., Rachkova, A. A., Koroleva, E. V., Poddubskaya, E. V., Sekacheva, M. I., Tkachev, V. S., Garazha, A. V., Glusker, A. A., Seryakov, A. P., Vladimirova, U. S., Rumiantsev, P. O., Moisseev, A. A., Zharkov, D. O., Kuzmin, D. V., Zhao, X., Prassolov, V. S., Shegay, P. V., Li, X., & 5 othersSteinbichler, T. B., Kim, E., Sorokin, M. I., Wang, Y. & Buzdin, A. A., Mar 2023, In: DNA Repair. 123, 18 p., 103448.

    Research output: Contribution to journal › Article › peer-review

  12. Photoactivatable CRISPR/Cas9 System

    Akhmetova, E. A., Golyshev, V. M., Vokhtantcev, I. P., Meschaninova, M. I., Venyaminova, A. G. & Novopashina, D. S., Mar 2021, In: Russian Journal of Bioorganic Chemistry. 47, 2, p. 496-504 9 p.

    Research output: Contribution to journal › Article › peer-review

  13. Photoactivatable nanocrispr/cas9 system based on crrna reversibly immobilized on carbon nanoparticles

    Semikolenova, O., Sakovina, L., Akhmetova, E., Kim, D., Vokhtantsev, I., Golyshev, V., Vorobyeva, M., Novopashin, S. & Novopashina, D., 1 Oct 2021, In: International Journal of Molecular Sciences. 22, 20, 10919.

    Research output: Contribution to journal › Article › peer-review

  14. Photoinduced inhibition of DNA repair enzymes and the possible mechanism of photochemical transformations of the ruthenium nitrosyl complex [RuNO(β-Pic)2(NO2)2OH

    Mikhailov, A. A., Khantakova, D. V., Nichiporenko, V. A., Glebov, E. M., Grivin, V. P., Plyusnin, V. F., Yanshole, V. V., Petrova, D. V., Kostin, G. A. & Grin, I. R., 11 Dec 2019, In: Metallomics : integrated biometal science. 11, 12, p. 1999-2009 11 p.

    Research output: Contribution to journal › Article › peer-review

  15. Platinum Polyoxoniobates Form Adducts with DNA

    Yudkina, A. V., Sokolov, M. N., Abramov, P. A., Grin, I. R. & Zharkov, D. O., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 641-646 6 p.

    Research output: Contribution to journal › Article › peer-review

  16. P2O5-Promoted Cyclization of Di[aryl(hetaryl)methyl] Malonic Acids as a Pathway to Fused Spiro[4.4]nonane-1,6-Diones

    Ivanov, K. S., Riesebeck, T., Skolyapova, A., Liakisheva, I., Kazantsev, M. S., Sonina, A. A., Peshkov, R. Y. & Mostovich, E. A., 4 Mar 2022, In: Journal of Organic Chemistry. 87, 5, p. 2456-2469 14 p.

    Research output: Contribution to journal › Article › peer-review

  17. Reading and misreading 8-oxoguanine, a paradigmatic ambiguous nucleobase

    Yudkina, A. V., Shilkin, E. S., Endutkin, A. V., Makarova, A. V. & Zharkov, D. O., 1 May 2019, In: Crystals. 9, 5, 31 p., 269.

    Research output: Contribution to journal › Article › peer-review

  18. Recognition but no repair of abasic site in single-stranded DNA by human ribosomal uS3 protein residing within intact 40S subunit

    Grosheva, A. S., Zharkov, D. O., Stahl, J., Gopanenko, A. V., Tupikin, A. E., Kabilov, M. R., Graifer, D. M. & Karpova, G. G., 20 Apr 2017, In: Nucleic Acids Research. 45, 7, p. 3833-3843 11 p.

    Research output: Contribution to journal › Article › peer-review

  19. Recognition of a Clickable Abasic Site Analog by DNA Polymerases and DNA Repair Enzymes

    Endutkin, A. V., Yudkina, A. V., Zharkov, T. D., Kim, D. V. & Zharkov, D. O., Nov 2022, In: International Journal of Molecular Sciences. 23, 21, 13353.

    Research output: Contribution to journal › Article › peer-review

  20. Relative Efficiency of Recognition of 5-Methylcytosine and 5-Hydroxymethylcytosine by Methyl-Dependent DNA Endonuclease GlaI

    Petrova, D. V., Naumenko, M. B., Khantakova, D. V., Grin, I. R. & Zharkov, D. O., 1 Nov 2019, In: Russian Journal of Bioorganic Chemistry. 45, 6, p. 625-629 5 p.

    Research output: Contribution to journal › Article › peer-review

  21. Requirements for DNA bubble structure for efficient cleavage by helix-two-turn-helix DNA glycosylases

    Makasheva, K. A., Endutkin, A. V. & Zharkov, D. O., Jan 2020, In: Mutagenesis. 35, 1, p. 119-128 10 p.

    Research output: Contribution to journal › Article › peer-review

  22. Residue coevolution reveals functionally important intramolecular interactions in formamidopyrimidine-DNA glycosylase

    Endutkin, A. V., Koptelov, S. S., Popov, A. V., Torgasheva, N. A., Lomzov, A. A., Tsygankova, A. R., Skiba, T. V., Afonnikov, D. A. & Zharkov, D. O., 1 Sept 2018, In: DNA Repair. 69, p. 24-33 10 p.

    Research output: Contribution to journal › Article › peer-review

  23. Response of PRIMPOL-Knockout Human Lung Adenocarcinoma A549 Cells to Genotoxic Stress

    Gromova, A. S., Boldinova, E. O., Kim, D. V., Chuprov-Netochin, R. N., Leonov, S. V., Pustovalova, M. V., Zharkov, D. O. & Makarova, A. V., Nov 2023, In: Biochemistry (Moscow). 88, 11, p. 1933-1943 11 p.

    Research output: Contribution to journal › Article › peer-review

  24. Self-cleaning photoactive cotton fabric modified with nanocrystalline TiO2 for efficient degradation of volatile organic compounds and DNA contaminants

    Solovyeva, M., Selishchev, D., Cherepanova, S., Stepanov, G., Zhuravlev, E., Richter, V. & Kozlov, D., 15 May 2020, In: Chemical Engineering Journal. 388, 13 p., 124167.

    Research output: Contribution to journal › Article › peer-review

  25. Stalling of Eukaryotic Translesion DNA Polymerases at DNA-Protein Cross-Links

    Yudkina, A. V., Shilkin, E. S., Makarova, A. V. & Zharkov, D. O., Feb 2022, In: Genes. 13, 2, 166.

    Research output: Contribution to journal › Article › peer-review

  26. Symmetric Spirenes: Promising Building Blocks for New Generation Opto-Electronic Materials

    Шеповалов, К. М., Пешков, Р. Ю., Бенасси, Э. & Мостович, Е. А., 20 Jun 2022, In: Physical Chemistry Chemical Physics. 24, 27, p. 16836-16851 16 p.

    Research output: Contribution to journal › Article › peer-review

  27. Template Properties of 5-Methyl-2'-Deoxycytidine and 5-Hydroxymethyl-2'-Deoxycytidine in Reactions with Human Translesion and Reparative DNA Polymerases

    Shilkin, E. S., Petrova, D. V., Poltorachenko, V. A., Boldinova, E. O., Zharkov, D. O. & Makarova, A. V., Mar 2021, In: Molecular Biology. 55, 2, p. 267-272 6 p.

    Research output: Contribution to journal › Article › peer-review

  28. Toward gene therapy of hypertension: Experimental study on hypertensive ISIAH rats

    Repkova, M. N., Levina, A. S., Seryapina, A. A., Shikina, N. V., Bessudnova, E. V., Zarytova, V. F. & Markel, A. L., 1 Apr 2017, In: Biochemistry (Moscow). 82, 4, p. 454-457 4 p.

    Research output: Contribution to journal › Article › peer-review

  29. Translesion activity of PrimPol on DNA with cisplatin and DNA–protein cross-links

    Boldinova, E. O., Yudkina, A. V., Shilkin, E. S., Gagarinskaya, D. I., Baranovskiy, A. G., Tahirov, T. H., Zharkov, D. O. & Makarova, A. V., Dec 2021, In: Scientific Reports. 11, 1, 17588.

    Research output: Contribution to journal › Article › peer-review

  30. Variable termination sites of DNA polymerases encountering a DNA–protein cross-link

    Yudkina, A. V., Dvornikova, A. P. & Zharkov, D. O., 1 Jun 2018, In: PLoS ONE. 13, 6, p. e0198480 17 p., 0198480.

    Research output: Contribution to journal › Article › peer-review

  31. Альтернативные механизмы мутагенеза в mCpG-сайтах при репликации и репарации

    Shilkin, E. S., Petrova, D. V., Zharkov, D. O. & Makarova, A. V., 2023, In: Molekuliarnaia biologiia. 57, 4, p. 587-596 10 p., 3.

    Research output: Contribution to journal › Article › peer-review

  32. Биологические свойства вируса гриппа H6N8‐субтипа, выделенного от диких птиц на юге Западной Сибири

    Li, X., Dubovitskiy, N. A., Derko, A. A., Glushchenko, A. V., Sobolev, I. A., Druzyaka, A. V., Medzhidova, M. M., Musinova, E. M., Sharshov, K. A. & Shestopalov, A. M., Jan 2021, In: South of Russia: Ecology, Development. 16, 1 (58), p. 45-52 8 p., 5.

    Research output: Contribution to journal › Article › peer-review

  33. Влияние метилирования ДНК на 3′→5′-экзонуклеазную активность основной апурин-апиримидиновой эндонуклеазы человека APEX1

    Ендуткин, А. В., Яценко, Д. Д. & Жарков, Д. О., 2022, In: Биохимия. 87, 1, p. 3-15 13 p., 1.

    Research output: Contribution to journal › Article › peer-review

  34. Изучение свойств рекомбинантной эндонуклеазы IV Mycobacterium tuberculosis

    Dymova, M. A., Endutkin, A. V., Polunovsky, V. V., Zakabunin, A. I., Khrapov, E. A., Torgasheva, N. A., Yudkina, A. V., Mechetin, G. V., Filipenko, M. L. & Zharkov, D. O., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 258-268 11 p., 7.

    Research output: Contribution to journal › Article › peer-review

  35. Матричные свойства 5-метил-2'-дезоксицитидина и 5-гидроксиметил-2'-дезоксицитидина в реакциях с транслезионными и репаратичными ДНК-полимеразами человека

    Shilkin, E. S., Petrova, D. V., Poltorachenko, V. A., Boldinova, E. O., Zharkov, D. O. & Makarova, A. V., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 305-311 7 p., 11.

    Research output: Contribution to journal › Article › peer-review

  36. Механизмы обеспечения стабильности генома коронавирусов как потенциальные мишени для противовирусных средств

    Ююкина, С. К. & Жарков, Д. О., 14 Mar 2022, In: Вестник РАН. 92, 8, p. 737-746 10 p., 5.

    Research output: Contribution to journal › Article › peer-review

  37. Механизмы специфичности системы CRISPR/Cas9 в геномном редактировании

    Kulishova, L. M., Vokhtantsev, I. P., Kim, D. V. & Zharkov, D. O., 2023, In: Molekuliarnaia biologiia. 57, 2, p. 269-284 16 p., 12.

    Research output: Contribution to journal › Article › peer-review

  38. Рибонуклеаза Ribonuclease pumilus ингибирует миграцию клеток аденокарциномы двенадцатиперстной кишки человека HuTu 80

    Zelenikhin, P. V., Ead Mohamed, I. S., Nadyrova, A. I., Sirotkina, A. A., Ulyanova, V. V., Mironova, N. L., Mitkevich, V. A., Makarov, A. A., Zenkova, M. A. & Ilinskaya, O. N., 1 Jan 2020, In: Molekuliarnaia biologiia. 54, 1, p. 146-152 7 p.

    Research output: Contribution to journal › Article › peer-review

  39. Факторы, влияющие на стабильность тримерной формы 2'-дезоксиуридин-5'-трифосфатнуклеотидгидролазы Escherichia coli

    Yudkina, A. V., Kovalenko, E. A., Endutkin, A. V., Panferova, E. P., Kirilenko, A. A., Kokhanenko, A. A. & Zharkov, D. O., 1 Mar 2023, In: Molekuliarnaia biologiia. 57, 2, p. 330-339 10 p., 17.

    Research output: Contribution to journal › Article › peer-review

  40. Характеристика деметилирующей ДНК-гликозилазы ROS1 из Nicotiana tabacum L

    Петрова, Д. В., Пермякова, Н. В., Грин, И. Р. & Жарков, Д. О., Jul 2022, In: Вавиловский журнал генетики и селекции. 26, 4, p. 341-348 8 p., 1.

    Research output: Contribution to journal › Article › peer-review

  41. Экзосомы молока лошади: выделение, микроскопический и биохимический анализ, перспективы использования

    SEDYKH, S. E., KULESHOVA, A. E., PURVINSH, L. V., BURKOVA, E. E., GRIGORIEVA, A. E., EVTUSHENKO, E. G., STEPANOV, G. A., RYABCHIKOVA, E. I. & NEVINSKII, G. A., 2020, In: Biotekhnologiya. 36, 5, p. 62-71 10 p.

    Research output: Contribution to journal › Article › peer-review

  42. Review article › Research › Peer-reviewed

  43. Aberrant base excision repair pathway of oxidatively damaged DNA: Implications for degenerative diseases

    Talhaoui, I., Matkarimov, B. T., Tchenio, T., Zharkov, D. O. & Saparbaev, M. K., 1 Jun 2017, In: Free Radical Biology and Medicine. 107, p. 266-277 12 p.

    Research output: Contribution to journal › Review article › peer-review

  44. Antisense oligonucleotides for the arterial hypertension mechanisms study and therapy

    Klimov, L. O., Seryapina, A. A., Zarytova, V. F., Levina, A. S. & Markel, A. L., 1 Jan 2018, In: Вавиловский журнал генетики и селекции. 22, 2, p. 240-247 8 p.

    Research output: Contribution to journal › Review article › peer-review

  45. Base Excision DNA Repair Deficient Cells: From Disease Models to Genotoxicity Sensors

    Kim, D. V., Makarova, A. V., Miftakhova, R. R. & Zharkov, D. O., 1 Jan 2019, In: Current Pharmaceutical Design. 25, 3, p. 298-312 15 p.

    Research output: Contribution to journal › Review article › peer-review

  46. Base Excision DNA Repair in Plants: Arabidopsis and Beyond

    Grin, I. R., Petrova, D. V., Endutkin, A. V., Ma, C., Yu, B., Li, H. & Zharkov, D. O., 29 Sept 2023, In: International Journal of Molecular Sciences. 24, 19, 14746.

    Research output: Contribution to journal › Review article › peer-review

  47. Boron-containing nucleosides as tools for boron-neutron capture therapy

    Zharkov, D. O., Yudkina, A., Riesebeck, T., Loshchenova, P. S., Mostovich, E. A. & Dianov, G. L., 2021, In: American journal of cancer research. 11, 10, p. 4668-4682 15 p.

    Research output: Contribution to journal › Review article › peer-review

  48. DNA Damage Response and Repair in Boron Neutron Capture Therapy

    Mechetin, G. V. & Zharkov, D. O., 2 Jan 2023, In: Genes. 14, 1, 127.

    Research output: Contribution to journal › Review article › peer-review

  49. Evolutionary Origins of DNA Repair Pathways: Role of Oxygen Catastrophe in the Emergence of DNA Glycosylases

    Prorok, P., Grin, I. R., Matkarimov, B. T., Ishchenko, A. A., Laval, J., Zharkov, D. O. & Saparbaev, M., Jul 2021, In: Cells. 10, 7, 1591.

    Research output: Contribution to journal › Review article › peer-review

  50. GO System, a DNA Repair Pathway to Cope with Oxidative Damage

    Endutkin, A. V. & Zharkov, D. O., Mar 2021, In: Molecular Biology. 55, 2, p. 193-210 18 p.

    Research output: Contribution to journal › Review article › peer-review

  51. GO-система: путь репарации ДНК для борьбы с окислительными повреждениями

    Endutkin, A. V. & Zharkov, D. O., 1 Mar 2021, In: Molekuliarnaia biologiia. 55, 2, p. 223-242 20 p., 5.

    Research output: Contribution to journal › Review article › peer-review

  52. Guide RNA modification as a way to improve CRISPR/Cas9-based genome-editing systems

    Filippova, J., Matveeva, A., Zhuravlev, E. & Stepanov, G., 1 Dec 2019, In: Biochimie. 167, p. 49-60 12 p.

    Research output: Contribution to journal › Review article › peer-review

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